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Conserved domains on  [gi|28574954|ref|NP_648179|]
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uncharacterized protein Dmel_CG13676, isoform A [Drosophila melanogaster]

Protein Classification

chitin binding peritrophin-A domain-containing protein( domain architecture ID 10482828)

chitin binding peritrophin-A domain-containing protein similar to Blomia tropicalis major allergen Blo t 12 and Caenorhabditis elegans chondroitin proteoglycan 1

Gene Ontology:  GO:0008061
PubMed:  33744410|9651363

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 130-182 1.85e-11

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


:

Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 59.73  E-value: 1.85e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 28574954   130 CEGLHDGFYASiEYKCQIYHHCVYGIRHDFLCANFTAFDQRTFICHFASD-VDC 182
Cdd:pfam01607   1 CAGKEDGYYAD-PGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICDYPDNvVDC 53
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 386-728 1.29e-08

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.18  E-value: 1.29e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   386 AAEEQTPQKVKTTPKPLTEFITPkaAAASVYARPRAPPRIARP-VPINEKKKFSYPVQKITATTQAP------------S 452
Cdd:PHA03247 2558 AAPPAAPDRSVPPPRPAPRPSEP--AVTSRARRPDAPPQSARPrAPVDDRGDPRGPAPPSPLPPDTHapdppppspspaA 2635

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   453 NSAQEEEDYPEEQVEEDYEQP-PARNTPRRRT-------PASRAEQKPTRTTLRKPVTDKKPVDEEYDEPAEPEPLRKRK 524
Cdd:PHA03247 2636 NEPDPHPPPTVPPPERPRDDPaPGRVSRPRRArrlgraaQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHAL 2715

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   525 RPLAPRSRVPAADVDFEDEEYEES---PAPVSTAAPLRNQRLRAKTTTRKPTAPPRPRKPIVEDEEELEHPVEAVEDEA- 600
Cdd:PHA03247 2716 VSATPLPPGPAAARQASPALPAAPappAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESr 2795

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   601 ------PAPRSRANSLSGRNAGAGFSQRPSS------VRVVKRPFLPSRGGSPYLPRG--LQPVGVALKPLPTTDSTPID 666
Cdd:PHA03247 2796 eslpspWDPADPPAAVLAPAAALPPAASPAGplppptSAQPTAPPPPPGPPPPSLPLGgsVAPGGDVRRRPPSRSPAAKP 2875

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 28574954   667 MGSTISGVRLLEHGAPLLRGNPDSGEDDE-EDAPPSPSPPRTTLPPRSALPATPKRVEPQRPK 728
Cdd:PHA03247 2876 AAPARPPVRRLARPAVSRSTESFALPPDQpERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPR 2938
 
Name Accession Description Interval E-value
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 130-182 1.85e-11

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 59.73  E-value: 1.85e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 28574954   130 CEGLHDGFYASiEYKCQIYHHCVYGIRHDFLCANFTAFDQRTFICHFASD-VDC 182
Cdd:pfam01607   1 CAGKEDGYYAD-PGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICDYPDNvVDC 53
PHA03247 PHA03247
large tegument protein UL36; Provisional
 386-728 1.29e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.18  E-value: 1.29e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   386 AAEEQTPQKVKTTPKPLTEFITPkaAAASVYARPRAPPRIARP-VPINEKKKFSYPVQKITATTQAP------------S 452
Cdd:PHA03247 2558 AAPPAAPDRSVPPPRPAPRPSEP--AVTSRARRPDAPPQSARPrAPVDDRGDPRGPAPPSPLPPDTHapdppppspspaA 2635

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   453 NSAQEEEDYPEEQVEEDYEQP-PARNTPRRRT-------PASRAEQKPTRTTLRKPVTDKKPVDEEYDEPAEPEPLRKRK 524
Cdd:PHA03247 2636 NEPDPHPPPTVPPPERPRDDPaPGRVSRPRRArrlgraaQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHAL 2715

