|
Name |
Accession |
Description |
Interval |
E-value |
| TMTC_DUF1736 |
pfam08409 |
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ... |
270-343 |
2.61e-30 |
|
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.
Pssm-ID: 462468 Cd Length: 75 Bit Score: 114.16 E-value: 2.61e-30
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19920486 270 GPQTAFSSADNPIARTPSAWTRLLTFLYLPVFNLRLLLQPNVLSFDWGMDALPRVTSLWDRRNAQSACFYSVLV 343
Cdd:pfam08409 2 GQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
597-852 |
2.67e-30 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 120.11 E-value: 2.67e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 597 IAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYL 674
Cdd:COG0457 1 LELDPddAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 675 NLGISFIALGKRQQAIEILQAGSNLDGAAVRdrtahdqarssAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQqrei 754
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAE-----------ALYNLGLALLELGRYDEAIEAYERALELDPDDAD---- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 755 LYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARNSSRASEAEMWFKRALKLAPEQASVYHHYAEFLSL 834
Cdd:COG0457 146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLL 225
|
250
....*....|....*...
gi 19920486 835 QSRHHESAIYHRRAAELA 852
Cdd:COG0457 226 ALALLLALRLAALALYQY 243
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
615-886 |
4.71e-30 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 120.60 E-value: 4.71e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 615 QGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQ 694
Cdd:COG2956 21 NGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 695 AGSNLDGAAVrdrtahdqarsSAYLQLGALYVEQGKLQRALAIYREALSSLPglpqQREILYQRIGDVLGRLQQWDEAER 774
Cdd:COG2956 101 KLLELDPDDA-----------EALRLLAEIYEQEGDWEKAIEVLERLLKLGP----ENAHAYCELAELYLEQGDYDEAIE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 775 HHRAALELQPNQVAAHLSYGiTLARNSSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPN 854
Cdd:COG2956 166 ALEKALKLDPDCARALLLLA-ELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS 244
|
250 260 270
....*....|....*....|....*....|..
gi 19920486 855 DyTLVVAAATAMRLLDRKVDAEMWYRKAVALR 886
Cdd:COG2956 245 D-DLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
640-920 |
3.63e-29 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 117.91 E-value: 3.63e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 640 FNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQagsNLdgaavrdrTAHDQARSSAYL 719
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQ---KL--------LERDPDRAEALL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 720 QLGALYVEQGKLQRALAIYREALSSLPGLPQqreiLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGiTLAR 799
Cdd:COG2956 81 ELAQDYLKAGLLDRAEELLEKLLELDPDDAE----ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELA-ELYL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 800 NSSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTLVVAAATAMRLLDRKVDAEMWY 879
Cdd:COG2956 156 EQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELL 235
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 19920486 880 RKAVALRPGDAhAHTNLGAILHLLGRTNHAAASYKAALRLQ 920
Cdd:COG2956 236 RKALELDPSDD-LLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
592-850 |
1.12e-28 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 116.37 E-value: 1.12e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 592 LYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNL 669
Cdd:COG2956 30 LLEEALELDPetVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 670 AVAYLNLGISFIALGKRQQAIEILQAGSNLDGAAVRdrtahdqarssAYLQLGALYVEQGKLQRALAIYREALSSLPGLP 749
Cdd:COG2956 110 AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAH-----------AYCELAELYLEQGDYDEAIEALEKALKLDPDCA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 750 QqreiLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGiTLARNSSRASEAEMWFKRALKLAPeQASVYHHYA 829
Cdd:COG2956 179 R----ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLA-ELYEKLGDPEEALELLRKALELDP-SDDLLLALA 252
|
250 260
....*....|....*....|.
gi 19920486 830 EFLSLQSRHHESAIYHRRAAE 850
Cdd:COG2956 253 DLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
578-815 |
5.64e-28 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 113.56 E-value: 5.64e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 578 RTLRRNADWRDEESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAA 655
Cdd:COG0457 16 LAYRRLGRYEEAIEDYEKALELDPddAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 656 VECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGsnldgaavrdrTAHDQARSSAYLQLGALYVEQGKLQRAL 735
Cdd:COG0457 96 LEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERA-----------LELDPDDADALYNLGIALEKLGRYEEAL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 736 AIYREALSSLPGLPQQREILYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARNSSRASEAEMWFKRAL 815
Cdd:COG0457 165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
629-886 |
1.61e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 106.24 E-value: 1.61e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 629 IRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLDgaavrdrt 708
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD-------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 709 aHDQARssAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQqreiLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVA 788
Cdd:COG0457 73 -PDDAE--ALNNLGLALQALGRYEEALEDYDKALELDPDDAE----ALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 789 AHLSYGITLARnSSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTLVVAAATAMRL 868
Cdd:COG0457 146 ALYNLGIALEK-LGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
|
250
....*....|....*...
gi 19920486 869 LDRKVDAEMWYRKAVALR 886
Cdd:COG0457 225 LALALLLALRLAALALYQ 242
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
717-920 |
1.12e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 103.93 E-value: 1.12e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 717 AYLQLGALYVEQGKLQRALAIYREALSSLPGLPQqreiLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGIT 796
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAE----ALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 797 LARnSSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTLVVAAATAMRLLDRKVDAE 876
Cdd:COG0457 86 LQA-LGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 19920486 877 MWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYKAALRLQ 920
Cdd:COG0457 165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
669-933 |
1.40e-24 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 104.43 E-value: 1.40e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 669 LAVAYLNLGISFIALGKRQQAIEILQAGSNLDGAAVRdrtahdqarssAYLQLGALYVEQGKLQRALAIYREALSSLPgl 748
Cdd:COG2956 7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVE-----------AHLALGNLYRRRGEYDRAIRIHQKLLERDP-- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 749 pqQREILYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARnSSRASEAEMWFKRALKLAPEQASVYHHY 828
Cdd:COG2956 74 --DRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQ-EGDWEKAIEVLERLLKLGPENAHAYCEL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 829 AEfLSLQSRHHESAIYH-RRAAELAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTN 907
Cdd:COG2956 151 AE-LYLEQGDYDEAIEAlEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE 229
|
250 260
....*....|....*....|....*.
gi 19920486 908 HAAASYKAALRLQPGDAITLgNLAKL 933
Cdd:COG2956 230 EALELLRKALELDPSDDLLL-ALADL 254
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
663-920 |
2.76e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 102.78 E-value: 2.76e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 663 IKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLDgaavrdrtahdQARSSAYLQLGALYVEQGKLQRALAIYREAL 742
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELD-----------PDDAEALYNLGLAYLRLGRYEEALADYEQAL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 743 SSLPGLPQqreiLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARnSSRASEAEMWFKRALKLAPEQA 822
Cdd:COG0457 70 ELDPDDAE----ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLE-LGRYDEAIEAYERALELDPDDA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 823 SVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHAHTNLGAILHL 902
Cdd:COG0457 145 DALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
|
250
....*....|....*...
