|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
467-805 |
8.86e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 91.92 E-value: 8.86e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 467 ELRQYYIEKLEKQKEDYVEQISSLRQDHEDEVRKLRQsHELDLEGIRQAKMVELSAVQDHGNyldTLRLASSNLQELRDG 546
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAELEELEAELAE-LEAELEELRLELEELELELEEAQA---EEYELLAELARLEQD 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 547 MSDNQERERQLEARERRLADQERRLKMDEETADDEKRRLMELVSTLELQLGRLSKESAEENWQLRQRMSSLEAERKAFER 626
Cdd:COG1196 304 IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 627 EKEFHREQMQRDEKRVEDLKALQLAEMERLHHDLQEERNQLTVERQQIELRQQLNEHGDPDRDRRELEAQLQVAREAIRR 706
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 707 A-DEERDRYHKLQREMEQRKRHLLDKEHALNLKEDELGQATGAYRLATSRQHLAEQK--AREADQLLQAKLKVMAKRAQE 783
Cdd:COG1196 464 LlAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRglAGAVAVLIGVEAAYEAALEAA 543
|
330 340
....*....|....*....|..
gi 24662907 784 IAEKEAQLAHERMLVAQDRMAL 805
Cdd:COG1196 544 LAAALQNIVVEDDEVAAAAIEY 565
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
533-846 |
2.22e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.59 E-value: 2.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 533 LRLASSNLQELRDGMSdnqERERQLE--ARERRLADQERRLKMDEEtaddeKRRLMELVSTLELQLGRLSKESAEENwQL 610
Cdd:COG1196 181 LEATEENLERLEDILG---ELERQLEplERQAEKAERYRELKEELK-----ELEAELLLLKLRELEAELEELEAELE-EL 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 611 RQRMSSLEAERKAFEREKEFHREQMQRDEKRVEDLKA---LQLAEMERLHHDL---QEERNQLTVERQQIELRQQLNEHG 684
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAeeyELLAELARLEQDIarlEERRRELEERLEELEEELAELEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 685 DPDRDRRELEAQLQVAREAIRRADEERDRYHKLQREMEQRKRHLLDKEHALNLKEDELGQATGAYRLATSRQHLAEQKAR 764
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 765 EADQLLQAKLKVmAKRAQEIAEKEAQLAHERMLVAQDRMALVNLKKQISRSRCAICKMGAESAEIAQRRANVNPTAATDL 844
Cdd:COG1196 412 LLERLERLEEEL-EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
..
gi 24662907 845 QL 846
Cdd:COG1196 491 AR 492
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
418-785 |
7.55e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.58 E-value: 7.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 418 KQRLDELVANMKVNYEQEIEMIDSSYKKQIKVLEEHLSVVEKRLKDENSELRQYYIEKLEKQKEdyVEQISSLRQDHEDE 497
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELE--LEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 498 VRKLRQSHELDLEGIRQAKMVELSAVQDHGNYLDTLRLASSNLQELRdgmsdnQERERQ---LEARERRLADQERRLKMD 574
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE------EELEEAeeeLEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 575 EETADDEKRRLMELVSTLELQLGRLSKESAEENwQLRQRMSSLEAERKAFEREKEFHREQMQRDEKRVEDLKALQLAEME 654
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLE-ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 655 RLHHDLQEERNQLTVERQQIELRQQLNEHGDPDRDRRELEAQLQVAREAIRRADEERDRYHKLQREMEQRKRhlLDKEHA 734
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG--LAGAVA 527
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 24662907 735 LNLKEDELGQATGAYRLATSRQHLAEQKAREADQLLQAKLKVMAKRAQEIA 785
Cdd:COG1196 528 VLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLP 578
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
551-787 |
3.42e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.40 E-value: 3.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 551 QERERQLEARERRLADQERRLKMDEETADDEKRRLMELVSTLELQLGRLSKESAEENWQLRQRMSSLEAERKAFEREKEF 630
Cdd:TIGR02169 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 631 HREQMQRDEKRVEDLKAL---QLAEMERLHHDLQEERNQLT-VERQQIELRQQLNEHgdpdrdRRELEAQLQVAREAIRR 706
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEidkLLAEIEELEREIEEERKRRDkLTEEYAELKEELEDL------RAELEEVDKEFAETRDE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 707 ADEERDRYHKLQREMEQRKRHLLDKEHALNLKEDELGQATGAyrLATSRQHLAEQKAREADqlLQAKLKVMAKRAQEIAE 786
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAA--IAGIEAKINELEEEKED--KALEIKKQEWKLEQLAA 462
|
.
gi 24662907 787 K 787
Cdd:TIGR02169 463 D 463
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
477-800 |
4.00e-11 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 67.07 E-value: 4.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 477 EKQKEDYVEQISS--LRQDHEDEVRKLRQSHEL-DLEGIRQAKMVELSAVqdhgnYLDTLRLAssnlqelrdgmsdnQER 553
Cdd:pfam17380 286 ERQQQEKFEKMEQerLRQEKEEKAREVERRRKLeEAEKARQAEMDRQAAI-----YAEQERMA--------------MER 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 554 ERQLEarerrladqerRLKMDEETADDEKRRLMELVSTLE--LQLGRLSKESAEENWQLRQRMSSL--------EAERKA 623
Cdd:pfam17380 347 ERELE-----------RIRQEERKRELERIRQEEIAMEISrmRELERLQMERQQKNERVRQELEAArkvkileeERQRKI 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 624 FEREKEFHREQMQRDEKRVEDLKALQ---LAEMERLHHDLQEERNQLTVERQQIElrqqlnehgdpDRDRRELEAQlqva 700
Cdd:pfam17380 416 QQQKVEMEQIRAEQEEARQREVRRLEeerAREMERVRLEEQERQQQVERLRQQEE-----------ERKRKKLELE---- 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 701 REAIRRADEERDRYHKLQREMEQRKRHLLDKEHALNLKEDELGQATGAYRLATSRQHLAEQKAREADQLLQAKLKVMAKR 780
Cdd:pfam17380 481 KEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRK 560
|
330 340
....*....|....*....|
gi 24662907 781 AQEIAEKEAQLAHERMLVAQ 800
Cdd:pfam17380 561 ATEERSRLEAMEREREMMRQ 580
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
454-735 |
1.81e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 1.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 454 LSVVEKRLKDENSELRQYyIEKLEKQKEDYVEQISSLRQdHEDEVRKLRQshelDLEGIRQAKMVELSAVQDHgnyldtl 533
Cdd:TIGR02169 665 GILFSRSEPAELQRLRER-LEGLKRELSSLQSELRRIEN-RLDELSQELS----DASRKIGEIEKEIEQLEQE------- 731
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 534 rlASSNLQELRDGMSDNQERERQLEARERRLADQERRL--------KMDEETADDEKRRLMELVSTLELQLGRLSKESAE 605
Cdd:TIGR02169 732 --EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIeeleedlhKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 606 enwqLRQRMSSLEAERKAFEREKEFHREQMQRDEKRVEDLKAlQLAEMERLHHDLQEERNQLT--VERQQIELRQQLNEH 683
Cdd:TIGR02169 810 ----IEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE-QIKSIEKEIENLNGKKEELEeeLEELEAALRDLESRL 884
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 24662907 684 GDPDRDRRELEAQLQVAREAIRRADEERDRYHKLQREMEQRKRHLLDKEHAL 735
Cdd:TIGR02169 885 GDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
497-792 |
3.55e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 3.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 497 EVRKLRQSHELDLEGIRQAKMVELSAVQDHGNYLDTLRLASSNLQELRDGMSDNQERERQLEARERRLADQERRLKMDEE 576
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 577 TADDEKRRLMELVSTLELQLGRLSKESAEENWQLRQRMSSLEAERK---AFEREKEFHREQMQRDEKRVEDLKAlQLAEM 653
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREaldELRAELTLLNEEAANLRERLESLER-RIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 654 ERLHHDLQEERNQLTVERQQIELrqqlnEHGDPDRDRRELEAQLQVAREAIRRADEE----RDRYHKLQREMEQRKRHLL 729
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAA-----EIEELEELIEELESELEALLNERASLEEAlallRSELEELSEELRELESKRS 911
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24662907 730 DKEHALNLKEDELGQATGAY-RLATSRQHLAEQKAREADQLLQAKLKVMAKRAQEIAEKEAQLA 792
Cdd:TIGR02168 912 ELRRELEELREKLAQLELRLeGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLK 975
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
451-722 |
8.79e-10 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 62.45 E-value: 8.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 451 EEHLSVVEKRLKDENSE-LRQyyiEKLEKQKEDYVEQiSSLRQDHEDEVRKLRQS-HELDLEGIRQAKM-VELSAVQDhg 527
Cdd:pfam17380 306 EEKAREVERRRKLEEAEkARQ---AEMDRQAAIYAEQ-ERMAMERERELERIRQEeRKRELERIRQEEIaMEISRMRE-- 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 528 nyldtlrlassnLQELRDGMSDNQERERQ-LEA-RERRLADQERRLKMDEETADDEKRRlMELVSTLELQLGRLSKESAE 605
Cdd:pfam17380 380 ------------LERLQMERQQKNERVRQeLEAaRKVKILEEERQRKIQQQKVEMEQIR-AEQEEARQREVRRLEEERAR 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 606 ENWQLRQ----RMSSLEAERKAFE--REKEFHREQMQRDEKRVEDLKALQL-AEMERLHHDLQEERNQLTVERQQIELRQ 678
Cdd:pfam17380 447 EMERVRLeeqeRQQQVERLRQQEEerKRKKLELEKEKRDRKRAEEQRRKILeKELEERKQAMIEEERKRKLLEKEMEERQ 526