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   525 RPLAPRSRVPAADVDFEDEEYEES---PAPVSTAAPLRNQRLRAKTTTRKPTAPPRPRKPIVEDEEELEHPVEAVEDEA- 600
Cdd:PHA03247 2716 VSATPLPPGPAAARQASPALPAAPappAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESr 2795

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   601 ------PAPRSRANSLSGRNAGAGFSQRPSS------VRVVKRPFLPSRGGSPYLPRG--LQPVGVALKPLPTTDSTPID 666
Cdd:PHA03247 2796 eslpspWDPADPPAAVLAPAAALPPAASPAGplppptSAQPTAPPPPPGPPPPSLPLGgsVAPGGDVRRRPPSRSPAAKP 2875

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 28574954   667 MGSTISGVRLLEHGAPLLRGNPDSGEDDE-EDAPPSPSPPRTTLPPRSALPATPKRVEPQRPK 728
Cdd:PHA03247 2876 AAPARPPVRRLARPAVSRSTESFALPPDQpERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPR 2938
ChtBD2 smart00494
Chitin-binding domain type 2;
128-174 3.02e-07

Chitin-binding domain type 2;


Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 47.82  E-value: 3.02e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 28574954    128 FKCEGLHDGFYASiEYKCQIYHHCVYGIRHDFLCANFTAFDQRTFIC 174
Cdd:smart00494   1 NECPGRGDGLYPH-PTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTC 46
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 312-604 4.47e-04

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 43.99  E-value: 4.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  312 DERPSKRPRGK-PTAGTAGRKISPRKPGRVEERRSFNEDRPLGRRRSEKERTTpSSALDDLDEYEKPY-------NSADQ 383
Cdd:NF033839 178 DTKPSPQPEGKkPSVPDINQEKEKAKLAVATYMSKILDDIQKHHLQKEKHRQI-VALIKELDELKKQAlseidnvNTKVE 256

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  384 VEAAEEQTPQKVKTTPKPLTEFITPKAAAASVYARPRAPPRIARPVPINEKKKFSYPVQKIT------ATTQAPSNSAQE 457
Cdd:NF033839 257 IENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKpevkpqLEKPKPEVKPQP 336

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  458 EEDYPEEQVEEDYEQPPARNTPRRRTPASRAE-QKPTRTTLRKPVTDKKPVDEEYDEP---AEPEPlRKRKRPLAPRSRV 533
Cdd:NF033839 337 EKPKPEVKPQLETPKPEVKPQPEKPKPEVKPQpEKPKPEVKPQPETPKPEVKPQPEKPkpeVKPQP-EKPKPEVKPQPEK 415

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 28574954  534 PAADVDFEDEEYEESPAPvstAAPLRNQRLRAKTTTRKPTAPPRPRKPIVEDEEELEHPVEAVEDEAPAPR 604
Cdd:NF033839 416 PKPEVKPQPEKPKPEVKP---QPEKPKPEVKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPK 483
Treacle pfam03546
Treacher Collins syndrome protein Treacle;
304-502 4.90e-03

Treacher Collins syndrome protein Treacle;


Pssm-ID: 460967 [Multi-domain]  Cd Length: 531  Bit Score: 40.44  E-value: 4.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   304 EEALDEDYDERPSKRP-RGKPTAGTAGRKISPRKPGRVEERRSFNEDRPLGRRRSEKERTTPSSALDD-------LDEYE 375
Cdd:pfam03546 236 EESSDSEEEAPAAATPaQAKPALKTPQTKASPRKGTPITPTSAKVPPVRVGTPAPWKAGTVTSPACASspavargAQRPE 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   376 KPYNSADQVEAAEEQTPQKVKTTPKPLTEFITPKAAAA-----SVYARPRAPPRIARPVpinekkkfsypVQKITATTQA 450
Cdd:pfam03546 316 EDSSSSEESESEEETAPAAAVGQAKSVGKGLQGKAASAptkgpSGQGTAPVPPGKTGPA-----------VAQVKAEAQE 384