gi 19920486 903 LGRTNHAAASYKAALRLQ 920
Cdd:COG0457 225 LALALLLALRLAALALYQ 242
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
713-933 |
7.29e-24 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 102.50 E-value: 7.29e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 713 ARSSAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQqreiLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLS 792
Cdd:COG2956 6 AAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVE----AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 793 YGiTLARNSSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTLVVAAATAMRLLDRK 872
Cdd:COG2956 82 LA-QDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDY 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 19920486 873 VDAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYKAALRLQPGDAITLGNLAKL 933
Cdd:COG2956 161 DEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
756-925 |
7.31e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 101.62 E-value: 7.31e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 756 YQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARnSSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQ 835
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLR-LGRYEEALADYEQALELDPDDAEALNNLGLALQAL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 836 SRHHESAIYHRRAAELAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYKA 915
Cdd:COG0457 90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169
|
170
....*....|
gi 19920486 916 ALRLQPGDAI 925
Cdd:COG0457 170 LEAAALAALL 179
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
639-858 |
1.04e-23 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 107.39 E-value: 1.04e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 639 HFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIE-ILQAGSNLDGAAVRDRTAHDQArssA 717
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAaALLALAAGEAAAAAAALLLLAA---L 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 718 YLQLGALYVEQGKLQRALAIYREALSSLPGLPQqreiLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITL 797
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAE----ALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 19920486 798 ARNsSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTL 858
Cdd:COG3914 157 RRL-GRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
577-700 |
2.10e-23 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 106.23 E-value: 2.10e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 577 LRTLRRNADWRDEESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPA 654
Cdd:COG3914 85 ALLLQALGRYEEALALYRRALALNPdnAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEE 164
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 19920486 655 AVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLD 700
Cdd:COG3914 165 AIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
780-933 |
2.46e-22 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 97.00 E-value: 2.46e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 780 LELQPNQVAAHLSYGITLaRNSSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTLV 859
Cdd:COG0457 1 LELDPDDAEAYNNLGLAY-RRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAL 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19920486 860 VAAATAMRLLDRKVDAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYKAALRLQPGDAITLGNLAKL 933
Cdd:COG0457 80 NNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
686-896 |
2.90e-22 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 102.76 E-value: 2.90e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 686 RQQAIEILQAGSNLDGAAVRDRTAHDQARSSAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQQREIL---YQRIGDV 762
Cdd:COG3914 8 ALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLaalLELAALL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 763 LGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARnSSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESA 842
Cdd:COG3914 88 LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLA-LGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAI 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 19920486 843 IYHRRAAELAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHAHTNL 896
Cdd:COG3914 167 AALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
617-872 |
1.27e-21 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 100.45 E-value: 1.27e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 617 RYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQag 696
Cdd:COG3914 59 LLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALR-- 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 697 snldgAAVRDRTAHDQarssAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQqreiLYQRIGDVLGRLQQWDEAERHH 776
Cdd:COG3914 137 -----RALALNPDFAE----AYLNLGEALRRLGRLEEAIAALRRALELDPDNAE----ALNNLGNALQDLGRLEEAIAAY 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 777 RAALELQPNQVAAH--LSYGITLARNSSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHEsaiyHRRAAELAPN 854
Cdd:COG3914 204 RRALELDPDNADAHsnLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLAL----ARAWAQLVAA 279
|
250
....*....|....*...
gi 19920486 855 DYTLVVAAATAMRLLDRK 872
Cdd:COG3914 280 AAAPELPPPPNPRDPDRK 297
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
596-932 |
1.81e-21 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 100.54 E-value: 1.81e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 596 AIAINPPKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLN 675
Cdd:TIGR02917 323 KYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 676 LGISFIALGKRQQAIEILQAGSNLDGAAVRdrtahdqarssAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQqreiL 755
Cdd:TIGR02917 403 LGISKLSQGDPSEAIADLETAAQLDPELGR-----------ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNAS----L 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 756 YQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAhLSYGITLARNSSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQ 835
Cdd:TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA-AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT 546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 836 SRHHESAIYHRRAAELAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYKA 915
Cdd:TIGR02917 547 GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626
|
330
....*....|....*..
gi 19920486 916 ALRLQPGDAITLGNLAK 932
Cdd:TIGR02917 627 LLALQPDSALALLLLAD 643
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
590-783 |
2.92e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 94.80 E-value: 2.92e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 590 ESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRP 667
Cdd:COG2956 96 EELLEKLLELDPddAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDP 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 668 NLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGAAVrdrtahdqarsSAYLQLGALYVEQGKLQRALAIYREALSSLPG 747
Cdd:COG2956 176 DCARALLLLAELYLEQGDYEEAIAALERALEQDPDYL-----------PALPRLAELYEKLGDPEEALELLRKALELDPS 244
|
170 180 190
....*....|....*....|....*....|....*.
gi 19920486 748 LPqqreiLYQRIGDVLGRLQQWDEAERHHRAALELQ 783
Cdd:COG2956 245 DD-----LLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
593-923 |
2.22e-20 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 97.08 E-value: 2.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 593 YRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLA 670
Cdd:TIGR02917 216 YRKAIALRPnnIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYL 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 671 VAYLNLGISFIALGKRQQAIEILQagsnldgaAVRDRTAHD-QARssayLQLGALYVEQGKLQRALAIYREALSSLPGLP 749
Cdd:TIGR02917 296 PALLLAGASEYQLGNLEQAYQYLN--------QILKYAPNShQAR----RLLASIQLRLGRVDEAIATLSPALGLDPDDP 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 750 QQREILyqriGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGIT-LARNSSRASEAEMW------------------ 810
Cdd:TIGR02917 364 AALSLL----GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISkLSQGDPSEAIADLEtaaqldpelgradlllil 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 811 -------FKRALKLA-------PEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTLVVAAATAMRLLDRKVDAE 876
Cdd:TIGR02917 440 sylrsgqFDKALAAAkklekkqPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 19920486 877 MWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYKAALRLQPGD 923
Cdd:TIGR02917 520 QRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQE 566
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
590-931 |
2.57e-20 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 97.08 E-value: 2.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 590 ESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRP 667
Cdd:TIGR02917 485 REAFEKALSIEPdfFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 668 NLAVAYLNLGISFIALGKRQQAIEILqagsnldgaavrdRTAHDQARSS--AYLQLGALYVEQGKLQRALAIYREALSSL 745
Cdd:TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAIL-------------NEAADAAPDSpeAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 746 PglpQQREILYqRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGiTLARNSSRASEAEMWFKRALKLAPEQASVY 825
Cdd:TIGR02917 632 P---DSALALL-LLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA-QLLLAAKRTESAKKIAKSLQKQHPKAALGF 706
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 826 HHYAEFLSLQSRHHESAIYHRRAAELAPNDYTlVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHAHTNLGAILHLLGR 905
Cdd:TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKRAPSSQN-AIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD 785
|
330 340
....*....|....*....|....*.
