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Conserved domains on  [gi|19115554|ref|NP_594642|]
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protein Nod1 [Schizosaccharomyces pombe]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Nod1 pfam17114
Gef2-related medial cortical node protein Nod1; This is a small family of fungal proteins that ...
 59-203 1.31e-63

Gef2-related medial cortical node protein Nod1; This is a small family of fungal proteins that are involved in cytokinesis, the last stage of the cell-division cycle. Nod1 co-localizes with Gef2 - RhoGEF - in the contractile ring and its precursor cortical nodes. Nod1 and Gef2 interact through this C-terminal region of each, this interaction being important for their localization.


:

Pssm-ID: 374998  Cd Length: 145  Bit Score: 201.13  E-value: 1.31e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19115554    59 MVCLSTSIAENPYQSLSLESVPSKILFGSFLFYVKDRIPEKAGYIIEEQFCKRLQQIDYDAYSFSPKECN-EKLKNIFSE 137
Cdd:pfam17114   1 MDKLSEEILKEPKREALLQSLPPKIIFGSFLFYLKDFIHRKAGHLLPSKFCQRLENLDLDLNSKSLKERNvQQIKSLLQE 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19115554   138 FSQMKLKMLSVFFSIVQILLPKLS-GDYQEHVqfFASISAVVAPRGYVFEIYHAVEHLSLEAREVFQ 203
Cdd:pfam17114  81 LPQGSLKLLEVFFSIVSELLLRLPlGDQCEHV--FASIAAVLSPRMYVNKAYELVEFISYNSDELFK 145
 
Name Accession Description Interval E-value
Nod1 pfam17114
Gef2-related medial cortical node protein Nod1; This is a small family of fungal proteins that ...
 59-203 1.31e-63

Gef2-related medial cortical node protein Nod1; This is a small family of fungal proteins that are involved in cytokinesis, the last stage of the cell-division cycle. Nod1 co-localizes with Gef2 - RhoGEF - in the contractile ring and its precursor cortical nodes. Nod1 and Gef2 interact through this C-terminal region of each, this interaction being important for their localization.


Pssm-ID: 374998  Cd Length: 145  Bit Score: 201.13  E-value: 1.31e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19115554    59 MVCLSTSIAENPYQSLSLESVPSKILFGSFLFYVKDRIPEKAGYIIEEQFCKRLQQIDYDAYSFSPKECN-EKLKNIFSE 137
Cdd:pfam17114   1 MDKLSEEILKEPKREALLQSLPPKIIFGSFLFYLKDFIHRKAGHLLPSKFCQRLENLDLDLNSKSLKERNvQQIKSLLQE 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19115554   138 FSQMKLKMLSVFFSIVQILLPKLS-GDYQEHVqfFASISAVVAPRGYVFEIYHAVEHLSLEAREVFQ 203
Cdd:pfam17114  81 LPQGSLKLLEVFFSIVSELLLRLPlGDQCEHV--FASIAAVLSPRMYVNKAYELVEFISYNSDELFK 145
 
Name Accession Description Interval E-value
Nod1 pfam17114
Gef2-related medial cortical node protein Nod1; This is a small family of fungal proteins that ...
 59-203 1.31e-63

Gef2-related medial cortical node protein Nod1; This is a small family of fungal proteins that are involved in cytokinesis, the last stage of the cell-division cycle. Nod1 co-localizes with Gef2 - RhoGEF - in the contractile ring and its precursor cortical nodes. Nod1 and Gef2 interact through this C-terminal region of each, this interaction being important for their localization.


Pssm-ID: 374998  Cd Length: 145  Bit Score: 201.13  E-value: 1.31e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19115554    59 MVCLSTSIAENPYQSLSLESVPSKILFGSFLFYVKDRIPEKAGYIIEEQFCKRLQQIDYDAYSFSPKECN-EKLKNIFSE 137
Cdd:pfam17114   1 MDKLSEEILKEPKREALLQSLPPKIIFGSFLFYLKDFIHRKAGHLLPSKFCQRLENLDLDLNSKSLKERNvQQIKSLLQE 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19115554   138 FSQMKLKMLSVFFSIVQILLPKLS-GDYQEHVqfFASISAVVAPRGYVFEIYHAVEHLSLEAREVFQ 203
Cdd:pfam17114  81 LPQGSLKLLEVFFSIVSELLLRLPlGDQCEHV--FASIAAVLSPRMYVNKAYELVEFISYNSDELFK 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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