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 28574954   451 PSNSAQEEEDYPEEQVEedyeqpPARNTPRRRTPASRAEQKPTRTTLRKPVT 502
Cdd:pfam03546 385 DSESSEEESDSEEAAAT------PAQVKASGKTPQAKANPAPTKASSAKGAA 430
 
Name Accession Description Interval E-value
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 130-182 1.85e-11

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 59.73  E-value: 1.85e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 28574954   130 CEGLHDGFYASiEYKCQIYHHCVYGIRHDFLCANFTAFDQRTFICHFASD-VDC 182
Cdd:pfam01607   1 CAGKEDGYYAD-PGDCSKYYVCSNGEAVEFTCPNGLVFDPTLGICDYPDNvVDC 53
PHA03247 PHA03247
large tegument protein UL36; Provisional
 386-728 1.29e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.18  E-value: 1.29e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   386 AAEEQTPQKVKTTPKPLTEFITPkaAAASVYARPRAPPRIARP-VPINEKKKFSYPVQKITATTQAP------------S 452
Cdd:PHA03247 2558 AAPPAAPDRSVPPPRPAPRPSEP--AVTSRARRPDAPPQSARPrAPVDDRGDPRGPAPPSPLPPDTHapdppppspspaA 2635

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   453 NSAQEEEDYPEEQVEEDYEQP-PARNTPRRRT-------PASRAEQKPTRTTLRKPVTDKKPVDEEYDEPAEPEPLRKRK 524
Cdd:PHA03247 2636 NEPDPHPPPTVPPPERPRDDPaPGRVSRPRRArrlgraaQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHAL 2715

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   525 RPLAPRSRVPAADVDFEDEEYEES---PAPVSTAAPLRNQRLRAKTTTRKPTAPPRPRKPIVEDEEELEHPVEAVEDEA- 600
Cdd:PHA03247 2716 VSATPLPPGPAAARQASPALPAAPappAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESr 2795

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   601 ------PAPRSRANSLSGRNAGAGFSQRPSS------VRVVKRPFLPSRGGSPYLPRG--LQPVGVALKPLPTTDSTPID 666
Cdd:PHA03247 2796 eslpspWDPADPPAAVLAPAAALPPAASPAGplppptSAQPTAPPPPPGPPPPSLPLGgsVAPGGDVRRRPPSRSPAAKP 2875

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 28574954   667 MGSTISGVRLLEHGAPLLRGNPDSGEDDE-EDAPPSPSPPRTTLPPRSALPATPKRVEPQRPK 728
Cdd:PHA03247 2876 AAPARPPVRRLARPAVSRSTESFALPPDQpERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPR 2938
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
377-627 2.07e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 58.32  E-value: 2.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  377 PYNSADQVEAAEEQTPQKVKTTPKPLTEFITPKAAAASVYARPRAPPRIARPVPINE----KKKFSYPVQKITATTQAPS 452
Cdd:PRK07003 381 PAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADrgddAADGDAPVPAKANARASAD 460

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  453 NSAQEEEDYPEEQVEEDYEQPPARNTPRRRTPASRAEQKPTRTTLRKPVTDKKPVDEEYDEPAEPEPLRKRKRPLAPRSR 532
Cdd:PRK07003 461 SRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAA 540

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  533 VPAADvdfedeeyeespAPVSTAA--PLRNQRLRAKTT-TRKPTAPPRP-RKPIVEDEEELEHPVEAVedeaPAPRSRAN 608
Cdd:PRK07003 541 APAAR------------AGGAAAAldVLRNAGMRVSSDrGARAAAAAKPaAAPAAAPKPAAPRVAVQV----PTPRARAA 604

                        250
                 ....*....|....*....
gi 28574954  609 SLSGRNAGAGFSQRPSSVR 627
Cdd:PRK07003 605 TGDAPPNGAARAEQAAESR 623
ChtBD2 smart00494
Chitin-binding domain type 2;
128-174 3.02e-07