gi 19920486 906 TNHAAASYKAALRLQPGDAITLGNLA 931
Cdd:TIGR02917 786 YDKAIKHYQTVVKKAPDNAVVLNNLA 811
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
590-933 |
4.97e-20 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 95.92 E-value: 4.97e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 590 ESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRP 667
Cdd:TIGR02917 145 QKSYEQALAIDPrsLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 668 NLAVAYLNLGISFIALGK----RQQAIEILQAGSN------LDGAAVRDRTAHDQARSS-------------AYLQLGAL 724
Cdd:TIGR02917 225 NNIAVLLALATILIEAGEfeeaEKHADALLKKAPNsplahyLKALVDFQKKNYEDARETlqdalksapeylpALLLAGAS 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 725 YVEQGKLQRALAIYREALSSLPGLPQQREILyqriGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARNSSrA 804
Cdd:TIGR02917 305 EYQLGNLEQAYQYLNQILKYAPNSHQARRLL----ASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD-F 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 805 SEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRhHESAIYH-RRAAELAPNdyTLVVAAATAMRLLDR-KVDAEM-WYRK 881
Cdd:TIGR02917 380 EKAAEYLAKATELDPENAAARTQLGISKLSQGD-PSEAIADlETAAQLDPE--LGRADLLLILSYLRSgQFDKALaAAKK 456
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 19920486 882 AVALRPGDAHAHTNLGAILHLLGRTNHAAASYKAALRLQPGDAITLGNLAKL 933
Cdd:TIGR02917 457 LEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI 508
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
581-743 |
2.85e-19 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 87.66 E-value: 2.85e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 581 RRNADWRD-EESLYRSAIAINPPKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECF 659
Cdd:COG4785 51 AALAAAALaAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDF 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 660 QRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGAAV---------RDRTAHDQARSSAYLQLGALYVEQGK 730
Cdd:COG4785 131 DRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPeralwlylaERKLDPEKALALLLEDWATAYLLQGD 210
|
170
....*....|...
gi 19920486 731 LQRALAIYREALS 743
Cdd:COG4785 211 TEEARELFKLALA 223
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
740-933 |
5.26e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 92.36 E-value: 5.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 740 EALSSLPGLPQQREILYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARNSSRASEAEmwfkrALKLAP 819
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAA-----AAAALL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 820 EQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHAHTNLGAI 899
Cdd:COG3914 76 LLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA 155
|
170 180 190
....*....|....*....|....*....|....
gi 19920486 900 LHLLGRTNHAAASYKAALRLQPGDAITLGNLAKL 933
Cdd:COG3914 156 LRRLGRLEEAIAALRRALELDPDNAEALNNLGNA 189
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
712-855 |
7.02e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 84.09 E-value: 7.02e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 712 QARSSAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQqreiLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHL 791
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPE----AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARL 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19920486 792 SYGITLARnSSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPND 855
Cdd:COG4783 77 NLGLALLK-AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
577-742 |
2.34e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 86.32 E-value: 2.34e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 577 LRTLRRNADWRDEESLYRSAIAINPPKA--LGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPA 654
Cdd:COG2956 117 AEIYEQEGDWEKAIEVLERLLKLGPENAhaYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 655 AVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQagsnldgaavrdRTAHDQARSSAYLQLGALYVEQGKLQRA 734
Cdd:COG2956 197 AIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLR------------KALELDPSDDLLLALADLLERKEGLEAA 264
|
....*...
gi 19920486 735 LAIYREAL 742
Cdd:COG2956 265 LALLERQL 272
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
636-786 |
3.30e-18 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 82.16 E-value: 3.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 636 ADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGsnldgaavrdrTAHDQARS 715
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEA-----------LELDPDEP 72
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 19920486 716 SAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQqreiLYQRIGDVLGRLQQWDEAERHHRAALELQPNQ 786
Cdd:COG4783 73 EARLNLGLALLKAGDYDEALALLEKALKLDPEHPE----AYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
578-700 |
7.52e-18 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 81.01 E-value: 7.52e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 578 RTLRRNADWRDEESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAA 655
Cdd:COG4783 12 QALLLAGDYDEAEALLEKALELDPdnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEA 91
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 19920486 656 VECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLD 700
Cdd:COG4783 92 LALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
613-930 |
1.05e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 88.60 E-value: 1.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 613 SSQGRYEEAKQVLQE------------AIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISF 680
Cdd:TIGR02917 21 SPEELIEAAKSYLQKnkykaaiiqlknALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 681 IALGKRQQAIEILQAGSNLDG------------------------AAVRDRTAHDQARSSAYLQLGALYVEQGKLQRALA 736
Cdd:TIGR02917 101 LLQGKFQQVLDELPGKTLLDDegaaellalrglaylglgqlelaqKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARA 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 737 IYREALSSLPGlpqQREILYQRiGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARnSSRASEAEMWFKRALK 816
Cdd:TIGR02917 181 LIDEVLTADPG---NVDALLLK-GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIE-AGEFEEAEKHADALLK 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 817 LAPEQASVyHHYAEFLSLQSRHHESAIYH-RRAAELAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHAHTN 895
Cdd:TIGR02917 256 KAPNSPLA-HYLKALVDFQKKNYEDARETlQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRL 334
|
330 340 350
....*....|....*....|....*....|....*
gi 19920486 896 LGAILHLLGRTNHAAASYKAALRLQPGDAITLGNL 930
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLL 369
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
608-746 |
1.31e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 77.54 E-value: 1.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 608 LGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQ 687
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 19920486 688 QAIEILQagsnldgAAVRDRTAHdqarSSAYLQLGALYVEQGKLQRALAIYREALSSLP 746
Cdd:COG4783 90 EALALLE-------KALKLDPEH----PEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
595-875 |
8.44e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 82.44 E-value: 8.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 595 SAIAINPPKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYL 674
Cdd:TIGR02917 594 ADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 675 NLGISFIALGKRQQAIEILQagsnldgaavrdrTAHDQARSSA--YLQLGALYVEQGKLQRALAIYREALSSLPG---LP 749
Cdd:TIGR02917 674 GLAQLLLAAKRTESAKKIAK-------------SLQKQHPKAAlgFELEGDLYLRQKDYPAAIQAYRKALKRAPSsqnAI 740
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 750 QQREIL---------------YQRI-----------GDVLGRLQQWDEAERHHRAALELQPNQVAAH--LSYgitLARNS 801
Cdd:TIGR02917 741 KLHRALlasgntaeavktleaWLKThpndavlrtalAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLnnLAW---LYLEL 817
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19920486 802 SRAsEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTLVVAAATAMRLLDRKVDA 875
Cdd:TIGR02917 818 KDP-RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
620-754 |
2.97e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 73.12 E-value: 2.97e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 620 EAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNL 699
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 19920486 700 DGAAVRdrtahdqarssAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQQREI 754
Cdd:COG4235 81 DPDNPE-----------ALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLL 124
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
786-923 |
4.98e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 72.92 E-value: 4.98e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 786 QVAAHLSYGITLARNSsRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTLVVAAATA 865
Cdd:COG4783 3 CAEALYALAQALLLAG-DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 19920486 866 MRLLDRKVDAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYKAALRLQPGD 923
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
593-695 |
1.50e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 71.19 E-value: 1.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 593 YRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLA 670
Cdd:COG4235 6 LRQALAANPndAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90 100
....*....|....*....|....*
gi 19920486 671 VAYLNLGISFIALGKRQQAIEILQA 695
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQK 110
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
639-884 |
1.32e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 71.10 E-value: 1.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 639 HFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNlgisfIALGKRQQAIEILQAGSNLDGAAVRDRTAHDQARSSAY 718
Cdd:COG4785 2 YALALALLLALALAAAAASKAAILLAALLFAAVLALA-----IALADLALALAAAALAAAALAAERIDRALALPDLAQLY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 719 LQLGALYVEQGKLQRALAIYREALSSLPGLPqqrEILYQRiGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLa 798
Cdd:COG4785 77 YERGVAYDSLGDYDLAIADFDQALELDPDLA---EAYNNR-GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIAL- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 799 RNSSRASEAEMWFKRALKLAPEqaSVYHHYAEFLSLQSRHHESAIyhrraaelapndYTLVVAAATAMRLLDRKVDAEMW 878
Cdd:COG4785 152 YYLGRYELAIADLEKALELDPN--DPERALWLYLAERKLDPEKAL------------ALLLEDWATAYLLQGDTEEAREL 217
|
....*.
