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Conserved domains on  [gi|20129953|ref|NP_610878|]
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mars, isoform A [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GKAP super family cl24154
Guanylate-kinase-associated protein (GKAP) protein;
580-694 3.45e-09

Guanylate-kinase-associated protein (GKAP) protein;


The actual alignment was detected with superfamily member pfam03359:

Pssm-ID: 460897  Cd Length: 341  Bit Score: 59.36  E-value: 3.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   580 LENEITRLQALCAEWEAYSKENEarLQETGgIDMINVTIGQTRLLTTKKMMQFSGLidrCEagatgKNSQPNdgsedSKP 659
Cdd:pfam03359 161 LQAETERMEGWCQQMEREAEEND--LPEEI-LGKIRSAVGSAQLLMSQKFQQFRGL---CE-----QNLNPN-----ANP 224

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 20129953   660 V-QAEDLEGWWDMLRLQSENVDKRFDNLKRWKANDW 694
Cdd:pfam03359 225 RpTSQDLAGFWDLLQLSIEDISMKFDELHQLKANNW 260
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 131-342 3.63e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 3.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   131 PTVKQSKALPKSQTFRVPDNLASAKQKEAAPMFQPPKRCSLYMIANPTGKGKAAEPIKPSIPKPTSAAAPPSSNTVAASS 210
Cdd:PHA03247 2769 PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP 2848

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   211 ALARHKSAASATKIV---PAIRQNNNPVALARQKAAARPIPNTTKQTTSVRQPGIEAKKITTTIPRPTPATVTKAKTPGI 287
Cdd:PHA03247 2849 SLPLGGSVAPGGDVRrrpPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 20129953   288 RQQPPVVSTKPRLPEPPAPRTARLPNVLSKPFEKPLGNKAP----VTRRaNVVKPQPIR 342
Cdd:PHA03247 2929 PQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPgrvaVPRF-RVPQPAPSR 2986
 
Name Accession Description Interval E-value
GKAP pfam03359
Guanylate-kinase-associated protein (GKAP) protein;
580-694 3.45e-09

Guanylate-kinase-associated protein (GKAP) protein;


Pssm-ID: 460897  Cd Length: 341  Bit Score: 59.36  E-value: 3.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   580 LENEITRLQALCAEWEAYSKENEarLQETGgIDMINVTIGQTRLLTTKKMMQFSGLidrCEagatgKNSQPNdgsedSKP 659
Cdd:pfam03359 161 LQAETERMEGWCQQMEREAEEND--LPEEI-LGKIRSAVGSAQLLMSQKFQQFRGL---CE-----QNLNPN-----ANP 224

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 20129953   660 V-QAEDLEGWWDMLRLQSENVDKRFDNLKRWKANDW 694
Cdd:pfam03359 225 RpTSQDLAGFWDLLQLSIEDISMKFDELHQLKANNW 260
PHA03247 PHA03247
large tegument protein UL36; Provisional
 131-342 3.63e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 3.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   131 PTVKQSKALPKSQTFRVPDNLASAKQKEAAPMFQPPKRCSLYMIANPTGKGKAAEPIKPSIPKPTSAAAPPSSNTVAASS 210
Cdd:PHA03247 2769 PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP 2848

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   211 ALARHKSAASATKIV---PAIRQNNNPVALARQKAAARPIPNTTKQTTSVRQPGIEAKKITTTIPRPTPATVTKAKTPGI 287
Cdd:PHA03247 2849 SLPLGGSVAPGGDVRrrpPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 20129953   288 RQQPPVVSTKPRLPEPPAPRTARLPNVLSKPFEKPLGNKAP----VTRRaNVVKPQPIR 342
Cdd:PHA03247 2929 PQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPgrvaVPRF-RVPQPAPSR 2986
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 130-330 9.16e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 43.02  E-value: 9.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   130 VPTVKQSKALPKSQTFRVPDNLASAKQKEAAPMFQPPKRCSLYMIANPTGKGKAAEPIKPSIPKPTSAAAppsSNTVAAS 209
Cdd:pfam17823 149 ACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATA---TGHPAAG 225