Chitin-binding domain type 2;


Pssm-ID: 214696 [Multi-domain]  Cd Length: 49  Bit Score: 47.82  E-value: 3.02e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 28574954    128 FKCEGLHDGFYASiEYKCQIYHHCVYGIRHDFLCANFTAFDQRTFIC 174
Cdd:smart00494   1 NECPGRGDGLYPH-PTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTC 46
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 302-598 5.34e-07

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 53.71  E-value: 5.34e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   302 DEEEALDEDYDERPSKRPRGKPTAGT-AGRKISPRKPGRVEERRSFNEDRplgrRRSEKERTTPSSALDDLDEYE--KPY 378
Cdd:PLN03237 1166 DKLDKEDAKAEEAREKLQRAAARGESgAAKKVSRQAPKKPAPKKTTKKAS----ESETTEETYGSSAMETENVAEvvKPK 1241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   379 NSADQVEAAeeqtPQKVKTTPKPL-TEFITPKAAAASVYARPRAPPRIARPVP-INEKKKFSYPVQKitATTQAPSNSAQ 456
Cdd:PLN03237 1242 GRAGAKKKA----PAAAKEKEEEDeILDLKDRLAAYNLDSAPAQSAKMEETVKaVPARRAAARKKPL--ASVSVISDSDD 1315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   457 EEEDY-PEEQVEEDYEQ---------------PPArnTPRRRTPASRAEQKPTRTTLRKPVtdkkpvdEEYDEPAEPEPL 520
Cdd:PLN03237 1316 DDDDFaVEVSLAERLKKkggrkpaaankkaakPPA--AAKKRGPATVQSGQKLLTEMLKPA-------EAIGISPEKKVR 1386

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   521 RKRKRPLAPRSRVPAADVDFEDEEYEESPAPVST---------AAPLRNQRLRAKTTTRKPTAPprprkpivEDEEELEH 591
Cdd:PLN03237 1387 KMRASPFNKKSGSVLGRAATNKETESSENVSGSSssekdeidvSAKPRPQRANRKQTTYVLSDS--------ESESADDS 1458


                  ....*..
gi 28574954   592 PVEAVED 598
Cdd:PLN03237 1459 DFDDDED 1465
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 288-721 2.54e-06

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 51.23  E-value: 2.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  288 EAKKPIRRNRNRYRDEEEaldEDYDERpskrprGKPTAGTAGRKISPRKPGRVEErrSFNEDRPLGRRRSEKERTTPSSA 367
Cdd:PTZ00449 484 EIKKLIKKSKKKLAPIEE---EDSDKH------DEPPEGPEASGLPPKAPGDKEG--EEGEHEDSKESDEPKEGGKPGET 552

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  368 LDDlDEYEKPynsadqvEAAEEQTPQKVKTTPKpltefitpkaaaasvyaRPRAPPRIARPVPINEKKKFSYPVQKiTAT 447
Cdd:PTZ00449 553 KEG-EVGKKP-------GPAKEHKPSKIPTLSK-----------------KPEFPKDPKHPKDPEEPKKPKRPRSA-QRP 606

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  448 TQAPSNSAQEEEDYPEEQVEEDYEQPPARN-TPRRRTPASRAEQKPTRTTLRKPVTDKKPVDEEYDEPAEPEPLRKRKRP 526
Cdd:PTZ00449 607 TRPKSPKLPELLDIPKSPKRPESPKSPKRPpPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKS 686

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  527 LAPRSRVpAADVDFEDEEYEESP----APVSTAAPLRNQRLRAKTTTRKPtaPPRPRKPIVEDEEELEHPVEAVE--DEA 600
Cdd:PTZ00449 687 KETKTTV-VLDESFESILKETLPetpgTPFTTPRPLPPKLPRDEEFPFEP--IGDPDAEQPDDIEFFTPPEEERTffHET 763