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 24662907 679 -------QLNEHGDPDRDRRELEAQLQVaREAIRRADEERDRYHKLQREME 722
Cdd:pfam17380 527 kaiyeeeRRREAEEERRKQQEMEERRRI-QEQMRKATEERSRLEAMERERE 576
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
419-795 |
1.39e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 1.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 419 QRLDELVANMkvnyeQEIEMIDSSYKKQIKVLEEHLSVVEK--RLKDENSELRQYY----IEKLEKQKEDYVEQISSLRQ 492
Cdd:TIGR02168 179 RKLERTRENL-----DRLEDILNELERQLKSLERQAEKAERykELKAELRELELALlvlrLEELREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 493 DHEDEVRKLRQSHElDLEGIRqAKMVELSavqdhgnylDTLRLASSNLQELRDGMSDNQERERQLEARERRLADQERRLK 572
Cdd:TIGR02168 254 ELEELTAELQELEE-KLEELR-LEVSELE---------EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 573 MDEETADDEKRRLMELVSTLELQLGRLSKESAEenwqLRQRMSSLEAERKAFEREKEFHREQMQRDEKRVEDLKalqlae 652
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEEKLEELKEELES----LEAELEELEAELEELESRLEELEEQLETLRSKVAQLE------ 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 653 merlhHDLQEERNQLTVERQQIElrqQLNEHgdPDRDRRELEAQLQVAREAirradeerdRYHKLQREMEQRKRHLLDKE 732
Cdd:TIGR02168 393 -----LQIASLNNEIERLEARLE---RLEDR--RERLQQEIEELLKKLEEA---------ELKELQAELEELEEELEELQ 453
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24662907 733 HALNLKEDELGQATGAYRLATSRQHLAEQKAREADQLLQAkLKVMAKRAQEIAEKEAQLAHER 795
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEGVKALLKNQ 515
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
387-808 |
2.17e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 2.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 387 EPERKEHHKATSQEQEHLLLLEMDAKRNLLEKQRLDELVANmkvnyEQEIEMIDSSYKKQIKVLEEHLSVVEKRLKDENS 466
Cdd:COG1196 305 ARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE-----LEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 467 ELRQYYIEKLEKQKE-----DYVEQISSLRQDHEDEVRKLRQSHELDLEGIRQAKMVELSAVQDHGNYLDTLRLASSNLQ 541
Cdd:COG1196 380 ELEELAEELLEALRAaaelaAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 542 ELRDGMSDNQERERQLEARERRLADQERRLKMDEETADDEKRRLMELVS-----TLELQLGRLSKESAEENWQLRQRMSS 616
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEgvkaaLLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 617 LEAErkAFEREKEFHREQMQRDEKRVEDLKALQLAEMERLHHDLQEERNQLTVERQQIELRQQLNEHGDPDRDRRELEAQ 696
Cdd:COG1196 540 LEAA--LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYV 617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 697 LQV-----------AREAIRRADEERDRYHKLQREMEQRKRHLLDKEHALNLKEDELGQATGAYRLATSRQHLAEQKARE 765
Cdd:COG1196 618 LGDtllgrtlvaarLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 24662907 766 ADQLLQAKLKVMAKRAQEIAEKEAQLAHERMLVAQDRMALVNL 808
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEE 740
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
289-811 |
6.87e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 6.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 289 LESNHKFNALQQQEAQLVIAAQMKSQERTLLEMQRRQEDQDRKFQALIQQQLqrqQQMEEHIKGQQERINMHLQlmmsqp 368
Cdd:COG1196 225 LEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL---EELELELEEAQAEEYELLA------ 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 369 vRVQDVVStpplvekpEPEPERKEHHKATSQEQEHLLLLEMDAKRNLLEKQRLDELVANmkvnyEQEIEMIDSSYKKQIK 448
Cdd:COG1196 296 -ELARLEQ--------DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE-----LEEAEEELEEAEAELA 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 449 VLEEHLSVVEKRLKDENSELRQYYIEKLEKQKE-----DYVEQISSLRQDHEDEVRKLRQSHELDLEGIRQAKMVELSAV 523
Cdd:COG1196 362 EAEEALLEAEAELAEAEEELEELAEELLEALRAaaelaAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 524 QDHGNYLDTLRLASSNLQELRDGMSDNQERERQLEARERRLADQERRLKMDEETADDEKRRLMELVS-----TLELQLGR 598
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEgvkaaLLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 599 LSKESAEENWQLRQRMSSLEAErkAFEREKEFHREQMQRDEKRVEDLKALQLAEMERLHHDLQEERNQLTVERQQIELRQ 678
Cdd:COG1196 522 LAGAVAVLIGVEAAYEAALEAA--LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 679 QLNEHgdpDRDRRELEAQLQVAREAIRRADEERDRYHKLQREMEQRKRHLLDKEHALNLKEDELGQATGAYRLATSRQHL 758
Cdd:COG1196 600 AVDLV---ASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLE 676
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 24662907 759 AEQKAREADQLLQAKLKVMAKRAQEIAEKEAQLAHERMLVAQDRMALVNLKKQ 811
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ 729
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
555-813 |
1.05e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 555 RQLEARERRLADQERRLKMDEETADDEKRR-------LMELVSTLELQLGRLSKES---AEENWQLRQRMSSLEAERKAF 624
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRienrldeLSQELSDASRKIGEIEKEIeqlEQEEEKLKERLEELEEDLSSL 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 625 EREKEFHREQMQRDEKRvedlkalqLAEMERLHHDLQEERNQLTVERQQIELRQQLNEHGDPDRDRRELEAQLQVAREAI 704
Cdd:TIGR02169 750 EQEIENVKSELKELEAR--------IEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 705 RR-------ADEERDRYHKLQREMEQRKRHLLDKEHALNLKEDELGQATGAYRLATsRQHLAEQKAREADQL-LQAKLKV 776
Cdd:TIGR02169 822 NRltlekeyLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL-RDLESRLGDLKKERDeLEAQLRE 900
|
250 260 270
....*....|....*....|....*....|....*..
gi 24662907 777 MAKRAQEIaekEAQLAHERMLVAQDRMALVNLKKQIS 813
Cdd:TIGR02169 901 LERKIEEL---EAQIEKKRKRLSELKAKLEALEEELS 934
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
418-677 |
1.74e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 1.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 418 KQRLDELVANMKVNYEQ------EIEMID---SSYKKQIKVLEEHLSVVEKRLKDENSELRQY--YIEKLEKQKEDYVEQ 486
Cdd:TIGR02169 701 ENRLDELSQELSDASRKigeiekEIEQLEqeeEKLKERLEELEEDLSSLEQEIENVKSELKELeaRIEELEEDLHKLEEA 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 487 ISSLRQDH--------EDEVRKLRQSHElDLEGIRQAKMVELSAVQDHGNYLDTLRLASSNLQ-ELRDGMSDNQERERQL 557
Cdd:TIGR02169 781 LNDLEARLshsripeiQAELSKLEEEVS-RIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRiDLKEQIKSIEKEIENL 859
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 558 EARERRLADQERRLKMDEETADDEKRRLMELVSTLELQLGRLSKESAEENWQ---LRQRMSSLEAERKA-FEREKEFHR- 632
Cdd:TIGR02169 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQiekKRKRLSELKAKLEAlEEELSEIEDp 939
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24662907 633 ------------------EQMQRDEKRVEDL-----KALQ-LAEMERLHHDLQEERNQLTVERQQIELR 677
Cdd:TIGR02169 940 kgedeeipeeelsledvqAELQRVEEEIRALepvnmLAIQeYEEVLKRLDELKEKRAKLEEERKAILER 1008
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
433-765 |
2.83e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 2.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 433 EQEIEMIDSSYKKQIKVLEEHLSVVEK--RLKDENSELRQYYI----EKLEKQKEDYVEQISSLRQdHEDEVRKLRQSHE 506
Cdd:TIGR02169 186 IERLDLIIDEKRQQLERLRREREKAERyqALLKEKREYEGYELlkekEALERQKEAIERQLASLEE-ELEKLTEEISELE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 507 LDLEGIRQaKMVELSAVQDHGNYLDTLRLASsnlqELRDGMSDNQERERQLEARERRLADQERRLKMDEETADDEKRRLM 586
Cdd:TIGR02169 265 KRLEEIEQ-LLEELNKKIKDLGEEEQLRVKE----KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 587 ELVSTLELQLGRLSKESAEENwQLRQRMSSLEAERKAFERE-KEFHREQMQRdEKRVEDLKAlQLAEMERLHHDLQEERN 665
Cdd:TIGR02169 340 ELEREIEEERKRRDKLTEEYA-ELKEELEDLRAELEEVDKEfAETRDELKDY-REKLEKLKR-EINELKRELDRLQEELQ 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 666 QLTVERQQIElrqqlNEHGDPDRDRRELEAQLQVAREAIRRADEERDRyhkLQREMEQRKRHLLDKEHALNLKEDELGQA 745
Cdd:TIGR02169 417 RLSEELADLN-----AAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ---LAADLSKYEQELYDLKEEYDRVEKELSKL 488
|
330 340
....*....|....*....|
gi 24662907 746 TGAYRLATSRQHLAEQKARE 765
Cdd:TIGR02169 489 QRELAEAEAQARASEERVRG 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
608-796 |
8.94e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 8.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 608 WQLRQRMSSLEAERKAFEREKEFHREQMQRDEKRVEDLKALQLAEmERLHHDLQEERNQLTVERQQIELRQQLNEHGDPD 687
Cdd:COG4913 606 FDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAL-QRLAEYSWDEIDVASAEREIAELEAELERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 688 RDRRELEAQLQVAREAIRRADEERDRYHKLQREMEQRKRHLLDKEHALnlkEDELGQATGAYRLATsRQHLAEQKAREAD 767
Cdd:COG4913 685 DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDEL---QDRLEAAEDLARLEL-RALLEERFAAALG 760
|
170 180
....*....|....*....|....*....