gi 19920486 879 YRKAVA 884
Cdd:COG4785 218 FKLALA 223
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
611-705 |
1.41e-13 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 67.12 E-value: 1.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 611 VLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVEcFQRAIKFRPNLAVAYLNLGISFIALGKRQQAI 690
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....*
gi 19920486 691 EILQAGSNLDGAAVR 705
Cdd:COG3063 80 AYLERALELDPSALR 94
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
573-700 |
3.08e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 68.45 E-value: 3.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 573 AAMSLRTLRRNADWRDEESLYRSAIAINPPKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVY 652
Cdd:COG5010 25 EKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDK 104
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 19920486 653 PAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLD 700
Cdd:COG5010 105 DEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
591-932 |
1.26e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 72.04 E-value: 1.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 591 SLYRSAIAINP---PKALgNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRP 667
Cdd:TIGR02917 554 AWLEKAAELNPqeiEPAL-ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP 632
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 668 NLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGAAVRdrtahdqarssAYLQLGALYVEQGKLQRALAIYREALSSLPG 747
Cdd:TIGR02917 633 DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE-----------AQIGLAQLLLAAKRTESAKKIAKSLQKQHPK 701
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 748 LPQQREILyqriGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLArnSSRASEAEMWFKRALKLAPEQASVYHH 827
Cdd:TIGR02917 702 AALGFELE----GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLA--SGNTAEAVKTLEAWLKTHPNDAVLRTA 775
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 828 YAEFLSLQSRHHESAIYHRRAAELAPNDytLVVAAATAMRLLDRK-VDAEMWYRKAVALRPGDAHAHTNLGAILHLLGRT 906
Cdd:TIGR02917 776 LAELYLAQKDYDKAIKHYQTVVKKAPDN--AVVLNNLAWLYLELKdPRALEYAERALKLAPNIPAILDTLGWLLVEKGEA 853
|
330 340
....*....|....*....|....*.
gi 19920486 907 NHAAASYKAALRLQPGDAITLGNLAK 932
Cdd:TIGR02917 854 DRALPLLRKAVNIAPEAAAIRYHLAL 879
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
580-669 |
1.66e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 64.04 E-value: 1.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 580 LRRNADWRDEESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQvLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVE 657
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPdnADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|..
gi 19920486 658 CFQRAIKFRPNL 669
Cdd:COG3063 81 YLERALELDPSA 92
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
806-924 |
1.98e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 65.03 E-value: 1.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 806 EAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVAL 885
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 19920486 886 RPGDAHAHTNLGAILHLLGRTNHAAASYKAALRLQPGDA 924
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
733-855 |
6.63e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 63.49 E-value: 6.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 733 RALAIYREALSSLPGLPQqreiLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARnSSRASEAEMWFK 812
Cdd:COG4235 1 EAIARLRQALAANPNDAE----GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLA-AGDTEEAEELLE 75
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 19920486 813 RALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPND 855
Cdd:COG4235 76 RALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
645-750 |
1.62e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 61.34 E-value: 1.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 645 LHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAgsnldgaavrdrTAHDQARSSAYLQLGAL 724
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKA------------LKLDPNNAEALLNLAEL 68
|
90 100
....*....|....*....|....*.
gi 19920486 725 YVEQGKLQRALAIYREALSSLPGLPQ 750
Cdd:COG3063 69 LLELGDYDEALAYLERALELDPSALR 94
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
702-853 |
3.41e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 62.29 E-value: 3.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 702 AAVRDRTAHDQARSSAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQQREILYQRIGDVLGRLQQWDEAERHHRAALE 781
Cdd:COG5010 3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 19920486 782 LQPNQVAAHLSYGITLARNsSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAP 853
Cdd:COG5010 83 LDPNNPELYYNLALLYSRS-GDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
771-892 |
3.68e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.56 E-value: 3.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 771 EAERHHRAALELQPNQVAAHLSYGITLARNSsRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAE 850
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLG-RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALA 79
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 19920486 851 LAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHA 892
Cdd:COG4235 80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
578-668 |
4.24e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 61.75 E-value: 4.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 578 RTLRRNADWRDEESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAA 655
Cdd:COG4783 46 EILLQLGDLDEAIVLLHEALELDPdePEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEA 125
|
90
....*....|...
gi 19920486 656 VECFQRAIKFRPN 668
Cdd:COG4783 126 IAALEKALELDPD 138
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
820-933 |
6.11e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.98 E-value: 6.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 820 EQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHAHTNLGAI 899
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110
....*....|....*....|....*....|....
gi 19920486 900 LHLLGRTNHAAASYKAALRLQPGDAITLGNLAKL 933
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARA 115
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
578-674 |
6.63e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.79 E-value: 6.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 578 RTLRRNADWRDEESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAA 655
Cdd:COG4235 25 RAYLRLGRYDEALAAYEKALRLDPdnADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEA 104
|
90
....*....|....*....
gi 19920486 656 VECFQRAIKFRPNLAVAYL 674
Cdd:COG4235 105 IAAWQKLLALLPADAPARL 123
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
615-865 |
1.40e-10 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 65.01 E-value: 1.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 615 QGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLG-ISFIaLGKRQQAIEIL 693
Cdd:TIGR00990 344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAqLHFI-KGEFAQAGKDY 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 694 QAGSNLDGAAVrdrtahdqarsSAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQqreiLYQRIGDVLGRLQQWDEAE 773
Cdd:TIGR00990 423 QKSIDLDPDFI-----------FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD----VYNYYGELLLDQNKFDEAI 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 774 RHHRAALELQPN------QVAAHLSYGITLARNSSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRR 847
Cdd:TIGR00990 488 EKFDTAIELEKEtkpmymNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567
|
250
....*....|....*...