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  601 PAPRSRANSLSGRNAGAGF-SQRPSSVRVVKRPFLPSR------GGSPYLPR------GLQPVGVALKPLP---TTDST- 663
Cdd:PTZ00449 764 PADTPLPDILAEEFKEEDIhAETGEPDEAMKRPDSPSEhedkppGDHPSLPKkrhrldGLALSTTDLESDAgriAKDASg 843

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28574954  664 -PIDMGST-----ISGVRLLEHGAPLLRG---NPDSGEDDEEDAPPSPSPPRTTL-----------PPRSALPATPKR 721
Cdd:PTZ00449 844 kIVKLKRSksfddLTTVEEAEEMGAEARKivvDDDGTEADDEDTHPPEEKHKSEVrrrrppkkpskPKKPSKPKKPKK 921
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
 352-588 3.08e-05

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 48.12  E-value: 3.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   352 LGRRRSEKE---RTTPSSA-LDDLDEYEKPYNSADQVEAAEEQTPQKVKTTPK---------PLTEFITPKAAAASVYAR 418
Cdd:PTZ00108 1111 LEKKEKELEklkNTTPKDMwLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKgkasklrkpKLKKKEKKKKKSSADKSK 1190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   419 PRAPPRIARPVPINEKKKFSYPVQKITATTQAPSNSAQEEEDYPEEQVEEDYEQPPARNTPRRRTPASRAEQKPTRTTlR 498
Cdd:PTZ00108 1191 KASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKE-G 1269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   499 KPVTDKKPVDEEYDEPAEPEPLRKRKRPLAPRSRVPAADVDFED--------EEYEESPAPVSTAAPLRNQRLRAKTTTR 570
Cdd:PTZ00108 1270 KPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRlegslaalKKKKKSEKKTARKKKSKTRVKQASASQS 1349

                         250
                  ....*....|....*...
gi 28574954   571 KPTAPPRPRKPIVEDEEE 588
Cdd:PTZ00108 1350 SRLLRRPRKKKSDSSSED 1367
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
 304-549 1.77e-04

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 45.42  E-value: 1.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   304 EEALDEDYDERPSKRPRGKPTAGTAGRKISP--RKPGRVEERRSFNEDRPLGRRRSEKERTTPSSALDDLDEYEKPYNSA 381
Cdd:PTZ00108 1138 EEALEEQEEVEEKEIAKEQRLKSKTKGKASKlrKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKK 1217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   382 DQVEAAEEQTPQKVKTTPKPLTEFITPKAAAASVYARPRAPPRIARPVPINEKKKFSYP-VQKITATTQAPSNSAQEEED 460
Cdd:PTZ00108 1218 SNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKrVSAVQYSPPPPSKRPDGESN 1297

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   461 YPEEQVEedyeqPPARNTPRRRTPASRAEQKPTRTTLRKPVTDKKPVDEEYDEPAEPEPLRKRKRPLAPRSRVPAADVDF 540
Cdd:PTZ00108 1298 GGSKPSS-----PTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSE 1372


                  ....*....
gi 28574954   541 EDEEYEESP 549
Cdd:PTZ00108 1373 VDDSEDEDD 1381
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 411-727 4.17e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.39  E-value: 4.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   411 AAASVYARPRAPPRIARPVPINEKKKFSYPVQKITATTQAPSNSAQEEEDYPEEQVEEDYEQPPARNTPRRRTPASRAEQ 490
Cdd:PHA03307   50 LAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPS 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   491 KPTRttLRKPVTDKKPVDEEYDEPAEPEPLRKRKRPLAPRSRVPAADVDFEDEEYEESPAPVSTAAPLRNQRLRAktttr 570
Cdd:PHA03307  130 PAPD--LSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAA----- 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   571 kpTAPPRPRKPIVEDEEELEHPVEAVEDEAPAPRSRANSLSGRNAGAGFSQR-------PSSVRVVKRP----------F 633
Cdd:PHA03307  203 --SPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPEnecplprPAPITLPTRIweasgwngpsS 280