gi 24662907 768 QLLQAKLKVMAKRAQEIAEKEAQLAHERM 796
Cdd:COG4913 761 DAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
554-791 |
1.01e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 554 ERQLEARERRLADQERRLKMDEETADDEKRRLMelvstlelQLGRLsKESAEENWQLRQRMSSLEAERKAFEREkeFHRE 633
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQIE--------LLEPI-RELAERYAAARERLAELEYLRAALRLW--FAQR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 634 QMQRDEKRVEDLKAlQLAEMERLHHDLQEERNQLTVERQqiELRQQLNEHGDpdRDRRELEAQLQVAREAIRRADEERDR 713
Cdd:COG4913 289 RLELLEAELEELRA-ELARLEAELERLEARLDALREELD--ELEAQIRGNGG--DRLEQLEREIERLERELEERERRRAR 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 714 YHKLQREMEQR----KRHLLDKEHALNLKEDELGQATGAYRLATSRQHLAEQKAREADQLLQAKLKVMAKRAQEIAEKEA 789
Cdd:COG4913 364 LEALLAALGLPlpasAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLL 443
|
..
gi 24662907 790 QL 791
Cdd:COG4913 444 AL 445
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
632-797 |
1.72e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 1.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 632 REQMQRDEKRVEDLKALQlAEMERLHHDLQEERNQLTVERQQIELRQQLNEHGDPDRDRRELEAQLQVAREAIRRADEER 711
Cdd:COG4717 77 EEELKEAEEKEEEYAELQ-EELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 712 DRYHKLQREMEQRKRHLLDKEHALNLKEDELGQATGAY--RLATSRQHLAEQKAREADQLLQAKLKVMAKRaQEIAEKEA 789
Cdd:COG4717 156 EELRELEEELEELEAELAELQEELEELLEQLSLATEEElqDLAEELEELQQRLAELEEELEEAQEELEELE-EELEQLEN 234
|
....*...
gi 24662907 790 QLAHERML 797
Cdd:COG4717 235 ELEAAALE 242
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
413-771 |
2.69e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 2.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 413 RNLLEKQRLDELVANMKVNYEQEIEMIDSSYKKQIKVLEEHLSVVEKRlkdENSELRQYYIEKLEKQKEDYVEQisslrq 492
Cdd:pfam02463 135 YNFLVQGGKIEIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEET---ENLAELIIDLEELKLQELKLKEQ------ 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 493 dHEDEVRKLRQSHELDLEGIRQAKMVELsavQDHGNYLDTLRLASSNLQELRDGMSDNQERERQLEARERRLADQERRLK 572
Cdd:pfam02463 206 -AKKALEYYQLKEKLELEEEYLLYLDYL---KLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEK 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 573 MDEETADDEKRRLMELVSTLELQLGRLS-------KESAEENWQLRQRMSSLEAERKAFEREKEFHREQMQRDEKRVEDL 645
Cdd:pfam02463 282 KLQEEELKLLAKEEEELKSELLKLERRKvddeeklKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEEL 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 646 KALQLAEMERL------HHDLQEERNQLTVERQQIELRQQLNEHGDPDRD---RRELEAQLQVAREAIRRADEERDRYHK 716
Cdd:pfam02463 362 EKLQEKLEQLEeellakKKLESERLSSAAKLKEEELELKSEEEKEAQLLLelaRQLEDLLKEEKKEELEILEEEEESIEL 441
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 24662907 717 LQREMEQRKRHLLDKEHALNLKEDELGQATGAYRLATSRQHLAEQKAREADQLLQ 771
Cdd:pfam02463 442 KQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLE 496
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
417-810 |
2.87e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 2.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 417 EKQRLDELVANMKvNYEQEIEMIDSSYKKQIKVLEEHLSVVEKRLKDENSELRQYYIEKLEKQKEDYVEQISSLRQdHED 496
Cdd:COG4717 93 LQEELEELEEELE-ELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEE-LEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 497 EVRKLRQSHELDLEGIRQAKMVELSavqdhgNYLDTLRLASSNLQELRDGMSDNQERERQLEARERRLADQERRLKmDEE 576
Cdd:COG4717 171 ELAELQEELEELLEQLSLATEEELQ------DLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAA-LEE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 577 TADDEKRRLMELVSTLELQLGRLSKESAEEN-----------------WQLRQRMSSLE--AERKAFEREKEFHREQMQR 637
Cdd:COG4717 244 RLKEARLLLLIAAALLALLGLGGSLLSLILTiagvlflvlgllallflLLAREKASLGKeaEELQALPALEELEEEELEE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 638 DEKRV---EDLKALQLAEMERLHHDLQEERNQLTVERQQIELRQQLNEhgdpdrdRRELEAQLQVA-REAIRRADEERDR 713
Cdd:COG4717 324 LLAALglpPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQE-------IAALLAEAGVEdEEELRAALEQAEE 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 714 YHKLQREMEQRKRHLLDKEHALNLKEDELGQATGAYRLATSRQHLAE-----QKAREADQLLQAKLKVM------AKRAQ 782
Cdd:COG4717 397 YQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEEleeelEELREELAELEAELEQLeedgelAELLQ 476
|
410 420
....*....|....*....|....*...
gi 24662907 783 EIAEKEAQLAHERMLVAQDRMALVNLKK 810
Cdd:COG4717 477 ELEELKAELRELAEEWAALKLALELLEE 504
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
554-819 |
3.00e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.28 E-value: 3.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 554 ERQLEARERRLADQERRLKMDEETADDEKRRLMElvstlelqlgrlSKESAEENWQLRQRMSSLEAERKAFEREKEFHRE 633
Cdd:pfam17380 286 ERQQQEKFEKMEQERLRQEKEEKAREVERRRKLE------------EAEKARQAEMDRQAAIYAEQERMAMERERELERI 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 634 QMQRDEKRVEDLKALQLA-EMERLHHdlqeernqltVERQQIElRQQLNEhgdpdRDRRELEAQLQVA------REAIRR 706
Cdd:pfam17380 354 RQEERKRELERIRQEEIAmEISRMRE----------LERLQME-RQQKNE-----RVRQELEAARKVKileeerQRKIQQ 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 707 ADEERDRYHKLQREMEQRKRHLLDKEHALNLKEDELGQATGAYRLATSRQHLAEQKAREAD-QLLQAKLKVMAKRAQEIA 785
Cdd:pfam17380 418 QKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLElEKEKRDRKRAEEQRRKIL 497
|
250 260 270
....*....|....*....|....*....|....
gi 24662907 786 EKEAQLAHERMLVAQDRMALvnLKKQISRSRCAI 819
Cdd:pfam17380 498 EKELEERKQAMIEEERKRKL--LEKEMEERQKAI 529
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
418-814 |
3.46e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 3.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 418 KQRLDELvANMKVNYEQEIEMIDSSYKK--QIKVLEEHLSVVEKRLKDENSELRQYYIEKLEKQKEDYVEQISSLRqDHE 495
Cdd:PRK03918 337 EERLEEL-KKKLKELEKRLEELEERHELyeEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKIT-ARI 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 496 DEVRKLRQSHELDLEGIRQAKMV------ELSavQDHgnYLDTLRLASSNLQELRDGMSDNQERERQLEARERRLA---D 566
Cdd:PRK03918 415 GELKKEIKELKKAIEELKKAKGKcpvcgrELT--EEH--RKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEkvlK 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 567 QERRLKMDEETADdekrrlmeLVSTLELQLGRLSKESAEENWQ----LRQRMSSLEAERKAFEREKEfhreqmqrdekRV 642
Cdd:PRK03918 491 KESELIKLKELAE--------QLKELEEKLKKYNLEELEKKAEeyekLKEKLIKLKGEIKSLKKELE-----------KL 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 643 EDLKAlQLAEMERLHHDLQEERNqltverqqiELRQQLNEHGDPDRDrrELEAQLQVAREAIRRADEERDRYHKLQREME 722
Cdd:PRK03918 552 EELKK-KLAELEKKLDELEEELA---------ELLKELEELGFESVE--ELEERLKELEPFYNEYLELKDAEKELEREEK 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 723 QRK---RHLLDKEHALNLKEDELGQATGayRLATSRQHLAEQKAREADQL----------LQAKLKVMAKRAQEIAEKEA 789
Cdd:PRK03918 620 ELKkleEELDKAFEELAETEKRLEELRK--ELEELEKKYSEEEYEELREEylelsrelagLRAELEELEKRREEIKKTLE 697
|
410 420
....*....|....*....|....*
gi 24662907 790 QLAHERMLVAQDRMALVNLKKQISR 814
Cdd:PRK03918 698 KLKEELEEREKAKKELEKLEKALER 722
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
444-706 |
7.41e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 7.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 444 KKQIKVLEEHLSVVEKRLKDENSElrqyyIEKLEKQKEDYVEQISSLRQDHEdevrklRQSHELDLEGIRQakmvELSAV 523
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEER-----LEALEAELDALQERREALQRLAE------YSWDEIDVASAER----EIAEL 673
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 524 QDHgnyLDTLRLASSNLQELRDGMSDNQERERQLEARERRLADQERRLKMDEETADDEKRRLMELVSTLELQLGRLSKES 603
Cdd:COG4913 674 EAE---LERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL 750
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 604 AEENWQLRQRMSSLEAERKAFEREKEFHREQMQRDEKRVEDL-----------------KALQLAEMERLHHDLQEERnq 666
Cdd:COG4913 751 LEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAmrafnrewpaetadldaDLESLPEYLALLDRLEEDG-- 828
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 24662907 667 ltVERQQIELRQQLNEHGdpDRDRRELEAQLQVAREAIRR 706
Cdd:COG4913 829 --LPEYEERFKELLNENS--IEFVADLLSKLRRAIREIKE 864
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
551-818 |
1.06e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.45 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 551 QERERQLEARERRLADQERRLKMDEETADDEKRRLMELVSTLELQLGRLSKESAEENWQLRQRMSSLEAERKAFEREKEF 630
Cdd:pfam12128 247 QQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 631 HREQMQR-DEKRVEDLKALQ---------LAEMERLHHDLQEERNQLTVERQQIELRQQLNEHGDPDRDRRELEAQlqva 700
Cdd:pfam12128 327 LEDQHGAfLDADIETAAADQeqlpswqseLENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKI---- 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 701 REAI-RRADEERDRYHKLQ----REMEQRKRHLLDKEHALNLKedeLGQATGAYRLATSRQHLAEQKAREADQLLQAKLK 775
Cdd:pfam12128 403 REARdRQLAVAEDDLQALEselrEQLEAGKLEFNEEEYRLKSR---LGELKLRLNQATATPELLLQLENFDERIERAREE 479
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 24662907 776 VMAKRA-QEIAEKEAQLAHERMLVAQDRMALVNLKKQISRSRCA 818
Cdd:pfam12128 480 QEAANAeVERLQSELRQARKRRDQASEALRQASRRLEERQSALD 523
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
387-783 |
1.39e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 387 EPERKEHHKATSQEQEHLLLLEMDAKRNLLEK-QRLDELVANMKVNYEQEIEMIDSSYKKQIKVLEEHLSVVEKRLKDEN 465
Cdd:COG4717 133 ELEALEAELAELPERLEELEERLEELRELEEElEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 466 SELRQYYIEKLEKQKEdyVEQISSLRQDHEDEVRKLRQSHELDLEGIRQAKMVELSAVQDHGNYLDTLRLASSNLQELRD 545
Cdd:COG4717 213 EELEEAQEELEELEEE--LEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLF 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 546 GMSDNQERERQLEARERRLADQERRLkmdeetaddEKRRLMELVSTLELqLGRLSKESAEENW----QLRQRMSSLEAER 621
Cdd:COG4717 291 LLLAREKASLGKEAEELQALPALEEL---------EEEELEELLAALGL-PPDLSPEELLELLdrieELQELLREAEELE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 622 KAFEREKEFHREQMQRDEKRVEDLKAL-QLAEMERLHHDLQEERNQLtveRQQIELRQQLNEHGDPDRDRRELEAQLQVA 700
Cdd:COG4717 361 EELQLEELEQEIAALLAEAGVEDEEELrAALEQAEEYQELKEELEEL---EEQLEELLGELEELLEALDEEELEEELEEL 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 701 REAIRRADEERDRYHKLQREMEQRKRHLLDkehalnlkEDELGQATGAYRLATSRQHLAEQKAReADQLLQAKLKVMAKR 780
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQLEE--------DGELAELLQELEELKAELRELAEEWA-ALKLALELLEEAREE 508
|
...
