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Conserved domains on  [gi|20130195|ref|NP_611541|]
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mitochondrial ribosomal protein L54 [Drosophila melanogaster]

Protein Classification

mitochondrion-specific ribosomal mL54 family protein( domain architecture ID 10554111)

mitochondrion-specific ribosomal mL54 family protein is a component of the mitochondrial ribosome (mitoribosome), a dedicated translation machinery responsible for the synthesis of mitochondrial genome-encoded proteins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L37 pfam08561
Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ...
 66-93 6.43e-10

Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ribosomal protein.


:

Pssm-ID: 430074  Cd Length: 88  Bit Score: 51.96  E-value: 6.43e-10
                          10        20
                  ....*....|....*....|....*...
gi 20130195    66 VCGSNYMKTGEDIKIKPDSEYPDWLWTL 93
Cdd:pfam08561  12 LKGLNILKNGPDPVALEDSEYPDWLWTL 39
 
Name Accession Description Interval E-value
Ribosomal_L37 pfam08561
Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ...
 66-93 6.43e-10

Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ribosomal protein.


Pssm-ID: 430074  Cd Length: 88  Bit Score: 51.96  E-value: 6.43e-10
                          10        20
                  ....*....|....*....|....*...
gi 20130195    66 VCGSNYMKTGEDIKIKPDSEYPDWLWTL 93
Cdd:pfam08561  12 LKGLNILKNGPDPVALEDSEYPDWLWTL 39
 
Name Accession Description Interval E-value
Ribosomal_L37 pfam08561
Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ...
 66-93 6.43e-10

Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ribosomal protein.


Pssm-ID: 430074  Cd Length: 88  Bit Score: 51.96  E-value: 6.43e-10
                          10        20
                  ....*....|....*....|....*...
gi 20130195    66 VCGSNYMKTGEDIKIKPDSEYPDWLWTL 93
Cdd:pfam08561  12 LKGLNILKNGPDPVALEDSEYPDWLWTL 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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