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   634 LPSRGGSPYLPRGLQPVGVALKPLPTTDSTPIDMGSTISGVRLLEHGAPLLRGNPDSGEDDEEDAPPSPSPPRTTLPPRS 713
Cdd:PHA03307  281 RPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPA 360

                         330
                  ....*....|....
gi 28574954   714 ALPATPKRVEPQRP 727
Cdd:PHA03307  361 DPSSPRKRPRPSRA 374
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 235-641 4.19e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 44.31  E-value: 4.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   235 NRRPIDDYYYeDQDQYEDDYyeerpvrrpkprprqrkpqvepEYDDEYDDKRTEAKKP-IRRNRNRYRdeeEALDEDYde 313
Cdd:PRK10263  203 NRTRRDDTWV-DEDEYEDDE----------------------EYEDENHGKQHESRRArILRGALARR---KRLAEKF-- 254

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   314 rpsKRPRGKPT--AGTAGRKISPRKpgRVEERRSFNEDRPLGRRRSEKERTTPssaldDLDEYEKPYNSADQVE----AA 387
Cdd:PRK10263  255 ---INPMGRQTdaALFSGKRMDDDE--EITYTARGVAADPDDVLFSGNRATQP-----EYDEYDPLLNGAPITEpvavAA 324

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   388 EEQTPQKVKTTPkplTEFITPKAAAASVYARPRAP-------PRIARPVPINEKKKFSYPVQKITATTQAPSNSAQEEED 460
Cdd:PRK10263  325 AATTATQSWAAP---VEPVTQTPPVASVDVPPAQPtvawqpvPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPV 401

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   461 YPEEQVEEDYEQPPARNTPRRRTPASRAEQKPTRTTLRKPVTDKKPVDEEYDEPAEPEPLRKRKRP-----------LAP 529
Cdd:PRK10263  402 QPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTyqqpaaqeplyQQP 481

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   530 RSRVPAADVDFEDEEYEESPA--PVSTAAPLRNQRLRAKTT-------TRKPTAPPRPRKPIVE-DEEELEHPVEAVEDE 599
Cdd:PRK10263  482 QPVEQQPVVEPEPVVEETKPArpPLYYFEEVEEKRAREREQlaawyqpIPEPVKEPEPIKSSLKaPSVAAVPPVEAAAAV 561

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 28574954   600 APAPRSRANSLSGRNAGAGfsqrpssvrVVKRPFLPSRGGSP 641
Cdd:PRK10263  562 SPLASGVKKATLATGAAAT---------VAAPVFSLANSGGP 594
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 312-604 4.47e-04

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 43.99  E-value: 4.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  312 DERPSKRPRGK-PTAGTAGRKISPRKPGRVEERRSFNEDRPLGRRRSEKERTTpSSALDDLDEYEKPY-------NSADQ 383
Cdd:NF033839 178 DTKPSPQPEGKkPSVPDINQEKEKAKLAVATYMSKILDDIQKHHLQKEKHRQI-VALIKELDELKKQAlseidnvNTKVE 256

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  384 VEAAEEQTPQKVKTTPKPLTEFITPKAAAASVYARPRAPPRIARPVPINEKKKFSYPVQKIT------ATTQAPSNSAQE 457
Cdd:NF033839 257 IENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKpevkpqLEKPKPEVKPQP 336

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  458 EEDYPEEQVEEDYEQPPARNTPRRRTPASRAE-QKPTRTTLRKPVTDKKPVDEEYDEP---AEPEPlRKRKRPLAPRSRV 533
Cdd:NF033839 337 EKPKPEVKPQLETPKPEVKPQPEKPKPEVKPQpEKPKPEVKPQPETPKPEVKPQPEKPkpeVKPQP-EKPKPEVKPQPEK 415

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 28574954  534 PAADVDFEDEEYEESPAPvstAAPLRNQRLRAKTTTRKPTAPPRPRKPIVEDEEELEHPVEAVEDEAPAPR 604
Cdd:NF033839 416 PKPEVKPQPEKPKPEVKP---QPEKPKPEVKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPK 483
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 340-708 4.78e-04