gi 24662907 781 AQE 783
Cdd:COG4717 509 YRE 511
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
392-686 |
1.60e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.97 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 392 EHHKATSQEQEHLlllEMDAKRNLlEKQRLDELVANMKVNYEQEIEMiDSSYKKQIKVLEEHLSVVEKRLKDENSELRQY 471
Cdd:pfam17380 330 DRQAAIYAEQERM---AMEREREL-ERIRQEERKRELERIRQEEIAM-EISRMRELERLQMERQQKNERVRQELEAARKV 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 472 YIEKLEKQK--EDYVEQISSLRQDHED----EVRKLRQSHELDLEGIRQAKMvelsavqDHGNYLDTLRLASSNLQELRD 545
Cdd:pfam17380 405 KILEEERQRkiQQQKVEMEQIRAEQEEarqrEVRRLEEERAREMERVRLEEQ-------ERQQQVERLRQQEEERKRKKL 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 546 GMsDNQERERQLEARERR-------------LADQERRLKMDEETADDEKRRLMELVSTLELQLGRLSKESAEENWQLRQ 612
Cdd:pfam17380 478 EL-EKEKRDRKRAEEQRRkilekeleerkqaMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQE 556
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24662907 613 RMSSLEAER---KAFEREKEFHREQMQRDEKRVEDLKALQLAEMERLHHDLQEERNQLTVERQQIELRQQLNEHGDP 686
Cdd:pfam17380 557 QMRKATEERsrlEAMEREREMMRQIVESEKARAEYEATTPITTIKPIYRPRISEYQPPDVESHMIRFTTQSPEWATP 633
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
381-812 |
1.64e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 381 VEKPEPEPERKEHHKATSQEQEHllllEMDAKRNLLEKQRLDElvANMKVNYEQEIEMIDSSYKKQIKVLEEHLSVVEKR 460
Cdd:PTZ00121 1410 LKKAAAAKKKADEAKKKAEEKKK----ADEAKKKAEEAKKADE--AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK 1483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 461 LKDEnselrqyyiekLEKQKEDYVEQISSLRQDHE-----DEVRKLRQSHELDlegirQAKMVELSAVQDHGNYLDTLRL 535
Cdd:PTZ00121 1484 KADE-----------AKKKAEEAKKKADEAKKAAEakkkaDEAKKAEEAKKAD-----EAKKAEEAKKADEAKKAEEKKK 1547
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 536 AssnlQELRDGmsdnqerERQLEARERRLADQERRlkmdeetadDEKRRLMELVSTLELQlgRLSKESAEENWQLRQRMS 615
Cdd:PTZ00121 1548 A----DELKKA-------EELKKAEEKKKAEEAKK---------AEEDKNMALRKAEEAK--KAEEARIEEVMKLYEEEK 1605
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 616 SLEAERKAFEREKEFHREQMQRDE---KRVEDLKALQlAEMERLHHDLQEERNQLTVERQQieLRQQLNEHGDPDRDRRE 692
Cdd:PTZ00121 1606 KMKAEEAKKAEEAKIKAEELKKAEeekKKVEQLKKKE-AEEKKKAEELKKAEEENKIKAAE--EAKKAEEDKKKAEEAKK 1682
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 693 LEAQLQVAREAIRRADEERDRYHKLQREMEQRKRhllDKEHALNLKEDELGQATGAYRLATSRQHLAEQ-KAREADQLLQ 771
Cdd:PTZ00121 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK---KAEELKKAEEENKIKAEEAKKEAEEDKKKAEEaKKDEEEKKKI 1759
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 24662907 772 AKLKVMAKRAQEIAEKEAQLAHERMLVAQDRMALVNLKKQI 812
Cdd:PTZ00121 1760 AHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
610-882 |
1.86e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 610 LRQRMSSLEAERKAFEREKEFHreqmqrdekrvEDLKALQLAEMERLHHDLQEERNQLtvERQQIELRQQLNEHgdpDRD 689
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYKELK-----------AELRELELALLVLRLEELREELEEL--QEELKEAEEELEEL---TAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 690 RRELEAQLQVAREAIRRADEERDRYHK-------LQREMEQRKRHLLDKEHALNLKEDELGqatgaYRLATSRQHLAEQK 762
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKelyalanEISRLEQQKQILRERLANLERQLEELE-----AQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 763 AREADqlLQAKLKVMAKraqEIAEKEAQLAHERMLVAQDRMALVNLKKQISRSRCAICKMGAE----SAEIAQRRANVNP 838
Cdd:TIGR02168 337 EELAE--LEEKLEELKE---ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQiaslNNEIERLEARLER 411
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 24662907 839 TAATDLQLPQVTPSHAELLLKMSQEPGQVQSDIVDRMLDENIEA 882
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE 455
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
650-793 |
2.29e-05 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 47.35 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 650 LAEMERLHHDLQEERNQLTVERQQIELRQQLNEHGDPdRDRRELEAQLQVAREAIRRADEERDRYHKLQremeqrKRHLL 729
Cdd:COG1566 73 LARLDPTDLQAALAQAEAQLAAAEAQLARLEAELGAE-AEIAAAEAQLAAAQAQLDLAQRELERYQALY------KKGAV 145
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24662907 730 DKEhALNLKEDELGQATGAYRLATSRQHLAEQKAREADQLLQAKLKVMAKRAQeIAEKEAQLAH 793
Cdd:COG1566 146 SQQ-ELDEARAALDAAQAQLEAAQAQLAQAQAGLREEEELAAAQAQVAQAEAA-LAQAELNLAR 207
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
299-731 |
2.92e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 2.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 299 QQQEAQLVIAAQMKSQERTLLEMQRRQEDQDRKfqalIQQQLQRQQQMEEHIKGQQERINMHLQLMMSQPVRVQDvvstp 378
Cdd:COG1196 362 EAEEALLEAEAELAEAEEELEELAEELLEALRA----AAELAAQLEELEEAEEALLERLERLEEELEELEEALAE----- 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 379 pLVEKPEpepERKEHHKATSQEQEHLLLLEMDAKRNLLEKQRLDELVANMKVNYEQEIEMIDSSYKKQIKVLEEHL---- 454
Cdd:COG1196 433 -LEEEEE---EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgfle 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 455 SVVEKRLKDENSELRQYYIEKLEKQKEDYVEQISSLRQDHEDEVRKLRQSHELDLEGIRQAKMVELSAVQDHGNYLDTLR 534
Cdd:COG1196 509 GVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAAL 588
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 535 LASSNLQELRDGMSDNQERERQLEARERRLADQERRLKMDEETADDEKRRLMELVSTLE---------LQLGRLSKESAE 605
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRevtlegeggSAGGSLTGGSRR 668
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 606 ENWQLRQRMSSLEAERKAFEREKEFHREQMQRDEKRVEDLKALQLAEMERLHHDLQEERNQLTVERQQIELRQQLNEHGD 685
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24662907 686 PDR---------DRRELEAQLQVAREAIRR-------ADEErdryhklQREMEQRKRHLLDK 731
Cdd:COG1196 749 EEEaleelpeppDLEELERELERLEREIEAlgpvnllAIEE-------YEELEERYDFLSEQ 803
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
389-655 |
2.93e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 2.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 389 ERKEHHKATSQEQEHLLLlemdaKRNLLEKQRLDELVANMKVNyEQEIEMIDSSYKKQIKVLEehlsvVEKRLKDENSEL 468
Cdd:PRK03918 444 ELTEEHRKELLEEYTAEL-----KRIEKELKEIEEKERKLRKE-LRELEKVLKKESELIKLKE-----LAEQLKELEEKL 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 469 RQYYIEKLEKQKEDYVE----------QISSLRQDHEDE----------VRKLRQSHELDLEGIRQAKMVELSAVQDHGN 528
Cdd:PRK03918 513 KKYNLEELEKKAEEYEKlkekliklkgEIKSLKKELEKLeelkkklaelEKKLDELEEELAELLKELEELGFESVEELEE 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 529 YLDTLRLASSNLQELRDGmsdnqerERQLEARERRLADQERRLKMDEETADDEKRRLMELVSTLELQLGRLSKESAEEnw 608
Cdd:PRK03918 593 RLKELEPFYNEYLELKDA-------EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEE-- 663
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 24662907 609 qLRQRMSSLEAERKAFEREKEFHREQMQRDEKRVEDLKAlQLAEMER 655
Cdd:PRK03918 664 -LREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE-ELEEREK 708
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
418-811 |
3.11e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.73 E-value: 3.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 418 KQRLDELVANMKvNYEQEIEMIDSSYKKQIKVLEEHLSVVEK--RLKDENSELRQYyIEKLEKQKEDYVEQISSLRQ--- 492
Cdd:PRK02224 212 ESELAELDEEIE-RYEEQREQARETRDEADEVLEEHEERREEleTLEAEIEDLRET-IAETEREREELAEEVRDLRErle 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 493 DHEDEVRKLRQSHELDlEGIRQAKMVELSAVQDHGNYL-DTLRLASSNLQELRDGMSDNQERERQLEARERRLADQERRL 571
Cdd:PRK02224 290 ELEEERDDLLAEAGLD-DADAEAVEARREELEDRDEELrDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAEL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 572 KMDEETADDEKRRLMELVSTLElqlgrlskesaeenwqlrqrmSSLEAERKAFEREKEfhreqmQRDEkrVEDLKALQLA 651
Cdd:PRK02224 369 ESELEEAREAVEDRREEIEELE---------------------EEIEELRERFGDAPV------DLGN--AEDFLEELRE 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 652 EMERLHHDLQEERNQLTVERQQIELRQQLNEHGDPDRDRRELEAQLQVAreairRADEERDRYHKLQREMEQRKRHLLDK 731
Cdd:PRK02224 420 ERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVE-----TIEEDRERVEELEAELEDLEEEVEEV 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 732 EHALNLKEDELGQATGAYRLATSRQHLAEQKAREADQLLQAKLKVMAKRAQ--------EIAEKEAQLAHERMLVAQDRM 803
Cdd:PRK02224 495 EERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERaaeleaeaEEKREAAAEAEEEAEEAREEV 574
|
....*...
