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Conserved domains on  [gi|19112527|ref|NP_595735|]
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PPR repeat-containing protein Ppr2 [Schizosaccharomyces pombe]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 12127860)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

CATH:  1.25.40.10
Gene Ontology:  GO:0003723
PubMed:  19004664|23635770|25882680|34065603|18031283|30809817
SCOP:  4001344

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 109-156 1.98e-16

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 72.78  E-value: 1.98e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 19112527   109 TVAYNLVLQYHLAKGHYNAAWSLYNDMKKRQQKPSDHTYSILLKGFCD 156
Cdd:pfam13041   3 VVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
 
Name Accession Description Interval E-value
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 109-156 1.98e-16

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 72.78  E-value: 1.98e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 19112527   109 TVAYNLVLQYHLAKGHYNAAWSLYNDMKKRQQKPSDHTYSILLKGFCD 156
Cdd:pfam13041   3 VVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
 
Name Accession Description Interval E-value
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 109-156 1.98e-16

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 72.78  E-value: 1.98e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 19112527   109 TVAYNLVLQYHLAKGHYNAAWSLYNDMKKRQQKPSDHTYSILLKGFCD 156
Cdd:pfam13041   3 VVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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