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 44.08  E-value: 4.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   340 VEERRSFNEDRplgrrrSEKERTTPSSA-LDDLDEYEKPYNSADQVEAAEEQTPQKVKttpkpltefitpkaaAASVYAR 418
Cdd:PLN03237 1132 CADRDKLNIEV------EDLKKTTPKSLwLKDLDALEKELDKLDKEDAKAEEAREKLQ---------------RAAARGE 1190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   419 PRAPPRIARPVPINEKKKfsypvqkitATTQAPSNSAQEEEDYPEEQVEEDYE----QPPARNTPRRRTPASRAEQKPT- 493
Cdd:PLN03237 1191 SGAAKKVSRQAPKKPAPK---------KTTKKASESETTEETYGSSAMETENVaevvKPKGRAGAKKKAPAAAKEKEEEd 1261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   494 -----RTTLRKPVTDKKP---VDEEYDEPAEPEPLR-KRKRPLAPRSRVPAADVDFEDEEYEESPAPVStaapLRNQRLR 564
Cdd:PLN03237 1262 eildlKDRLAAYNLDSAPaqsAKMEETVKAVPARRAaARKKPLASVSVISDSDDDDDDFAVEVSLAERL----KKKGGRK 1337

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   565 AKTTTRKPTAPP-RPRKPIVEDEEELEHPVEAVEDEAPAprsranslsgrnagAGFSQRPSSVRVVKRPFlPSRGGSPyl 643
Cdd:PLN03237 1338 PAAANKKAAKPPaAAKKRGPATVQSGQKLLTEMLKPAEA--------------IGISPEKKVRKMRASPF-NKKSGSV-- 1400

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 28574954   644 prglqpVGVALKPLPTTDSTPIDmgstisgvrllehgapllrgNPDSGEDDEEDAPPSPSPPRTT 708
Cdd:PLN03237 1401 ------LGRAATNKETESSENVS--------------------GSSSSEKDEIDVSAKPRPQRAN 1439
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 403-691 2.70e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 41.62  E-value: 2.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  403 TEFITPKAAAAsvyARPRAPpriARPVPINEKKKFSYPVQKITATTQAPSNSA------QEEEDYPEEQVEEDYEQ---P 473
Cdd:PRK08691 375 TELQSPSAQTA---EKETAA---KKPQPRPEAETAQTPVQTASAAAMPSEGKTagpvsnQENNDVPPWEDAPDEAQtaaG 448

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  474 PARNTPRRRTPASRAEQKPtrttlRKPVTDKKPVDEEYDepaepeplrkrkrplAPRSRVPaadvdfedeeyeeSPAPVS 553
Cdd:PRK08691 449 TAQTSAKSIQTASEAETPP-----ENQVSKNKAADNETD---------------APLSEVP-------------SENPIQ 495

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  554 tAAPlRNQRLRAKTTTRKPTAPPRPRKPIVEDEEELEHPVEAVED--EAPAPRSRANSLSGRNAGAGFSQRPSSvrvvkr 631
Cdd:PRK08691 496 -ATP-NDEAVETETFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPPdwEHAAPADTAGGGADEEAEAGGIGGNNT------ 567

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  632 PFLPsrggSPYLPRGLQPVGVAlkplpttdstpiDMGSTISGVRLLEHGAPLLRGNPDSG 691
Cdd:PRK08691 568 PSAP----PPEFSTENWAAIVR------------HFARKLGAAQMPAQHSAWTEYHPDTG 611
rne PRK10811
ribonuclease E; Reviewed
 294-602 3.05e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 41.56  E-value: 3.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   294 RRNRNRYRDE--EEALDEDYDERPSKRPRGKPTAGTAGRKISPRKPGRVEERRSFNEDRP-----LGRRRSEKERTTPss 366
Cdd:PRK10811  614 RRDRNERRDTrdNRTRREGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQaprreRQRRRNDEKRQAQ-- 691