gi 24662907 804 ALVNLKKQ 811
Cdd:PRK02224 575 AELNSKLA 582
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
473-649 |
3.32e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 3.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 473 IEKLEKQKEDYVEQISSLRQDhEDEVRKLRQSHElDLEGIRQAKMVELSAVQDHGNYLDTLRLassnLQELRDGMSDNQE 552
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAEL-QEELEELEEELE-ELEAELEELREELEKLEKLLQLLPLYQE----LEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 553 RERQLEARERRLADQERRLKMDEETADDEKRRLMELVSTLELQLGRLSKESAEENWQLRQRMSSLEAERKAFEREKEFHR 632
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELE 226
|
170
....*....|....*..
gi 24662907 633 EQMQRDEKRVEDLKALQ 649
Cdd:COG4717 227 EELEQLENELEAAALEE 243
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
632-836 |
4.44e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 4.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 632 REQMQRDEKRVEDLKAL-----QLAEMERLHHDLQEERNQLTVERQQIELRQQLNEHGDPDRDRRELEAQLQVAREAIRR 706
Cdd:COG4913 241 HEALEDAREQIELLEPIrelaeRYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 707 ADEERDRYHKLQREMEQRKRHLLDKE-HALNLKEDELGQATGAYRLATSRQHLAEQKAREADQLLQAKLKVMAKRAQEIA 785
Cdd:COG4913 321 LREELDELEAQIRGNGGDRLEQLEREiERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEEL 400
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 24662907 786 EKEAQLAHERmlvaqdRMALVNLKKQISRSRcaickmgAESAEIAQRRANV 836
Cdd:COG4913 401 EALEEALAEA------EAALRDLRRELRELE-------AEIASLERRKSNI 438
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
536-759 |
4.72e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 4.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 536 ASSNLQELRDGMSDNQERERQLEARERRLADQERRLKMDEETADDEKRRLMELVSTLELQLGRLSKESAEENWQLRQRMS 615
Cdd:COG4942 50 EKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPE 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 616 SLEaerkAFEREKEFHREQMQRDEKRVEDLKAlQLAEMERLHHDLQEERNQLTVERQQIElrqqlnehgdpdRDRRELEA 695
Cdd:COG4942 130 DFL----DAVRRLQYLKYLAPARREQAEELRA-DLAELAALRAELEAERAELEALLAELE------------EERAALEA 192
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24662907 696 QLQVAREAIRRADEERDRYHKLQREMEQRKRHLLDKEHALNLKEDELGQATGAYRLATSRQHLA 759
Cdd:COG4942 193 LKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
444-735 |
5.64e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 5.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 444 KKQIKVLEEHLSVVEKRLKDENSELR--QYYIEKLEKQKEDYVEQISSLRQDHEDEVRKLRQSHEL-----------DLE 510
Cdd:PRK02224 383 REEIEELEEEIEELRERFGDAPVDLGnaEDFLEELREERDELREREAELEATLRTARERVEEAEALleagkcpecgqPVE 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 511 GIRQAKMVELS--AVQDHGNYLDTLRLASSNLQELRDGMSDNQERERQLEARERRLADQERRLKMDEETADDEKRRLmel 588
Cdd:PRK02224 463 GSPHVETIEEDreRVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERA--- 539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 589 vSTLELQLGRLSKESAEENWQLRQRMSSLEAER---KAFEREKEFHREQMQRDEKRVEDLKAlqLAEMERLHHDLQEERN 665
Cdd:PRK02224 540 -EELRERAAELEAEAEEKREAAAEAEEEAEEAReevAELNSKLAELKERIESLERIRTLLAA--IADAEDEIERLREKRE 616
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24662907 666 QLTverqqiELRQQLNEHGDPDRDR-RELEAQLQVAReaIRRADEERDRYHKLQREMEQRKRHLLDKEHAL 735
Cdd:PRK02224 617 ALA------ELNDERRERLAEKRERkRELEAEFDEAR--IEEAREDKERAEEYLEQVEEKLDELREERDDL 679
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
601-841 |
7.23e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 7.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 601 KESAEENWQLRQRMSSLEAERKAFEREKEFHREQMQRDEKRVEDLKAlQLAEMERLHHDLQEERNQLtvERQQIELRQQL 680
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR-RIRALEQELAALEAELAEL--EKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 681 NEHgdpdrdRRELEAQLqvaREAIRRADEERDRYHKLQREMEQRKRHL-LDKEHALNLKEDELGQATGAYRLATSRQHLA 759
Cdd:COG4942 100 EAQ------KEELAELL---RALYRLGRQPPLALLLSPEDFLDAVRRLqYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 760 EQKArEADQLLQAKLKVMAKRAQEIAEKEAQLAHERMLVAQDRMALVNLKKQISRSRCAICKMGAESAEIAQRRANVNPT 839
Cdd:COG4942 171 AERA-ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFA 249
|
..
gi 24662907 840 AA 841
Cdd:COG4942 250 AL 251
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
549-833 |
7.62e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 7.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 549 DNQERERQLEARERRLADQERRLKMDEETADDEKRRLMELVSTLELQLGRLSKESAEENWQLRQRMSSLEAERKAFEREK 628
Cdd:PTZ00121 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 629 EFHREQMQRDEKRVEDLKALQLAEMERLHHDLQEERNQLT------VERQQIELRQQLNEHGDPDRDRRELEAQLQVARE 702
Cdd:PTZ00121 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAekkkeeAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE 1409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 703 aIRRADEERDRYHKLQREMEQ-RKRHLLDKEHALNLKEDELGQATGAYRLATSrqhlAEQKAREADQLLQAKLKVMAKRA 781
Cdd:PTZ00121 1410 -LKKAAAAKKKADEAKKKAEEkKKADEAKKKAEEAKKADEAKKKAEEAKKAEE----AKKKAEEAKKADEAKKKAEEAKK 1484
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 24662907 782 QEIAEKEAQLAHERmlvAQDRMALVNLKKQISRSRCAICKMGAESAEIAQRR 833
Cdd:PTZ00121 1485 ADEAKKKAEEAKKK---ADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEA 1533
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
558-710 |
8.08e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.39 E-value: 8.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 558 EARERRLADQERRLKMDEETADDEKRRLMELVSTLELQLGRLSKESAEenwqLRQRMSSLEAERKAFEREKEFHREQMQR 637
Cdd:COG2433 384 ELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEE----LEAELEEKDERIERLERELSEARSEERR 459
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24662907 638 DEKRVEDLKALQlAEMERLHHDLQEERNQL-TVERQQIELRQQLN-EHGDPDRDRRELEaqlQVAREAIRRADEE 710
Cdd:COG2433 460 EIRKDREISRLD-REIERLERELEEERERIeELKRKLERLKELWKlEHSGELVPVKVVE---KFTKEAIRRLEEE 530
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
477-882 |
9.57e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 9.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 477 EKQKEDYVEQISSLRQDHEDEVRKLRQSHELDLEGIRQAKMVELSAVQ-----DHGNYLDTLRLASS--NLQELRDGMSD 549
Cdd:PTZ00121 1222 DAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQaaikaEEARKADELKKAEEkkKADEAKKAEEK 1301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 550 NQERERQLEARERRLADQERRlkmdeeTADDEKRRLMELVSTLELQLGRLSKESAEENwQLRQRMSSLEAERKAFEREKE 629
Cdd:PTZ00121 1302 KKADEAKKKAEEAKKADEAKK------KAEEAKKKADAAKKKAEEAKKAAEAAKAEAE-AAADEAEAAEEKAEAAEKKKE 1374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 630 FHREQMQRDEKRVEDLKALQLAE--MERLHHDLQEERNQLTVERQQIELRQQLNEHGDPDRDRRELEaQLQVAREAIRRA 707
Cdd:PTZ00121 1375 EAKKKADAAKKKAEEKKKADEAKkkAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE-EAKKADEAKKKA 1453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 708 DEERDRYHKLQREMEQRKRHLLDKEHALNLKEDELGQATGAYRLATSRQHLAEQKAREADQLLQAKLKVMAKRAQEIAEK 787
Cdd:PTZ00121 1454 EEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEA 1533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 788 ----EAQLAHERMLVAQDRMAlVNLKKQISRSRCAICKMGAESAEIAQRRANVnptaatdlqLPQVTPSHAELLLKMSQE 863
Cdd:PTZ00121 1534 kkadEAKKAEEKKKADELKKA-EELKKAEEKKKAEEAKKAEEDKNMALRKAEE---------AKKAEEARIEEVMKLYEE 1603
|
410
....*....|....*....