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   210 SALARHKSAASATKIVPAIRQNNNPVALARQKAAARPIpNTTKQTTSVRQPGIE----AKKITTTIPRPTPATVTKAKTP 285
Cdd:pfam17823 226 TALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTV-ASAAGTINMGDPHARrlspAKHMPSDTMARNPAAPMGAQAQ 304

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 20129953   286 GIRQQ----PPVVSTKPRlPEPPAPRTARLPNVlskPFEKPLGNKAPVT 330
Cdd:pfam17823 305 GPIIQvstdQPVHNTAGE-PTPSPSNTTLEPNT---PKSVASTNLAVVT 349
half-pint TIGR01645
poly-U binding splicing factor, half-pint family; The proteins represented by this model ...
 181-376 1.06e-03

poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.


Pssm-ID: 130706 [Multi-domain]  Cd Length: 612  Bit Score: 42.75  E-value: 1.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   181 GKAAEPIKPsIPKPTSAAAPPSSNTVAASSALARHKSA-ASATKIVPAIRQNNNPVAlarqkAAARPipnTTKQTTSVRQ 259
Cdd:TIGR01645 279 GKCVTPPDA-LLQPATVSAIPAAAAVAAAAATAKIMAAeAVAGAAVLGPRAQSPATP-----SSSLP---TDIGNKAVVS 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   260 PGIEAKKITTTIPRPTPATVTKAKTPGIRQQPPVVSTKPRLPEPP---APrTARLPNVLSKPFEKPLGNKAPVT---RRA 333
Cdd:TIGR01645 350 SAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPglvAP-TEINPSFLASPRKKMKREKLPVTfgaLDD 428

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 20129953   334 NVVKPQPIRGGGGAAAKFKDTAGATSKAASHSIRMKATKIKSQ 376
Cdd:TIGR01645 429 TLAWKEPSKEDQTSEDGKMLAIMGEAAAALALEPKKKKKEKEG 471
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 187-394 1.46e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.39  E-value: 1.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   187 IKPSIPKPTSAAAPPssNTVAASSALARHKSAASATKIVPAIRQNNNpvalARQKAAarpipnTTKQTTSVRQPGIEAKK 266
Cdd:NF033875   55 VQPDNPDPQSGSETP--KTAVSEEATVQKDTTSQPTKVEEVASEKNG----AEQSSA------TPNDTTNAQQPTVGAEK 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   267 ITTTIPRPTPATVTKAktpgiRQQPPVVStkprlpepPAPRTARLPNVLSKPFEKPLGNKA--PVTRRANV-VKPQPIRG 343
Cdd:NF033875  123 SAQEQPVVSPETTNEP-----LGQPTEVA--------PAENEANKSTSIPKEFETPDVDKAvdEAKKDPNItVVEKPAED 189

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 20129953   344 GGGAAAkfKDTAgATSKAASHSIRMKATKIKSQYTRLQDNVRKLPQLKAEL 394
Cdd:NF033875  190 LGNVSS--KDLA-AKEKEVDQLQKEQAKKIAQQAAELKAKNEKIAKENAEI 237
 
Name Accession Description Interval E-value
GKAP pfam03359
Guanylate-kinase-associated protein (GKAP) protein;
580-694 3.45e-09

Guanylate-kinase-associated protein (GKAP) protein;


Pssm-ID: 460897  Cd Length: 341  Bit Score: 59.36  E-value: 3.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   580 LENEITRLQALCAEWEAYSKENEarLQETGgIDMINVTIGQTRLLTTKKMMQFSGLidrCEagatgKNSQPNdgsedSKP 659
Cdd:pfam03359 161 LQAETERMEGWCQQMEREAEEND--LPEEI-LGKIRSAVGSAQLLMSQKFQQFRGL---CE-----QNLNPN-----ANP 224

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 20129953   660 V-QAEDLEGWWDMLRLQSENVDKRFDNLKRWKANDW 694
Cdd:pfam03359 225 RpTSQDLAGFWDLLQLSIEDISMKFDELHQLKANNW 260
PHA03247 PHA03247
large tegument protein UL36; Provisional
 131-342 3.63e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 3.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   131 PTVKQSKALPKSQTFRVPDNLASAKQKEAAPMFQPPKRCSLYMIANPTGKGKAAEPIKPSIPKPTSAAAPPSSNTVAASS 210
Cdd:PHA03247 2769 PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP 2848