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   367 alddldEYEKPYNSADQVEAAEEQTPQKVKTTPKPLTEFITPK-----AAAASVYARPRAPPRIARPVPinekkkfsypv 441
Cdd:PRK10811  692 ------QEAKALNVEEQSVQETEQEERVQQVQPRRKQRQLNQKvrieqSVAEEAVAPVVEETVAAEPVV----------- 754

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   442 qkiTATTQAPSNSAQEEEDYPEEQVEEDYEQPPARNT-----PRR--RTPAS-----------RAEQKPTRTTL------ 497
Cdd:PRK10811  755 ---QEVPAPRTELVKVPLPVVAQTAPEQDEENNAENRdnngmPRRsrRSPRHlrvsgqrrrryRDERYPTQSPMpltvac 831

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   498 ------------RKPVT---DKKPVDEEYDEPAEPEPLRKRKRPLAPRSRVPAADVDFEDEEYEEspAPVSTAAPLRNQR 562
Cdd:PRK10811  832 aspemasgkvwiRYPVVrpqDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVE--EPVVVAEPQPEEV 909

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 28574954   563 LRAKTTTRKPTAPPRPRKPIVEDEEELEHPVEAVEDEAPA 602
Cdd:PRK10811  910 VVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPV 949
Treacle pfam03546
Treacher Collins syndrome protein Treacle;
304-502 4.90e-03

Treacher Collins syndrome protein Treacle;


Pssm-ID: 460967 [Multi-domain]  Cd Length: 531  Bit Score: 40.44  E-value: 4.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   304 EEALDEDYDERPSKRP-RGKPTAGTAGRKISPRKPGRVEERRSFNEDRPLGRRRSEKERTTPSSALDD-------LDEYE 375
Cdd:pfam03546 236 EESSDSEEEAPAAATPaQAKPALKTPQTKASPRKGTPITPTSAKVPPVRVGTPAPWKAGTVTSPACASspavargAQRPE 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954   376 KPYNSADQVEAAEEQTPQKVKTTPKPLTEFITPKAAAA-----SVYARPRAPPRIARPVpinekkkfsypVQKITATTQA 450
Cdd:pfam03546 316 EDSSSSEESESEEETAPAAAVGQAKSVGKGLQGKAASAptkgpSGQGTAPVPPGKTGPA-----------VAQVKAEAQE 384

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 28574954   451 PSNSAQEEEDYPEEQVEedyeqpPARNTPRRRTPASRAEQKPTRTTLRKPVT 502
Cdd:pfam03546 385 DSESSEEESDSEEAAAT------PAQVKASGKTPQAKANPAPTKASSAKGAA 430
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 315-551 9.50e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 39.52  E-value: 9.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  315 PSKRPRGKPTAGTAGRKISPRKPGRVEERRSFNEDRPLGRRRSEKERTTPSSALDDLDEYEKPY-----------NSADQ 383
Cdd:PLN03209 324 PSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIptppssspassKSVDA 403

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  384 VEAAEEQTPQKVKTTPK--PLTEFITPKAAAA---SVYAR------PRAP-PRIARPVPINEKKKFSYPVQKITATTQAP 451
Cdd:PLN03209 404 VAKPAEPDVVPSPGSASnvPEVEPAQVEAKKTrplSPYARyedlkpPTSPsPTAPTGVSPSVSSTSSVPAVPDTAPATAA 483

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574954  452 SNSAQEEEDYP---EEQVEEDYEQPPARNTPRRRTPASRAEQKPTRTTLRKPVTDKKPVDEeyDEPAEPEPlrkrkRPLA 528
Cdd:PLN03209 484 TDAAAPPPANMrplSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADE--QHHAQPKP-----RPLS 556

                        250       260
                 ....*....|....*....|...
gi 28574954  529 PRSRvpaadvdFEDEEYEESPAP 551
Cdd:PLN03209 557 PYTM-------YEDLKPPTSPTP 572
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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