gi 24662907 864 PGQVQSDIVDRMLDENIEA 882
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKA 1622
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
549-724 |
1.05e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 549 DNQERERQLEARERRLADQERRLKMDEETADDEKRRLmelvSTLELQLGRLSKESAEEN--WQLRQRMSSLEAERKAFER 626
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDAL----QERREALQRLAEYSWDEIdvASAEREIAELEAELERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 627 EKEFHREQMQRDEKRVEDLKAL--QLAEMERLHHDLQEERNQLTVERQQIELRQQLNEHGDPDRDRRELEAQLQ------ 698
Cdd:COG4913 683 SSDDLAALEEQLEELEAELEELeeELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAaalgda 762
|
170 180
....*....|....*....|....*.
gi 24662907 699 VAREAIRRADEERDRYHKLQREMEQR 724
Cdd:COG4913 763 VERELRENLEERIDALRARLNRAEEE 788
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
467-794 |
1.66e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 467 ELRQYYIEKLEKQKEDYVEQISslrqdhEDEVRKLRQSHELDLEGIRQAKMVElsavqdhgnyldTLRLASSNLQELRDG 546
Cdd:PRK03918 175 KRRIERLEKFIKRTENIEELIK------EKEKELEEVLREINEISSELPELRE------------ELEKLEKEVKELEEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 547 MSDNQERERQLEARERRLADQERRLKMDEETADDEKRRLMElvstLELQLGRLS--KESAEENWQLRQRMSSLEAERKAF 624
Cdd:PRK03918 237 KEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE----LEEKVKELKelKEKAEEYIKLSEFYEEYLDELREI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 625 EREKEFHREQMQRDEKRVEDLKalqlaEMERLHHDLQEERNQLTVERQQIELRQQLNEhgdpdrDRRELEAQLQVAREai 704
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELE-----EKEERLEELKKKLKELEKRLEELEERHELYE------EAKAKKEELERLKK-- 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 705 RRADEERDRYHKLQREMEQRKRHLLDKEHALNLKEDELGQATGAYRLATSRQHLAEQK----AREADQ-----LLQ---A 772
Cdd:PRK03918 380 RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcGRELTEehrkeLLEeytA 459
|
330 340
....*....|....*....|..
gi 24662907 773 KLKVMAKRAQEIAEKEAQLAHE 794
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKE 481
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
297-682 |
2.92e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 297 ALQQQEAQLVIAAQMKSQERTLLEMQRRQEDQDRKFQALIQQQLQRQQQMEEHIKGQQERInmhlqlmmsqpvrvqdvvs 376
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL------------------- 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 377 tpplvekpepEPERKEHHKATSQEQEHLLLLEMdakrnllEKQRLDELVANMKVNYEQEIEMIDsSYKKQIKVLEEHLSV 456
Cdd:TIGR02168 760 ----------EAEIEELEERLEEAEEELAEAEA-------EIEELEAQIEQLKEELKALREALD-ELRAELTLLNEEAAN 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 457 VEKRLKDE--NSELRQYYIEKLEKQKEDYVEQISSLRQDHEDEVRKLRQSH-ELDLEGIRQAKMVElsavqdhgnYLDTL 533
Cdd:TIGR02168 822 LRERLESLerRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELEsELEALLNERASLEE---------ALALL 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 534 RLASSNLQ-ELRDGMSDNQERERQLEARERRLADQERRLKMDEETADDEKRRLMELVSTLELQLGRLSKESAEENWQLRQ 612
Cdd:TIGR02168 893 RSELEELSeELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARR 972
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24662907 613 RMSSLEAERKAFEREKEFHREQMQRDEKRVEDLKAlqlaemerLHHDLQEERNQL--TVERQQIELRQQLNE 682
Cdd:TIGR02168 973 RLKRLENKIKELGPVNLAAIEEYEELKERYDFLTA--------QKEDLTEAKETLeeAIEEIDREARERFKD 1036
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
533-702 |
3.10e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 3.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 533 LRLASSNLQELRD--GMSDNQERERQLEARERRLADQERRLKMDEETADDEKRRLMELVSTLELQLGRLSKESAEEnwQL 610
Cdd:COG3206 191 LEEAEAALEEFRQknGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQ--QL 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 611 RQRMSSLEAERKAF-EREKEFHrEQMQRDEKRVEDLKALQLAEMERLHHDLQEERNQLTVERQQI-----ELRQQLNEHG 684
Cdd:COG3206 269 RAQLAELEAELAELsARYTPNH-PDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLqaqlaQLEARLAELP 347
|
170
....*....|....*...
gi 24662907 685 DPDRDRRELEAQLQVARE 702
Cdd:COG3206 348 ELEAELRRLEREVEVARE 365
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
455-788 |
3.94e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 3.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 455 SVVEKRLKDENSEL-----RQYYIE-KLEKQKEDYVEQISSLRQDHEDEVRKLRQSHELDLEGIRQAKMVELSAVQDHGN 528
Cdd:pfam15921 220 SAISKILRELDTEIsylkgRIFPVEdQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQS 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 529 YLDTLRLASSN-----LQELRDGMSDNQERERQLEARERRLADQERRLKMDEETADDEkrrlmelVSTLELQLGRLSKES 603
Cdd:pfam15921 300 QLEIIQEQARNqnsmyMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSE-------LTEARTERDQFSQES 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 604 AEENWQLRQRMSSLEAERKAFEREKEFHREQMQRDE---------KRVEDLKALQLAEMERLHHDLQEErNQLTVERQQI 674
Cdd:pfam15921 373 GNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTgnsitidhlRRELDDRNMEVQRLEALLKAMKSE-CQGQMERQMA 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 675 ELrQQLNEHGDpdrDRRELEAQLQVAREAIRRADEErdrYHKLQREMEQRKRHLLDKEHALNLKEDELGQATGAYRLATS 754
Cdd:pfam15921 452 AI-QGKNESLE---KVSSLTAQLESTKEMLRKVVEE---LTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRS 524
|
330 340 350
....*....|....*....|....*....|....*...
gi 24662907 755 RQHLAEQKAR----EADQLLQAKLKVMAKRAQeIAEKE 788
Cdd:pfam15921 525 RVDLKLQELQhlknEGDHLRNVQTECEALKLQ-MAEKD 561
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
314-790 |
3.97e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 3.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 314 QERTLLEMQRRQEDQDRKFQALIQQQLQRQQQMEEHIKGQQERINMHlQLMMSQPVRVQDVVSTPPLVEKPEPEPERKEH 393
Cdd:TIGR00618 213 MPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQ-QLLKQLRARIEELRAQEAVLEETQERINRARK 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 394 HKATSQEQEHLLLLEMDAKRNLLEKQRLDELVANMKVNYEQEIEmiDSSYKKQIKVLEEHLSVVEKRLKDENSE------ 467
Cdd:TIGR00618 292 AAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK--QQSSIEEQRRLLQTLHSQEIHIRDAHEVatsire 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 468 -------LRQYyIEKLEKQKEDYVEQISSLRQDHEDEVRKLRQSHELDLE--GIRQAKMVELSAVQDHGNYLDTLRLASS 538
Cdd:TIGR00618 370 iscqqhtLTQH-IHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAfrDLQGQLAHAKKQQELQQRYAELCAAAIT 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 539 N-LQELRDGMSDNQERERQLEARERRLADQERRLKMDEETADDEKRRLMELvstlelqlgrlskesAEENWQLRQRMSSL 617
Cdd:TIGR00618 449 CtAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLEL---------------QEEPCPLCGSCIHP 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 618 EAERKAFErEKEFHREQMQRDEKRVEDLKAlqlaEMERLHHDLQEERNQLTVERQQIE-LRQQLNEHGDPDRDRRELEAQ 696
Cdd:TIGR00618 514 NPARQDID-NPGPLTRRMQRGEQTYAQLET----SEEDVYHQLTSERKQRASLKEQMQeIQQSFSILTQCDNRSKEDIPN 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 697 LQVAREAIRRADEERDRYHKLQREMEQrkRHLLDKEHALNLKEDELGQATGAYRLATSRQHLaeqkAREADQLLQAKLKV 776
Cdd:TIGR00618 589 LQNITVRLQDLTEKLSEAEDMLACEQH--ALLRKLQPEQDLQDVRLHLQQCSQELALKLTAL----HALQLTLTQERVRE 662
|
490
....*....|....