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   211 ALARHKSAASATKIV---PAIRQNNNPVALARQKAAARPIPNTTKQTTSVRQPGIEAKKITTTIPRPTPATVTKAKTPGI 287
Cdd:PHA03247 2849 SLPLGGSVAPGGDVRrrpPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 20129953   288 RQQPPVVSTKPRLPEPPAPRTARLPNVLSKPFEKPLGNKAP----VTRRaNVVKPQPIR 342
Cdd:PHA03247 2929 PQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPgrvaVPRF-RVPQPAPSR 2986
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
171-309 1.22e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.02  E-value: 1.22e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953  171 LYMIA-NPTGKGKAAEPIKPSIPkPTSAAAPPSSNTVAASSALARHKSAASATKIVPAIRQnnnpvALARQKAAARPIPN 249
Cdd:PRK12323 358 LRMLAfRPGQSGGGAGPATAAAA-PVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAAR-----AVAAAPARRSPAPE 431

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953  250 TTKQTTSVRQPGIEAKKITTTIPRPTPATVTKAKTPGIRQQPPVVSTKPRLPEPPAPRTA 309
Cdd:PRK12323 432 ALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAP 491
PHA03247 PHA03247
large tegument protein UL36; Provisional
 138-349 7.40e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 7.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   138 ALPKSQTFRVPDNLASAKQKEAAPMFQPPKRCSLymiaNPTGKGKAAEPIKPSIPKPTSAAAPPSSNTVAASSALARHKS 217
Cdd:PHA03247 2591 APPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAP----DPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRR 2666

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   218 AASATKIV-----------PAIRQNNNPVA-LARQKAAARP--------IPNTTKQTTSVRQPGIEAKKITTTIPRPTPA 277
Cdd:PHA03247 2667 ARRLGRAAqassppqrprrRAARPTVGSLTsLADPPPPPPTpepaphalVSATPLPPGPAAARQASPALPAAPAPPAVPA 2746

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 20129953   278 TVTKAKTPGIRQQPPVVSTKPRlPEPPAPRTARLPNVLSKPFEKPLGNKAPVTRRANVVKPQPIRGGGGAAA 349
Cdd:PHA03247 2747 GPATPGGPARPARPPTTAGPPA-PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAA 2817
PHA03247 PHA03247
large tegument protein UL36; Provisional
 131-347 8.61e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.39  E-value: 8.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   131 PTVKQSKALPKSQTFRVPDNLASAKQKEAAPMFQPPKRCSLYMIANPTGKGKAAEPIKPSIP-KPTSAAAPPSSNTVAAS 209
Cdd:PHA03247 2705 PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPpAPAPPAAPAAGPPRRLT 2784

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   210 SALArhKSAASATKIVPAIRQNNNPVALARQKAAAR----------PIPNTTKQTTSVRQPGIEAKKITT---------- 269
Cdd:PHA03247 2785 RPAV--ASLSESRESLPSPWDPADPPAAVLAPAAALppaaspagplPPPTSAQPTAPPPPPGPPPPSLPLggsvapggdv 2862

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   270 ---TIPRPTPATVTKAKTPGIRQ--QPPVV-STKP------RLPEPPAPRTARLPNVLSKPFEKPLGNKAPVTRRANVVK 337
Cdd:PHA03247 2863 rrrPPSRSPAAKPAAPARPPVRRlaRPAVSrSTESfalppdQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP 2942

                         250
                  ....*....|
gi 20129953   338 PQPIRGGGGA 347
Cdd:PHA03247 2943 LAPTTDPAGA 2952
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 130-330 9.16e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 43.02  E-value: 9.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   130 VPTVKQSKALPKSQTFRVPDNLASAKQKEAAPMFQPPKRCSLYMIANPTGKGKAAEPIKPSIPKPTSAAAppsSNTVAAS 209
Cdd:pfam17823 149 ACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATA---TGHPAAG 225