gi 19920486 848 AAELAPNDYTLVVAAATA 865
Cdd:TIGR00990 568 AAELARTEGELVQAISYA 585
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
654-791 |
2.24e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 59.25 E-value: 2.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 654 AAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGAavrdrtahdqaRSSAYLQLGALYVEQGKLQR 733
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD-----------NADALLDLAEALLAAGDTEE 69
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 19920486 734 ALAIYREALSSLPGLPQQREILyqriGDVLGRLQQWDEAERHHRAALELQPNQVAAHL 791
Cdd:COG4235 70 AEELLERALALDPDNPEALYLL----GLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
762-856 |
3.52e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 57.49 E-value: 3.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 762 VLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARNsSRASEAEMwFKRALKLAPEQASVYHHYAEFLSLQSRHHES 841
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQ-GRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|....*
gi 19920486 842 AIYHRRAAELAPNDY 856
Cdd:COG3063 79 LAYLERALELDPSAL 93
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
559-667 |
8.45e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.43 E-value: 8.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 559 RTRNILLLSFSLLLAAMSLRTLRRNADWRDEESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMA 636
Cdd:COG5010 43 AAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPnnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP 122
|
90 100 110
....*....|....*....|....*....|.
gi 19920486 637 DVHFNLGILHQNQQVYPAAVECFQRAIKFRP 667
Cdd:COG5010 123 NAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
772-921 |
8.78e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.43 E-value: 8.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 772 AERHHRAALELQPNQVAAHLSYGITLARNSSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAEL 851
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 852 APNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYKAALRLQP 921
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
813-933 |
1.19e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.05 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 813 RALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHA 892
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 19920486 893 HTNLGAILHLLGRTNHAAASYKAALRLQPGDAITLGNLAKL 933
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAAL 131
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
687-819 |
2.50e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.89 E-value: 2.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 687 QQAIEILQAGSNLDGAAVRDRTAHDQARSSAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQqreiLYQRIGDVLGRL 766
Cdd:COG5010 26 KYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE----LYYNLALLYSRS 101
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 19920486 767 QQWDEAERHHRAALELQPNQVAAHLSYGITLARNsSRASEAEMWFKRALKLAP 819
Cdd:COG5010 102 GDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL-GQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
846-931 |
3.78e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.78 E-value: 3.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 846 RRAAELAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYKAALRLQPGDAI 925
Cdd:COG4235 7 RQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPE 86
|
....*.
gi 19920486 926 TLGNLA 931
Cdd:COG4235 87 ALYLLG 92
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
590-938 |
5.51e-09 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 60.10 E-value: 5.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 590 ESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQ--------------QVYP 653
Cdd:PRK11447 289 IPELQQAVRANPkdSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRywlliqqgdaalkaNNLA 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 654 AAVECFQRAIKFRPNLAVAYLNLGisfialgkrqqaiEILQAGSNLDGAAVRDRTA--HDQARSSAYLQLGALYVEQGKl 731
Cdd:PRK11447 369 QAERLYQQARQVDNTDSYAVLGLG-------------DVAMARKDYAAAERYYQQAlrMDPGNTNAVRGLANLYRQQSP- 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 732 QRALAIyreaLSSLPGlPQQREI----------LYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLaRNS 801
Cdd:PRK11447 435 EKALAF----IASLSA-SQRRSIddierslqndRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL-RQA 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 802 SRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRhHESAIYHRRaaelapndyTLVVAAATA-MRLLDRKVDAEMWYR 880
Cdd:PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDR-DRAALAHLN---------TLPRAQWNSnIQELAQRLQSDQVLE 578
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 19920486 881 KAVALR-PGDAHAHTNL-------GAILHLLG-----RTNHAAA--SYKAALRLQPGDAItlgnlAKLGVTNV 938
Cdd:PRK11447 579 TANRLRdSGKEAEAEALlrqqppsTRIDLTLAdwaqqRGDYAAAraAYQRVLTREPGNAD-----ARLGLIEV 646
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
874-933 |
1.81e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.87 E-value: 1.81e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 874 DAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNhAAASYKAALRLQPGDAITLGNLAKL 933
Cdd:COG3063 10 EAEEYYEKALELDPDNADALNNLGLLLLEQGRYD-EAIALEKALKLDPNNAEALLNLAEL 68
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
712-900 |
3.48e-08 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 55.42 E-value: 3.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 712 QARSSAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQ---QREILYQRIGDVlgrlqqwDEAERHHRAALELQPNQVA 788
Cdd:TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLaylALALYYQQLGEL-------EKAEDSFRRALTLNPNNGD 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 789 AHLSYGITLARnSSRASEAEMWFKRALK--LAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPND----YTLV--- 859
Cdd:TIGR02521 101 VLNNYGTFLCQ-QGKYEQAMQQFEQAIEdpLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRpeslLELAely 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 19920486 860 -----VAAATAM--RLLDRKV-DAEM-WYRKAVALRPGDAHAHTNLGAIL 900
Cdd:TIGR02521 180 ylrgqYKDARAYleRYQQTYNqTAESlWLGIRIARALGDVAAAQRYGAQL 229
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
578-672 |
5.97e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.92 E-value: 5.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 578 RTLRRNADWRDEESLYRSAIAINP-----PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPN---MADVHFNLGILHQNQ 649
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPnsplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLEL 80
|
90 100
....*....|....*....|...
gi 19920486 650 QVYPAAVECFQRAIKFRPNLAVA 672
Cdd:COG1729 81 GDYDKARATLEELIKKYPDSEAA 103
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
609-650 |
2.07e-07 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 47.85 E-value: 2.07e-07
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 19920486 609 GSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQ 650
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
668-818 |
2.14e-07 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 53.85 E-value: 2.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 668 NLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGAAVrdrtahdqarssAYLQLGALYVEQGKLQRALAIYREAL----- 742
Cdd:pfam17874 45 VLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLW------------ALLQQGEILRAQGRLHQALETYQQALqlard 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 743 SSLPGLPQQrEILYQRIGDVLGRLQQWDEAERHHRAALEL-QPNQVAAHL-SY----GITLARNssRASEAEMWFKRALK 816
Cdd:pfam17874 113 HGLQHLPLH-GFLLVGLADLLYEWNDLEEAEQHAQQGIQLgRQWEPDAAVdAYvllaRIALAQG--ELEEALTLLRRAEL 189
|
..
gi 19920486 817 LA 818
Cdd:pfam17874 190 LA 191
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
834-921 |
2.24e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.78 E-value: 2.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 834 LQSRHHESAI-YHRRAAELAPNDYTLVVAAATAMRLLDRKVDAEMwYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAAS 912
Cdd:COG3063 3 LKLGDLEEAEeYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81
|
....*....
gi 19920486 913 YKAALRLQP 921
Cdd:COG3063 82 LERALELDP 90
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
733-930 |
3.23e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 52.22 E-value: 3.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 733 RALAIYREALSSLPGLPQQREILYQRIGDVLGRLQQWDEAERHHRAALELqPNQVAAHLSYGITLARNSSRAsEAEMWFK 812
Cdd:COG4785 20 SKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYD-LAIADFD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 813 RALKLAPEQASVYHHYAeFLSLQSRHHESAIyhrraaelapndytlvvaaatamrlldrkvdaeMWYRKAVALRPGDAHA 892
Cdd:COG4785 98 QALELDPDLAEAYNNRG-LAYLLLGDYDAAL---------------------------------EDFDRALELDPDYAYA 143
|
170 180 190
....*....|....*....|....*....|....*...
gi 19920486 893 HTNLGAILHLLGRTNHAAASYKAALRLQPGDAITLGNL 930
Cdd:COG4785 144 YLNRGIALYYLGRYELAIADLEKALELDPNDPERALWL 181
|
|
| gliding_GltE |
NF033758 |
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ... |
652-931 |
4.33e-07 |
|
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.