gi 24662907 777 MAKRAQEIAEKEAQ 790
Cdd:TIGR00618 663 HALSIRVLPKELLA 676
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
463-777 |
4.82e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.73 E-value: 4.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 463 DENSELRQYYIEKLEKQKEDYVEQISSLRQDHEDEVRKLRQSHELDLEGIRQAKMVELSAVQDHGNYLDTLRLASSNLQE 542
Cdd:pfam07888 54 NRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 543 LRDGMSDNQERERQLEARERRLADQERRLKMDEETADDEKRRLMELVSTLELQLGRLSKESAEENWQLRQRMSSL----- 617
Cdd:pfam07888 134 LEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVlqlqd 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 618 ---------------EAERKAFEREKEFHREQMQRDEKRVEDLKAlQLAEMERlhhdlQEERNQLTVERQQIELRQQLNE 682
Cdd:pfam07888 214 tittltqklttahrkEAENEALLEELRSLQERLNASERKVEGLGE-ELSSMAA-----QRDRTQAELHQARLQAAQLTLQ 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 683 HGDPDRDRRELEAQLQVAREAIRRADE-ERDRYHKLQREMeQRKRHLLDKEHALNLK-EDELGQATGAYR--LATSRQHL 758
Cdd:pfam07888 288 LADASLALREGRARWAQERETLQQSAEaDKDRIEKLSAEL-QRLEERLQEERMEREKlEVELGREKDCNRvqLSESRREL 366
|
330 340
....*....|....*....|....*
gi 24662907 759 AEQKA------READQLLQAKLKVM 777
Cdd:pfam07888 367 QELKAslrvaqKEKEQLQAEKQELL 391
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
139-320 |
8.43e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 43.23 E-value: 8.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 139 RPATSKPSMSRQsTDTTTDNSQARPKTSTGRRSSA-QSATinmnadplglfgrdtnaTVSGMSTPVSkkrgttadwlglE 217
Cdd:PRK14971 380 KPVFTQPAAAPQ-PSAAAAASPSPSQSSAAAQPSApQSAT-----------------QPAGTPPTVS------------V 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 218 QEPDQRPITPKAQTAKAQPSSESPSKNTADILRLPD---SDENGMEQEAEMAAVPAPSVVTAATQNILMLSNLNLESNhK 294
Cdd:PRK14971 430 DPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSlgpSTLRPIQEKAEQATGNIKEAPTGTQKEIFTEEDLQYYWQ-E 508
|
170 180
....*....|....*....|....*.
gi 24662907 295 FNALQQQEaQLVIAAQMKSQERTLLE 320
Cdd:PRK14971 509 FAGTRPQE-EKALKETMINCRPKLLN 533
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
531-792 |
1.03e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 531 DTLRLASSNLQELRDGMSDNQERE--RQLEARERRLADQERRLKMDEETADDEKRRLMELVSTLELQlgrlsKESAEENW 608
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEEKEEKDlhERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEH-----EERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 609 QLRQRMSSLEAERKAFEREKEFHREQMQRDEKRVEDLK-----ALQLAEMERLHHDLQEERnQLTVERQQIELRQQLNEH 683
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEeerddLLAEAGLDDADAEAVEAR-REELEDRDEELRDRLEEC 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 684 G-DPDRDRRELEAQLQVAREAIRRADEERDRYHKLQREMEQRKRHLLDKEHALNLKEDELGQATGAY--------RLATS 754
Cdd:PRK02224 334 RvAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFgdapvdlgNAEDF 413
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 24662907 755 RQHLAEQK--AREADQLLQAKLKVMAKRaqeIAEKEAQLA 792
Cdd:PRK02224 414 LEELREERdeLREREAELEATLRTARER---VEEAEALLE 450
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
433-790 |
1.05e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 433 EQEIEMIDSSYKKQIKVLEEHLSVVEKRLKDENSELRQYYIEKLEKQKEDYVEqisslRQDHEDEVRKLRQSHElDLEGI 512
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQME-----RDAMADIRRRESQSQE-DLRNQ 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 513 RQAKMVELSAVQDHGNylDTLRLASSNLQELRDGMSDNQERERQLearerrladqeRRLKMDEETADDEKRRLMELVSTL 592
Cdd:pfam15921 147 LQNTVHELEAAKCLKE--DMLEDSNTQIEQLRKMMLSHEGVLQEI-----------RSILVDFEEASGKKIYEHDSMSTM 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 593 ELQ-----LGRLSKESAEENWQLRQRMSSLEAERKAFEREKEFHRE-QMQRDEKRVEDLKALQLAEMERLHHDLQEERNQ 666
Cdd:pfam15921 214 HFRslgsaISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIElLLQQHQDRIEQLISEHEVEITGLTEKASSARSQ 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 667 LTVERQQIEL--RQQLNEHGDPDRDRRELEAQLQVAREAIRRAdeerdryhklqREMEQRKRHLLDKEhaLNLKEDELGQ 744
Cdd:pfam15921 294 ANSIQSQLEIiqEQARNQNSMYMRQLSDLESTVSQLRSELREA-----------KRMYEDKIEELEKQ--LVLANSELTE 360
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 24662907 745 ATgayrlaTSRQHLAEQKAREADQlLQAKLKVMAKRAQEIAEKEAQ 790
Cdd:pfam15921 361 AR------TERDQFSQESGNLDDQ-LQKLLADLHKREKELSLEKEQ 399
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
419-683 |
1.48e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 419 QRLDELVANMK--VNYEQEIEMIdssyKKQIKVLEEHLSVVEKRLKDENS-ELRQYYIEKLEKQKEdyvEQISSLRQDHE 495
Cdd:COG4913 225 EAADALVEHFDdlERAHEALEDA----REQIELLEPIRELAERYAAARERlAELEYLRAALRLWFA---QRRLELLEAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 496 DEVRKLRQSHELDLEGIRQAKmvelsavQDHGNYLDTLR--LASSNLQELRDGMSDNQERERQLEARERRLADQERRLKM 573
Cdd:COG4913 298 EELRAELARLEAELERLEARL-------DALREELDELEaqIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 574 DEETADDEKRRLMELVStlelqlgrlskesaeenwQLRQRMSSLEAERKAFEREKEFHREQMQRDEKRVEDLKalqlAEM 653
Cdd:COG4913 371 LGLPLPASAEEFAALRA------------------EAAALLEALEEELEALEEALAEAEAALRDLRRELRELE----AEI 428
|
250 260 270
....*....|....*....|....*....|
gi 24662907 654 ERLhhdlqeERNQLTVERQQIELRQQLNEH 683
Cdd:COG4913 429 ASL------ERRKSNIPARLLALRDALAEA 452
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
442-802 |
1.57e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 442 SYKKQIKVLEEHLSVVEKRLKD-ENSELRQYYIEKLEKQKEDYVEQISSlRQDHEDEVRKLRQSHELDLEGI--RQAKMV 518
Cdd:TIGR00606 180 SATRYIKALETLRQVRQTQGQKvQEHQMELKYLKQYKEKACEIRDQITS-KEAQLESSREIVKSYENELDPLknRLKEIE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 519 E-LSAVQDHGNYLDTLRLASSNLQELRDGMSdnqererqlEARERRLADQERRLKMDEETADDEKRRLMELVSTLELQLG 597
Cdd:TIGR00606 259 HnLSKIMKLDNEIKALKSRKKQMEKDNSELE---------LKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 598 RLSKESAEenwqLRQRMSSLEAERKAFEREKEFHREQ-MQRDEKRVEDLKALQLAEMERLHHDLQEERNQLTVERqqiel 676
Cdd:TIGR00606 330 KLNKERRL----LNQEKTELLVEQGRLQLQADRHQEHiRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVI----- 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 677 RQQLNEHGDPDRDRRELEAQLQVAREAirrADEERDRYHKLQREMEQRKRHLLDKEHALNLKEDELGQATGAY-RLATSR 755
Cdd:TIGR00606 401 ERQEDEAKTAAQLCADLQSKERLKQEQ---ADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSdRILELD 477
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 24662907 756 QHLaeQKAREADQLLQAKLKVMAKRAQEIAEKEAQLAHERMLVAQDR 802
Cdd:TIGR00606 478 QEL--RKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQ 522
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
639-816 |
1.77e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 639 EKRVEDLKAlQLAEMERLHHDLQEERNQLTVERQQIELRQQLNEHGDpdrDRRELEAQLQVAREAIRRADEERDRYHKLQ 718
Cdd:COG4913 609 RAKLAALEA-ELAELEEELAEAEERLEALEAELDALQERREALQRLA---EYSWDEIDVASAEREIAELEAELERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 719 REMEQRKRHLLDKEHALNLKEDELGQATGAYRLATSRQHLAEQKAREADQLLQAklKVMAKRAQEIAEKEAQLAHERMLV 798
Cdd:COG4913 685 DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA--AEDLARLELRALLEERFAAALGDA 762
|
170
....*....|....*...
gi 24662907 799 AQDRMALvNLKKQISRSR 816
Cdd:COG4913 763 VERELRE-NLEERIDALR 779
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
470-772 |
2.13e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 470 QYYIEKLEKQKEDYVEQISSLRQDHE---DEVRKLRQS---------HELDLEGI----RQAKMVELSAVQDHGNYLDTL 533
Cdd:COG3096 305 QYRLVEMARELEELSARESDLEQDYQaasDHLNLVQTAlrqqekierYQEDLEELterlEEQEEVVEEAAEQLAEAEARL 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 534 RLASSNLQELRDGMSDNQE-------RERQLEARERRLADQERRLKMDEETADDEKRRLMELVSTLELQLG-------RL 599
Cdd:COG3096 385 EAAEEEVDSLKSQLADYQQaldvqqtRAIQYQQAVQALEKARALCGLPDLTPENAEDYLAAFRAKEQQATEevleleqKL 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 600 SKESA-----EENWQLRQRMSSlEAER-KAFEREKEF---HREQMQRDEkRVEDLKAlQLAEMERLHHDLQEERNQLT-- 668
Cdd:COG3096 465 SVADAarrqfEKAYELVCKIAG-EVERsQAWQTARELlrrYRSQQALAQ-RLQQLRA-QLAELEQRLRQQQNAERLLEef 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 669 --------------------VERQQIELRQQLNEHGDpdrDRRELEAQLQVAREAIR----RADEERDRYHKLQREMEQR 724
Cdd:COG3096 542 cqrigqqldaaeeleellaeLEAQLEELEEQAAEAVE---QRSELRQQLEQLRARIKelaaRAPAWLAAQDALERLREQS 618
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 24662907 725 KRHLLDKEHALNLKEDELGQATGAyrlATSRQHLAEQKAR---EADQLLQA 772
Cdd:COG3096 619 GEALADSQEVTAAMQQLLEREREA---TVERDELAARKQAlesQIERLSQP 666
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
554-726 |
2.36e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 554 ERQLEARERRLADQERRL-----KMDEETADDEKRRLMELVSTLELQLGRLSKESAEENWQLRQRMSSLEAERKAFEREK 628
Cdd:COG3206 181 EEQLPELRKELEEAEAALeefrqKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 629 EfhREQMQRDEKRVEDLKAlQLAEMERL----HHDLQEERNQLTVERQQIELRQQlNEHGDPDRDRRELEAQLQVAREAI 704
Cdd:COG3206 261 Q--SPVIQQLRAQLAELEA-ELAELSARytpnHPDVIALRAQIAALRAQLQQEAQ-RILASLEAELEALQAREASLQAQL 336
|
170 180
....*....|....*....|..
