NCBI Conserved Domain Search

Conserved domains on [gi|20129243|ref|NP_608909|]

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NADH dehydrogenase (ubiquinone) 13 kDa A subunit, isoform A [Drosophila melanogaster]

Protein Classification

zinc-finger domain-containing protein( domain architecture ID 10563207)

zinc-finger domain-containing protein similar to NADH:ubiquinone oxidoreductase subunit S6 (NDUFS6), an accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to not be involved in catalysis; it harbors a Zn-binding site and is essential for biogenesis of mitochondrial complex I

Graphical summary

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List of domain hits

Name

Accession

Description

Interval

E-value

zf-CHCC

pfam10276

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is ...

83-118

2.50e-19

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.

Pssm-ID: 463041 Cd Length: 37 Bit Score: 74.49 E-value: 2.50e-19

                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 20129243    83 RVVFCDGGDGPLGHPKVYINLDKPGNHICGYCGLRF 118
Cdd:pfam10276   2 RRVACDGGGGALGHPRVYINLDKPGPVECPYCGLRF 37

Name

Accession

Description

Interval

E-value

zf-CHCC

pfam10276

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is ...

83-118

2.50e-19

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.

Pssm-ID: 463041 Cd Length: 37 Bit Score: 74.49 E-value: 2.50e-19

                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 20129243    83 RVVFCDGGDGPLGHPKVYINLDKPGNHICGYCGLRF 118
Cdd:pfam10276   2 RRVACDGGGGALGHPRVYINLDKPGPVECPYCGLRF 37

COG4391

Uncharacterized protein, contains Zn-finger domain [Function unknown];

75-126

1.17e-13

Uncharacterized protein, contains Zn-finger domain [Function unknown];

Pssm-ID: 443517 Cd Length: 54 Bit Score: 60.65 E-value: 1.17e-13

                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 20129243  75 VPPKECTERVVFCDGGDGPLGHPKVYINLDKPGNHICGYCGLRFVKKDDHHH 126
Cdd:COG4391   3 PETIEVTAKDVSCPGPEGWLGHPRVFLDIGETGEVECPYCGTLYVLKDGLKA 54

Name

Accession

Description

Interval

E-value

zf-CHCC

pfam10276

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is ...

83-118

2.50e-19

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.

Pssm-ID: 463041 Cd Length: 37 Bit Score: 74.49 E-value: 2.50e-19

                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 20129243    83 RVVFCDGGDGPLGHPKVYINLDKPGNHICGYCGLRF 118
Cdd:pfam10276   2 RRVACDGGGGALGHPRVYINLDKPGPVECPYCGLRF 37

COG4391

Uncharacterized protein, contains Zn-finger domain [Function unknown];

75-126

1.17e-13

Uncharacterized protein, contains Zn-finger domain [Function unknown];

Pssm-ID: 443517 Cd Length: 54 Bit Score: 60.65 E-value: 1.17e-13

                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 20129243  75 VPPKECTERVVFCDGGDGPLGHPKVYINLDKPGNHICGYCGLRFVKKDDHHH 126
Cdd:COG4391   3 PETIEVTAKDVSCPGPEGWLGHPRVFLDIGETGEVECPYCGTLYVLKDGLKA 54

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01