Pssm-ID: 468174 [Multi-domain] Cd Length: 411 Bit Score: 53.29 E-value: 4.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 652 YPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQagsnldgAAVRDRTAHDQARSSaylqLGALYVEQGKL 731
Cdd:NF033758 68 YPSLERKFKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYK-------AALKKKPTLRQASEN----LAVMAQNAGDV 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 732 QRALAIYREALSSLPGLPQQREIL---YQRIGDvlgrlqqWDEAERHHRAALELQPNQVAAH----LSYgitLARnsSRA 804
Cdd:NF033758 137 AGAVALYQDVLKRYPDDASSRARLaeiYRQTGD-------HDKAMELSRAALMRDPQSTTALkvmmRSY---LDR--KQL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 805 SEAEMWFKRALKL---APEqasvYHHYAEFLSLQSRHHESA-IYHRRAAELAPnDY--TLVVAAATAMRLLDRKvDAEMW 878
Cdd:NF033758 205 AMAKLVALRAVKIdqnDPE----LHHTVGLILLQEGDKDGArLQFKRALEVRA-DYvpSHVELAQLALDAEDYP-GAEEH 278
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 19920486 879 YRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYKAALRLQPGDAITLGNLA 931
Cdd:NF033758 279 LRRILQADGKNAAAHLNLGVAYKGQGQYDKAMQEYDEAEKLDPELAAIYLNRA 331
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
678-789 |
5.41e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 49.22 E-value: 5.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 678 ISFIALGKRQQAIEILQAgsnldgaaVRDRTAHDQARSSAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQQREILYq 757
Cdd:COG1729 1 KALLKAGDYDEAIAAFKA--------FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALL- 71
|
90 100 110
....*....|....*....|....*....|..
gi 19920486 758 RIGDVLGRLQQWDEAERHHRAALELQPNQVAA 789
Cdd:COG1729 72 KLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
|
|
| LcrH_SycD |
TIGR02552 |
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ... |
614-695 |
6.58e-07 |
|
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 49.60 E-value: 6.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 614 SQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEIL 693
Cdd:TIGR02552 29 QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKAL 108
|
..
gi 19920486 694 QA 695
Cdd:TIGR02552 109 DL 110
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
652-753 |
7.98e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 48.45 E-value: 7.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 652 YPAAVECFQRAIKFRPN---LAVAYLNLGISFIALGKRQQAIEILQAgsnldgaAVRDRTAHDQArSSAYLQLGALYVEQ 728
Cdd:COG1729 9 YDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEK-------LLKRYPDSPKA-PDALLKLGLSYLEL 80
|
90 100
....*....|....*....|....*
gi 19920486 729 GKLQRALAIYREALSSLPGLPQQRE 753
Cdd:COG1729 81 GDYDKARATLEELIKKYPDSEAAKE 105
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
648-921 |
9.03e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 49.60 E-value: 9.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 648 NQQVYPAAVECFQRAIKFRPNlAVAYLNLGISFIALGKRQQAIEILQAGSNLDG----AAVRDRTAHDQ--ARSSAYLQL 721
Cdd:TIGR00990 139 RNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPdyskALNRRANAYDGlgKYADALLDL 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 722 GALYVEQGKLQRALAIYREALSSLPGLPQQREILYQR---------IGDVLG------RLQQWDEAERHHRAALELQPNQ 786
Cdd:TIGR00990 218 TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKpenlpsvtfVGNYLQsfrpkpRPAGLEDSNELDEETGNGQLQL 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 787 VAAHLSygitlARNSSRASEAEMWFKRAL---KLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTLVVAAA 863
Cdd:TIGR00990 298 GLKSPE-----SKADESYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRA 372
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 19920486 864 TAMRLLDRKVDAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYKAALRLQP 921
Cdd:TIGR00990 373 SMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP 430
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
874-931 |
9.13e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.15 E-value: 9.13e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 19920486 874 DAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYKAALRLQPGDAITLGNLA 931
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLA 58
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
591-663 |
9.28e-06 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 48.78 E-value: 9.28e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 19920486 591 SLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPN-MADVHFNLGILHQNQQvypaAVECFQRAI 663
Cdd:cd24142 21 KFLQRALELEPnnVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLSGGEE----ALQYYEKGI 92
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
614-725 |
9.88e-06 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 48.39 E-value: 9.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 614 SQGRYEEAKQVLQEAIRFRPNMADVHFNLGILH-QNQQVyPAAVECFQRAIKFRPNL-AVAYLNLG--------ISFIal 683
Cdd:cd24142 12 DQGNFELALKFLQRALELEPNNVEALELLGEILlELGDV-EEAREVLLRAIELDPDGgYEKYLYLGqlsggeeaLQYY-- 88
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 19920486 684 gkrQQAIEILQAG-SNLDGAAVRDRTAHDQAR---SSAYLQLGALY 725
Cdd:cd24142 89 ---EKGIEILEEElQALQAASAEAEEEAEELKrklSSALCALAEIY 131
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
615-922 |
2.30e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 47.60 E-value: 2.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 615 QGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISF-IALGKRQQAIEIL 693
Cdd:COG3071 29 EGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAVLLTRAELlLDQGQAEQALATL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 694 QAgsnLDGAAVRdrtahdqaRSSAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQQREILYQRIgdVLGRLQQWDEAE 773
Cdd:COG3071 109 EA---LRAGAPR--------HPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEAQALERRA--YLGLLRQAARDA 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 774 RHHRAALELQP----NQVAAHLSYGITLARNSsRASEAEMWFKRALKLAPEQASVYhhyaEFLSLQSRHHESAIYH-RRA 848
Cdd:COG3071 176 EALKALWKALPraerRDPELAAAYARALIALG-DHDEAERLLREALKRQWDPRLVR----LYGRLQGGDPAKQLKRaEKW 250
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19920486 849 AELAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPgDAHAHTNLGAILHLLGRTNHAAASYKAALRLQPG 922
Cdd:COG3071 251 LKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
603-668 |
3.13e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.14 E-value: 3.13e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19920486 603 KALGNLGSVLSSQGRYEEAKQVLQEAIR--------FRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPN 668
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
628-695 |
3.46e-05 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 46.81 E-value: 3.46e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 19920486 628 AIRFRPNMADVhFN-LGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQA 695
Cdd:PRK11189 90 ALALRPDMADA-YNyLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLA 157
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
654-890 |
3.48e-05 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 47.77 E-value: 3.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 654 AAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGAAVRDRTAHDQARSSAY---LQLGALYVEQGK 730
Cdd:PRK11447 287 KAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYwllIQQGDAALKANN 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 731 LQRALAIYREALSslpglpQQREILYQRIG--DVLGRLQQWDEAERHHRAALELQP-NQVAAH--------------LSY 793
Cdd:PRK11447 367 LAQAERLYQQARQ------VDNTDSYAVLGlgDVAMARKDYAAAERYYQQALRMDPgNTNAVRglanlyrqqspekaLAF 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 794 GITLARnSSRASEAEMwfKRALKLAPEQASvyhhyAEFLSLQSRHHESAIYHRRAAELAPNDYTLVVAAATAMRLLDRKV 873
Cdd:PRK11447 441 IASLSA-SQRRSIDDI--ERSLQNDRLAQQ-----AEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS 512
|
250
....*....|....*..