gi 24662907 705 RRADEERDRYHKLQREMEQRKR 726
Cdd:COG3206 337 AQLEARLAELPELEAELRRLER 358
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
609-792 |
3.07e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 609 QLRQRMSSLEAERKAFEREKEFHREQMQRDEKRVEDLKAlqlaemERLHHDLQEERNQLTveRQQIELRQQLNEhgdPDR 688
Cdd:COG3206 165 NLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQ------KNGLVDLSEEAKLLL--QQLSELESQLAE---ARA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 689 DRRELEAQLQVAREAIRRADEE-------------RDRYHKLQREMEQRKRHLLDK-------EHALNLKEDELGQATGA 748
Cdd:COG3206 234 ELAEAEARLAALRAQLGSGPDAlpellqspviqqlRAQLAELEAELAELSARYTPNhpdvialRAQIAALRAQLQQEAQR 313
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 24662907 749 YRLATSRQhLAEQKAREADqlLQAKLKVMAKRAQEIAEKEAQLA 792
Cdd:COG3206 314 ILASLEAE-LEALQAREAS--LQAQLAQLEARLAELPELEAELR 354
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
441-802 |
4.26e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 40.96 E-value: 4.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 441 SSYKKQIKVLEEHLSVVEKR---LKDENSELRQYYIEK--LEKQKEDYVEQISSLRQDHEDEVRKLRQSHELDLEGIR-- 513
Cdd:pfam10174 320 SDCKQHIEVLKESLTAKEQRaaiLQTEVDALRLRLEEKesFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINvl 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 514 QAKMVELSAV-QDHGNYLDTLRLASSNLQElrdgmsDNQERERQLEARERRLADQERRLKMDEETADDEKRRLMELVSTL 592
Cdd:pfam10174 400 QKKIENLQEQlRDKDKQLAGLKERVKSLQT------DSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESL 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 593 ElqlgrlskesaEENWQLRQRMSSLEAERKAFERE----KEFHREQMQRDEKRVEDLKALQLA------EMERLHHDLQE 662
Cdd:pfam10174 474 K-----------KENKDLKEKVSALQPELTEKESSlidlKEHASSLASSGLKKDSKLKSLEIAveqkkeECSKLENQLKK 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 663 ERNQLTVERQQIELRQQLnehgdpdrdrRELEAQLQVAREAIRRADEERDRYHKLQREMEQRKrHLLDKEHAlNLKEDEL 742
Cdd:pfam10174 543 AHNAEEAVRTNPEINDRI----------RLLEQEVARYKEESGKAQAEVERLLGILREVENEK-NDKDKKIA-ELESLTL 610
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 743 GQATGAYRLATSRQHLAEQKAREADQLLQAKLkvmaKRAQEIAEKEAQLAHERMLVAQDR 802
Cdd:pfam10174 611 RQMKEQNKKVANIKHGQQEMKKKGAQLLEEAR----RREDNLADNSQQLQLEELMGALEK 666
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
611-791 |
5.96e-03 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 40.32 E-value: 5.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 611 RQRMSSLEAERKAFERE--KEFHREQMQRDEKRVEDLKALQ--LAEMERLHHDLQEERNQltvERQQIELRQQLNEHGDP 686
Cdd:pfam15709 342 RAEMRRLEVERKRREQEeqRRLQQEQLERAEKMREELELEQqrRFEEIRLRKQRLEEERQ---RQEEEERKQRLQLQAAQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 687 DRDRRE--------LEAQLQVAREAIRRADEERDRYHKLQREMEQRKRHLLDkehalnLKEDElgqatgayRLATSRQ-H 757
Cdd:pfam15709 419 ERARQQqeefrrklQELQRKKQQEEAERAEAEKQRQKELEMQLAEEQKRLME------MAEEE--------RLEYQRQkQ 484
|
170 180 190
....*....|....*....|....*....|....
gi 24662907 758 LAEQKAREADQLLQAKLKVMAKRAQEIAEKEAQL 791
Cdd:pfam15709 485 EAEEKARLEAEERRQKEEEAARLALEEAMKQAQE 518
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
605-765 |
6.83e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.20 E-value: 6.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 605 EENWQLRQRMSSLEAERKaferekefhreQMQRDEKRVEDLkalqLAEMERLHHDLQEERNQLTVERQQIELRQQlnehg 684
Cdd:PRK00409 513 EDKEKLNELIASLEELER-----------ELEQKAEEAEAL----LKEAEKLKEELEEKKEKLQEEEDKLLEEAE----- 572
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 685 dpdrdrreleaqlQVAREAIRRADEERDRYHKLQREMeQRKRHLLDKEHALnlkEDELGQATGAYRLATSRQHLAEQKAR 764
Cdd:PRK00409 573 -------------KEAQQAIKEAKKEADEIIKELRQL-QKGGYASVKAHEL---IEARKRLNKANEKKEKKKKKQKEKQE 635
|
.
gi 24662907 765 E 765
Cdd:PRK00409 636 E 636
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
551-703 |
7.02e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.15 E-value: 7.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 551 QERERQLEARERRLADQERRLKMDEETADDEKRrlmelvstlelqlgrlskesaeenwQLRQRMSSLEAERKAFEREKef 630
Cdd:PRK12704 71 NEFEKELRERRNELQKLEKRLLQKEENLDRKLE-------------------------LLEKREEELEKKEKELEQKQ-- 123
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24662907 631 hrEQMQRDEKRVEDLKALQLAEMERLHHDLQEERNQLTVERQQIELRQQLNEHgdpdRDRRELEAQLQVAREA 703
Cdd:PRK12704 124 --QELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVL----IKEIEEEAKEEADKKA 190
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
415-712 |
9.24e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 39.81 E-value: 9.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 415 LLEKQRLDELVANMKVNYEQEIEMIDSSYKKQIKVLEEHLSVVEKRLKDENSELrqyyieklekqkEDYVEQISSLRQDH 494
Cdd:pfam10174 445 LSEKERIIERLKEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSL------------IDLKEHASSLASSG 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 495 EDEVRKLRQsheldLEGIRQAKMVELSAVQDHGNYLDTLRLASSNLQELRDGMSD-NQERERQLEARERRLADQERRLKM 573
Cdd:pfam10174 513 LKKDSKLKS-----LEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRIRLlEQEVARYKEESGKAQAEVERLLGI 587
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 574 DEETaDDEKRRLMELVSTLELQLGRLSKESAEENWQLrqRMSSLEAERKAFEREKEFHREQMQRDEKRVEDLKALQLAEM 653
Cdd:pfam10174 588 LREV-ENEKNDKDKKIAELESLTLRQMKEQNKKVANI--KHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEELMGAL 664
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 24662907 654 ERLHHDLQEERNQLTVERQQIELRQQLNEHGDPDRdRRELEAQLQVAREAIRRADEERD 712
Cdd:pfam10174 665 EKTRQELDATKARLSSTQQSLAEKDGHLTNLRAER-RKQLEEILEMKQEALLAAISEKD 722
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
559-817 |
9.36e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.94 E-value: 9.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 559 ARERRLAdqERRLKMDEE-----TADDEKRRLMELVSTLELQLGR-----LSKESAEENWQLRQRMSSLEAERKAFEREK 628
Cdd:COG3096 782 AREKRLE--ELRAERDELaeqyaKASFDVQKLQRLHQAFSQFVGGhlavaFAPDPEAELAALRQRRSELERELAQHRAQE 859
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 629 EFHREQMQRDEKRVEDLKALQLAEMERLHHDLQEERNQLTVERQQI-ELRQQLNEHGdpdRDRRELEAQLQVARE----- 702
Cdd:COG3096 860 QQLRQQLDQLKEQLQLLNKLLPQANLLADETLADRLEELREELDAAqEAQAFIQQHG---KALAQLEPLVAVLQSdpeqf 936
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 703 -----AIRRADEERDRyhkLQR------EMEQRKRH--------LLDKEHALNLK--------EDELGQATGAYRLATSR 755
Cdd:COG3096 937 eqlqaDYLQAKEQQRR---LKQqifalsEVVQRRPHfsyedavgLLGENSDLNEKlrarleqaEEARREAREQLRQAQAQ 1013
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24662907 756 QHLAEQKAREADQLLQAKLKVMAKRAQEIAEKEAQLAHERMLVAQDRMALVNLKKQISRSRC 817
Cdd:COG3096 1014 YSQYNQVLASLKSSRDAKQQTLQELEQELEELGVQADAEAEERARIRRDELHEELSQNRSRR 1075
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
416-502 |
9.56e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.84 E-value: 9.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662907 416 LEKQRLDELVANMKVNY--EQEIEMIDSSYKKQIKVLEEHLsvveKRLKDENSELRQyYIEKLEKQKEDYVEQISSLRQD 493
Cdd:COG2433 382 LEELIEKELPEEEPEAEreKEHEERELTEEEEEIRRLEEQV----ERLEAEVEELEA-ELEEKDERIERLERELSEARSE 456
|
....*....
gi 24662907 494 HEDEVRKLR 502
Cdd:COG2433 457 ERREIRKDR 465
|
|
| |