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   210 SALARHKSAASATKIVPAIRQNNNPVALARQKAAARPIpNTTKQTTSVRQPGIE----AKKITTTIPRPTPATVTKAKTP 285
Cdd:pfam17823 226 TALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTV-ASAAGTINMGDPHARrlspAKHMPSDTMARNPAAPMGAQAQ 304

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 20129953   286 GIRQQ----PPVVSTKPRlPEPPAPRTARLPNVlskPFEKPLGNKAPVT 330
Cdd:pfam17823 305 GPIIQvstdQPVHNTAGE-PTPSPSNTTLEPNT---PKSVASTNLAVVT 349
half-pint TIGR01645
poly-U binding splicing factor, half-pint family; The proteins represented by this model ...
 181-376 1.06e-03

poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.


Pssm-ID: 130706 [Multi-domain]  Cd Length: 612  Bit Score: 42.75  E-value: 1.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   181 GKAAEPIKPsIPKPTSAAAPPSSNTVAASSALARHKSA-ASATKIVPAIRQNNNPVAlarqkAAARPipnTTKQTTSVRQ 259
Cdd:TIGR01645 279 GKCVTPPDA-LLQPATVSAIPAAAAVAAAAATAKIMAAeAVAGAAVLGPRAQSPATP-----SSSLP---TDIGNKAVVS 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   260 PGIEAKKITTTIPRPTPATVTKAKTPGIRQQPPVVSTKPRLPEPP---APrTARLPNVLSKPFEKPLGNKAPVT---RRA 333
Cdd:TIGR01645 350 SAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPglvAP-TEINPSFLASPRKKMKREKLPVTfgaLDD 428

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 20129953   334 NVVKPQPIRGGGGAAAKFKDTAGATSKAASHSIRMKATKIKSQ 376
Cdd:TIGR01645 429 TLAWKEPSKEDQTSEDGKMLAIMGEAAAALALEPKKKKKEKEG 471
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 130-406 1.16e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 42.98  E-value: 1.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   130 VPTVkqSKALPKSQTFRVPDNLASAKQKEAAPMFQppkrcslymIANPTGKGKAAEPIKPSIPK-PTSAAAPPSSNTVAA 208
Cdd:pfam05109 571 IPTL--GKTSPTSAVTTPTPNATSPTVGETSPQAN---------TTNHTLGGTSSTPVVTSPPKnATSAVTTGQHNITSS 639

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   209 SSALARHKSAASATKIVPAIRQNNN---PVALARQKAAARPIPNTTKQTTSVRQpgieakkITTTIPRPTPATVTKAKTP 285
Cdd:pfam05109 640 STSSMSLRPSSISETLSPSTSDNSTshmPLLTSAHPTGGENITQVTPASTSTHH-------VSTSSPAPRPGTTSQASGP 712

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   286 GIRQqppvVSTKP---RLPEPPAPRTARLPnvlskpfEKPLGNKAPVtrranvvkPQPIRGGGGAAAKF--KDTAGATSK 360
Cdd:pfam05109 713 GNSS----TSTKPgevNVTKGTPPKNATSP-------QAPSGQKTAV--------PTVTSTGGKANSTTggKHTTGHGAR 773

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 20129953   361 AASHSIRMKATKIKSQYTRLQDNVRKLPQLKAELLHAATLDIPPLT 406
Cdd:pfam05109 774 TSTEPTTDYGGDSTTPRTRYNATTYLPPSTSSKLRPRWTFTSPPVT 819
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
148-349 1.18e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.91  E-value: 1.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953  148 PDNLASAKQKEAAPMFQPPKRCSLYMIANPTGKGKAAEPIKPSIPKPTSAAAP--PSSNTVAASSALARHKSAASATKIV 225
Cdd:PRK07003 368 PGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAAtrAEAPPAAPAPPATADRGDDAADGDA 447

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953  226 PAIRQNNNPVALARQKAAARPIPNTTKQTTSVrqPGIEAKKITTTIPRPTPATVTKAKTPGIRQ-QPPVVSTKPRLPEPP 304
Cdd:PRK07003 448 PVPAKANARASADSRCDERDAQPPADSGSASA--PASDAPPDAAFEPAPRAAAPSAATPAAVPDaRAPAAASREDAPAAA 525