gi 19920486 874 DAEMWYRKAVALRPGDA 890
Cdd:PRK11447 513 QADALMRRLAQQKPNDP 529
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
751-820 |
5.11e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.37 E-value: 5.11e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19920486 751 QREILYQRIGDVLGRLQQWDEAERHHRAALELQ--------PNQVAAHLSYGITLARnSSRASEAEMWFKRALKLAPE 820
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLE-LGRYEEALELLERALALAEK 77
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
581-924 |
5.45e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 47.16 E-value: 5.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 581 RRNADWRDEESLYRSAIAINPP--------KALGNLGSVLSSQGRYEEAKQVLQEAIRFR-------------PNMADVH 639
Cdd:COG3899 716 LARGAYAEALRYLERALELLPPdpeeeyrlALLLELAEALYLAGRFEEAEALLERALAARalaalaalrhgnpPASARAY 795
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 640 FNLGILHQNQqvYPAAVECFQRAIK------FRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGAAVRDRTAHDQA 713
Cdd:COG3899 796 ANLGLLLLGD--YEEAYEFGELALAlaerlgDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLAL 873
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 714 RSSAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQQREILYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSY 793
Cdd:COG3899 874 AAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAA 953
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 794 GITLARNSSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTLVVAAATAMRLLDRKV 873
Cdd:COG3899 954 LAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAA 1033
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 19920486 874 DAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYKAALRLQPGDA 924
Cdd:COG3899 1034 AALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAA 1084
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
669-742 |
8.51e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.60 E-value: 8.51e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19920486 669 LAVAYLNLGISFIALGKRQQAIEILQAGSNLdgaAVRDRTAHDQARSSAYLQLGALYVEQGKLQRALAIYREAL 742
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEI---ARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
612-933 |
8.84e-05 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 46.61 E-value: 8.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 612 LSSQGRYEEAKQVLQEAIRFRPNMADV---HFNLGILHQNQQvyPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQ 688
Cdd:PRK11447 122 LATTGRTEEALASYDKLFNGAPPELDLaveYWRLVAKLPAQR--PEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 689 AIEILQAGSnldgaavRDRTAHDQARSSAYLQLGALYV-EQG--KLQRALAIYRE---ALSSLPGLPQQREIL----YQr 758
Cdd:PRK11447 200 GFAVLEQMA-------KSPAGRDAAAQLWYGQIKDMPVsDASvaALQKYLQVFSDgdsVAAARSQLAEQQKQLadpaFR- 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 759 igdvlGRLQ--------QWDEAERHHRAALELQPNQVAAHLSYGITLARNSSRAsEAEMWFKRALKLAPEqasvyhhyae 830
Cdd:PRK11447 272 -----ARAQglaavdsgQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRA-RAVAQFEKALALDPH---------- 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 831 flSLQSRHHESAIyhrraaelAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAA 910
Cdd:PRK11447 336 --SSNRDKWESLL--------KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAE 405
|
330 340
....*....|....*....|...
gi 19920486 911 ASYKAALRLQPGDAITLGNLAKL 933
Cdd:PRK11447 406 RYYQQALRMDPGNTNAVRGLANL 428
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
635-694 |
1.11e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.60 E-value: 1.11e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19920486 635 MADVHFNLGILHQNQQVYPAAVECFQRAI--------KFRPNLAVAYLNLGISFIALGKRQQAIEILQ 694
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALeiarrllgPDHPLTATTLLNLGRLYLELGRYEEALELLE 69
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
644-684 |
1.41e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 40.15 E-value: 1.41e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 19920486 644 ILHQNQQvYPAAVECFQRAIKFRPNLAVAYLNLGISFIALG 684
Cdd:pfam13414 3 AYYEQGK-YEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
636-668 |
2.16e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 39.33 E-value: 2.16e-04
10 20 30
....*....|....*....|....*....|...
gi 19920486 636 ADVHFNLGILHQNQQVYPAAVECFQRAIKFRPN 668
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
879-931 |
2.87e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 43.37 E-value: 2.87e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 19920486 879 YRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYKAALRLQPGDAITLGNLA 931
Cdd:COG4785 96 FDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRG 148
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
652-755 |
2.96e-04 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 42.92 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 652 YPAAVECFQRAIKFRPN---LAVAYLNLGISFIALGKRQQAIEILQAgsnldgaavrdrtAHDQARSSAYLQL-GALYVE 727
Cdd:COG2976 106 LDKAAAQLQWVLDNAKDpalKALARLRLARVLLAQKKYDEALATLDA-------------VKPEAFAALYAELrGDILLA 172
|
90 100
....*....|....*....|....*...
gi 19920486 728 QGKLQRALAIYREALSSLPGLPQQREIL 755
Cdd:COG2976 173 QGDKAEARAAYQKALAALPEDAPLRQLL 200
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
812-934 |
4.00e-04 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 43.09 E-value: 4.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 812 KRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAAELAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVA--LRPGD 889
Cdd:TIGR02521 55 DKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEdpLYPQP 134
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 19920486 890 AHAHTNLGAILHLLGRTNHAAASYKAALRLQPGDAITLGNLAKLG 934
Cdd:TIGR02521 135 ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY 179
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
602-634 |
4.60e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.17 E-value: 4.60e-04
10 20 30
....*....|....*....|....*....|...
gi 19920486 602 PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPN 634
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
636-668 |
6.44e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.81 E-value: 6.44e-04
10 20 30
....*....|....*....|....*....|...
gi 19920486 636 ADVHFNLGILHQNQQVYPAAVECFQRAIKFRPN 668
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
718-840 |
6.57e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 42.56 E-value: 6.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 718 YLQLGALYVEQGKLQRALAIYREALSSLpgLPQQREILYQRIgDVLGRLQQWDEAERHHRAALELQP--NQVAAHLSYGI 795
Cdd:COG4700 92 RVRLADALLELGRYDEAIELYEEALTGI--FADDPHILLGLA-QALFELGRYAEALETLEKLIAKNPdfKSSDAHLLYAR 168
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 19920486 796 TLArNSSRASEAEMWFKRALKLAPEQASVYhHYAEFLSLQSRHHE 840
Cdd:COG4700 169 ALE-ALGDLEAAEAELEALARRYSGPEARY-RYAKFLARQGRTAE 211
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
603-634 |
7.51e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 37.76 E-value: 7.51e-04
10 20 30
....*....|....*....|....*....|..