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 20129953  305 APRTARLPnvlskpfekplgNKAPVTRRAnvvkpqPIRGGGGAAA 349
Cdd:PRK07003 526 APPAPEAR------------PPTPAAAAP------AARAGGAAAA 552
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 187-394 1.46e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.39  E-value: 1.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   187 IKPSIPKPTSAAAPPssNTVAASSALARHKSAASATKIVPAIRQNNNpvalARQKAAarpipnTTKQTTSVRQPGIEAKK 266
Cdd:NF033875   55 VQPDNPDPQSGSETP--KTAVSEEATVQKDTTSQPTKVEEVASEKNG----AEQSSA------TPNDTTNAQQPTVGAEK 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   267 ITTTIPRPTPATVTKAktpgiRQQPPVVStkprlpepPAPRTARLPNVLSKPFEKPLGNKA--PVTRRANV-VKPQPIRG 343
Cdd:NF033875  123 SAQEQPVVSPETTNEP-----LGQPTEVA--------PAENEANKSTSIPKEFETPDVDKAvdEAKKDPNItVVEKPAED 189

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 20129953   344 GGGAAAkfKDTAgATSKAASHSIRMKATKIKSQYTRLQDNVRKLPQLKAEL 394
Cdd:NF033875  190 LGNVSS--KDLA-AKEKEVDQLQKEQAKKIAQQAAELKAKNEKIAKENAEI 237
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 67-222 1.60e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 42.38  E-value: 1.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953    67 QENVAPKLESPERLDTKPAEllkESNPKVSRQKLY--LQRYMEWKIAKTKEHKQQDQKRRGAAINVPTVKQSK-ALPKSQ 143
Cdd:PRK10263  431 QPYYAPAPEQPVAGNAWQAE---EQQSTFAPQSTYqtEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKpARPPLY 507

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 20129953   144 TFRVPDNLASAKQKEAAPMFQPpkrcslymIANPTgkgKAAEPIKPSIPKPTSAAAPPSSNTVAASSALARHKSAASAT 222
Cdd:PRK10263  508 YFEEVEEKRAREREQLAAWYQP--------IPEPV---KEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLAT 575
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
183-340 2.55e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 2.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953  183 AAEPIKPSIPKPTSAAAPPSSNTVAASSALARHKSAASAtkiVPAIRQNNNPVALARQKAAARPIPNTTKQT-TSVRQPG 261
Cdd:PRK12323 394 AAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA---LAAARQASARGPGGAPAPAPAPAAAPAAAArPAAAGPR 470

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953  262 IEAKKITTTIPRPTPATVTKAKTPGIrqqPPVVSTKPRLPEP-PAPRTARLPNVLSKPFEKPLGNKAPVTRRANVVKPQP 340
Cdd:PRK12323 471 PVAAAAAAAPARAAPAAAPAPADDDP---PPWEELPPEFASPaPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAA 547
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
125-363 3.68e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.99  E-value: 3.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953  125 GAAINVPTVKQSKALPKSQTFRVPDNLASAKQKEAAPMFQPPKRcslymiANPtgkgKAAEPIKPSIPK-PTSAAAPPSS 203
Cdd:PRK07003 366 GAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAA------LAP----KAAAAAAATRAEaPPAAPAPPAT 435

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953  204 NTVAASSAL--ARHKSAASATKIVPAIRQNNNPVALARQKAAARPIPNTTKQTTSVRQPGIEAKKITTTIPRPTPATVTK 281
Cdd:PRK07003 436 ADRGDDAADgdAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAA 515

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953  282 AKTPGIRQQPPVVSTKPRLPEPPAPRTA-------------------------RLPNVLSKPFEKPLGNKAPVTRRANVV 336
Cdd:PRK07003 516 ASREDAPAAAAPPAPEARPPTPAAAAPAaraggaaaaldvlrnagmrvssdrgARAAAAAKPAAAPAAAPKPAAPRVAVQ 595