gi 19920486 603 KALGNLGSVLSSQGRYEEAKQVLQEAIRFRPN 634
Cdd:pfam13181 2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
725-931 |
9.45e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.15 E-value: 9.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 725 YVEQGKLQRALAIYREALSSLPGLPQQREIL---YQRIGDVLGrlqqwdeAERHHRAALELQPNQVAAHLsyGITLARNS 801
Cdd:TIGR02917 32 YLQKNKYKAAIIQLKNALQKDPNDAEARFLLgkiYLALGDYAA-------AEKELRKALSLGYPKNQVLP--LLARAYLL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 802 SRAseaemwFKRALKLAP-------EQASVYHHYAEFLSLQSRHHESAiyhRRAAELA-----PNDYTLVVAAATAMRLl 869
Cdd:TIGR02917 103 QGK------FQQVLDELPgktllddEGAAELLALRGLAYLGLGQLELA---QKSYEQAlaidpRSLYAKLGLAQLALAE- 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 19920486 870 DRKVDAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYKAALRLQPGDAITLGNLA 931
Cdd:TIGR02917 173 NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALA 234
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
702-927 |
1.21e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 42.92 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 702 AAVRDRTAHdqarssAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQ--QREILYQRIGDVLGRLQQWDEAERHHRAA 779
Cdd:COG3899 698 AGERDRAAR------LLLRAARRALARGAYAEALRYLERALELLPPDPEeeYRLALLLELAEALYLAGRFEEAEALLERA 771
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 780 LELQPNQVAAHLSYGITLARNSSRAS----------EAEMWFKRALKLA------PEQASVYHHYAEFLSLQSRHHESAI 843
Cdd:COG3899 772 LAARALAALAALRHGNPPASARAYANlgllllgdyeEAYEFGELALALAerlgdrRLEARALFNLGFILHWLGPLREALE 851
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 844 YHRRAAELA---PNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYKAALRLQ 920
Cdd:COG3899 852 LLREALEAGletGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAAL 931
|
....*..
gi 19920486 921 PGDAITL 927
Cdd:COG3899 932 ALAAAAA 938
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
602-635 |
1.46e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.04 E-value: 1.46e-03
10 20 30
....*....|....*....|....*....|....
gi 19920486 602 PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNM 635
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
614-691 |
2.76e-03 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 39.61 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 614 SQGRYEEAKQVLQEAIRFRPNMAD---VHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNlgISFIALGKRQQAI 690
Cdd:CHL00033 47 SEGEYAEALQNYYEAMRLEIDPYDrsyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN--MAVICHYRGEQAI 124
|
.
gi 19920486 691 E 691
Cdd:CHL00033 125 E 125
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
602-933 |
3.77e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 41.38 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 602 PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILhqnqqvYPAAVECFQRAIKFRPNLAVAYLNLGISFI 681
Cdd:COG3899 830 ARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLAL------AAAAAAAAAAAALAAAAAAAARLLAAAAAA 903
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 682 ALGKRQQAIEILQAGSNLDGAAVRDRTAHDQARSSAYlQLGALYVEQGKLQRALAIYREALSSLPGLPQQREILYQRIGD 761
Cdd:COG3899 904 LAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAA-AAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAA 982
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 762 VLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARNSSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHES 841
Cdd:COG3899 983 AAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAAL 1062
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 842 AIYHRRAAELAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYKAALRLQP 921
Cdd:COG3899 1063 AAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAAAALLLLAAAL 1142
|
330
....*....|..
gi 19920486 922 GDAITLGNLAKL 933
Cdd:COG3899 1143 ALALAALLLLAA 1154
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
612-709 |
6.05e-03 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 38.50 E-value: 6.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 612 LSSQ--GRYEEAKQVLQEAIRFRPNMAD---VHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKR 686
Cdd:PRK02603 43 MSAQadGEYAEALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEK 122
|
90 100
....*....|....*....|...
gi 19920486 687 QQaieilQAGSNLDGAAVRDRTA 709
Cdd:PRK02603 123 AE-----EAGDQDEAEALFDKAA 140
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
612-747 |
7.13e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 39.51 E-value: 7.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 612 LSSQGRYEEAKQVLQEAIRFRPNMADVHFnLGILHQNQqvYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIE 691
Cdd:COG3071 203 LIALGDHDEAERLLREALKRQWDPRLVRL-YGRLQGGD--PAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKARE 279
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 19920486 692 ILQAGSNLdgaavrdrtahdQARSSAYLQLGALYVEQGKLQRALAIYREALSSLPG 747
Cdd:COG3071 280 YLEAALAL------------RPSAEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
892-923 |
7.83e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 34.70 E-value: 7.83e-03
10 20 30
....*....|....*....|....*....|..
gi 19920486 892 AHTNLGAILHLLGRTNHAAASYKAALRLQPGD 923
Cdd:pfam00515 3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PRK15174 |
PRK15174 |
Vi polysaccharide transport protein VexE; |
728-923 |
8.61e-03 |
|
Vi polysaccharide transport protein VexE;
Pssm-ID: 185096 [Multi-domain] Cd Length: 656 Bit Score: 39.73 E-value: 8.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 728 QGKLQRALAIYREALSSLPGLPQQREILyqriGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYgITLARNSSRASEA 807
Cdd:PRK15174 89 SSQPDAVLQVVNKLLAVNVCQPEDVLLV----ASVLLKSKQYATVADLAEQAWLAFSGNSQIFALH-LRTLVLMDKELQA 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 808 EMwFKRALKLAPEQASVYHHYAEFLSLQSRHHESAiyHRRAAELAPNDYTLVVAAATAMRLLDRKVDAEmwyrkaVALRP 887
Cdd:PRK15174 164 IS-LARTQAQEVPPRGDMIATCLSFLNKSRLPEDH--DLARALLPFFALERQESAGLAVDTLCAVGKYQ------EAIQT 234
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 19920486 888 GDA--HAHTNLGAILHLLG-----------RTNHAAASYKAALRLQPGD 923
Cdd:PRK15174 235 GESalARGLDGAALRRSLGlayyqsgrsreAKLQAAEHWRHALQFNSDN 283
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
602-634 |
9.33e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.81 E-value: 9.33e-03
10 20 30
....*....|....*....|....*....|...
gi 19920486 602 PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPN 634
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
674-786 |
9.57e-03 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 38.68 E-value: 9.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920486 674 LNLGISFIALGKRQQAIEILQAgsnldgaaVRDRTAHDQARSSAYLQLGALYVEQGKLQRALAIyreaLSSLPGLPQQRE 753
Cdd:COG2976 94 LLLAKAAVDAGDLDKAAAQLQW--------VLDNAKDPALKALARLRLARVLLAQKKYDEALAT----LDAVKPEAFAAL 161
|
90 100 110
....*....|....*....|....*....|...
gi 19920486 754 ILYQRiGDVLGRLQQWDEAERHHRAALELQPNQ 786
Cdd:COG2976 162 YAELR-GDILLAQGDKAEARAAYQKALAALPED 193
|
|
| |