                        250       260
                 ....*....|....*....|....*..
gi 20129953  337 KPQPirgGGGAAAKFKDTAGATSKAAS 363
Cdd:PRK07003 596 VPTP---RARAATGDAPPNGAARAEQA 619
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 171-312 4.24e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.85  E-value: 4.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953  171 LYMIA-NPTGKGKAAEPIKPSIPKPTSAAAPPSSNTVAASSALARHKSAASATKIVPAIRQNNNPVALARQkAAARPIPN 249
Cdd:PRK14951 359 LRLLAfKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP-AAAAPAAA 437

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 20129953  250 TTKQTTSVRQPgieakkitttiPRPTPATVTKAKTPGIRQQPPVVSTKPRLPEPPAPRTARLP 312
Cdd:PRK14951 438 PAAAPAAVALA-----------PAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLT 489
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
148-329 4.44e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.63  E-value: 4.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953  148 PDNLASAKQKEAAPMFQPPKRCSlymIANPTGKGKAAEPIKPSIPKPTSAAAPPSSNTVAASSALARHKSA--------- 218
Cdd:PRK12323 374 PATAAAAPVAQPAPAAAAPAAAA---PAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASArgpggapap 450

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953  219 ASATKIVPAIRQNNnPVALARQKAAARPIPNTTKQTTSVRQPGIEAKKITTTIPRPTPATVTKAKTPGIRQQPPVVSTKP 298
Cdd:PRK12323 451 APAPAAAPAAAARP-AAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDP 529

                        170       180       190
                 ....*....|....*....|....*....|.
gi 20129953  299 RLPEPPAPRTARLPNVLSKPFEKPLGNKAPV 329
Cdd:PRK12323 530 ATADPDDAFETLAPAPAAAPAPRAAAATEPV 560
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
188-312 5.71e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 40.36  E-value: 5.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953  188 KPSIPKPTSAAAPPSSNTVAASSALARHKSAASATKIVPAIRQnnnPVALARQKAAARPIPNTTKQTTSVRQPGIEAKki 267
Cdd:PRK12727  74 QAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQ---PVSVPRQAPAAAPVRAASIPSPAAQALAHAAA-- 148

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 20129953  268 TTTIPRPTPATVTKAKTpGIRQQPPVVST-KPRLPEPPAPRTARLP 312
Cdd:PRK12727 149 VRTAPRQEHALSAVPEQ-LFADFLTTAPVpRAPVQAPVVAAPAPVP 193
PHA03247 PHA03247
large tegument protein UL36; Provisional
 150-340 5.75e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 5.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   150 NLASAKQKEAAPMFQPPKRCSlymiANPTGKGKAAEpiKPSIPKPTSAAAPPSSNTVAASSALARHKSAASATKIVPAir 229
Cdd:PHA03247 2697 SLADPPPPPPTPEPAPHALVS----ATPLPPGPAAA--RQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA-- 2768

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953   230 qnnnpvalarqkAAARPIPNTTKQTTSVRQPGIEAKKITTTIPRPT-PATVTKAKTPGIRQQPPVVSTKPRLPEPPAPRT 308
Cdd:PHA03247 2769 ------------PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWdPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP 2836

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 20129953   309 ARlPNVLSKPFEKPL---GNKAP---VTRRANVVKPQP 340
Cdd:PHA03247 2837 TA-PPPPPGPPPPSLplgGSVAPggdVRRRPPSRSPAA 2873
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
171-349 6.68e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.22  E-value: 6.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953  171 LYMIA---NPTGKGKAAEPIKPSIPKPTSAAAPPSSNTVAASSALArhKSAASATKIVPAIRQNNNPVALARQKA-AARP 246
Cdd:PRK07003 353 LRMLAfepAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPA--VTAVTGAAGAALAPKAAAAAAATRAEApPAAP 430

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129953  247 IPNTTK---QTTSVRQPGIEAKKITTTIPRPTPATVTKAKTPGIRQQ----PPVVSTKPRLPEPPA----------PRTA 309
Cdd:PRK07003 431 APPATAdrgDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSAsapaSDAPPDAAFEPAPRAaapsaatpaaVPDA 510

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 20129953  310 RLPNVLSKPFE-KPLGNKAPVTRRANVVKPQPIRGGGGAAA 349
Cdd:PRK07003 511 RAPAAASREDApAAAAPPAPEARPPTPAAAAPAARAGGAAA 551
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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