NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|18860525|ref|NP_573365|]
View 

mucin 18B, isoform A [Drosophila melanogaster]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
motB super family cl32828
flagellar motor protein MotB; Reviewed
 90-208 1.94e-05

flagellar motor protein MotB; Reviewed


The actual alignment was detected with superfamily member PRK12799:

Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 45.86  E-value: 1.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525   90 TIPPSNLDESTTEKPATEAPGTTEKVTTAAPGTTEKV-TTEAPGTTEKITTEAPGTTEKITTEAPGTTEKITTEAPGTTE 168
Cdd:PRK12799 302 AAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSAtTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMST 381

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 18860525  169 KITTEAPGTTEKPATDAPgTTEKPATDAPGTTEKSETTDA 208
Cdd:PRK12799 382 TETQQSSTGNITSTANGP-TTSLPAAPASNIPVSPTSRDA 420
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 26-72 3.30e-03

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


:

Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 35.08  E-value: 3.30e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 18860525    26 RSSGYFALVDNTPDFYACQStaygGYSLRFlRCPAGLVFSSSMAQCV 72
Cdd:pfam01607   4 KEDGYYADPGDCSKYYVCSN----GEAVEF-TCPNGLVFDPTLGICD 45
 
Name Accession Description Interval E-value
motB PRK12799
flagellar motor protein MotB; Reviewed
 90-208 1.94e-05

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 45.86  E-value: 1.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525   90 TIPPSNLDESTTEKPATEAPGTTEKVTTAAPGTTEKV-TTEAPGTTEKITTEAPGTTEKITTEAPGTTEKITTEAPGTTE 168
Cdd:PRK12799 302 AAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSAtTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMST 381

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 18860525  169 KITTEAPGTTEKPATDAPgTTEKPATDAPGTTEKSETTDA 208
Cdd:PRK12799 382 TETQQSSTGNITSTANGP-TTSLPAAPASNIPVSPTSRDA 420
growth_prot_Scy NF041483
polarized growth protein Scy;
65-234 2.15e-03

polarized growth protein Scy;


Pssm-ID: 469371 [Multi-domain]  Cd Length: 1293  Bit Score: 39.81  E-value: 2.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525    65 SSSMAQCVQ--SIAAFEARDDSN-------------IENPTIPPSNLDESTT---EKPATEAPGTTEKVTTAAPGTTEKV 126
Cdd:NF041483  883 SDTLASAEQdaARTRADAREDANrirsdaaaqadrlIGEATSEAERLTAEARaeaERLRDEARAEAERVRADAAAQAEQL 962

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525   127 TTEAPGTTEKITTEAPGT-------TEKITTEApgttEKITTEAPGTTEKITTEAPGTTEKPATDAPGTTEKPATDApgt 199
Cdd:NF041483  963 IAEATGEAERLRAEAAETvgsaqqhAERIRTEA----ERVKAEAAAEAERLRTEAREEADRTLDEARKDANKRRSEA--- 1035

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 18860525   200 tekSETTDAPGTTDKSDTDAPITDEPSTAETSTDE 234
Cdd:NF041483 1036 ---AEQADTLITEAAAEADQLTAKAQEEALRTTTE 1067
growth_prot_Scy NF041483
polarized growth protein Scy;
102-202 2.52e-03

polarized growth protein Scy;


Pssm-ID: 469371 [Multi-domain]  Cd Length: 1293  Bit Score: 39.42  E-value: 2.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525   102 EKPATEAPGTTEKVTTAAPGTTEKVTTEAPGT------------------TEKITTEAPGTTEKITTEAPGTTEKITTEA 163
Cdd:NF041483  854 ERTVSEAIAEAERLRSDASEYAQRVRTEASDTlasaeqdaartradaredANRIRSDAAAQADRLIGEATSEAERLTAEA 933

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 18860525   164 PGTTEKITTEAPGTTEKPATDAPGTTEKPATDAPGTTEK 202
Cdd:NF041483  934 RAEAERLRDEARAEAERVRADAAAQAEQLIAEATGEAER 972
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 26-72 3.30e-03

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 35.08  E-value: 3.30e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 18860525    26 RSSGYFALVDNTPDFYACQStaygGYSLRFlRCPAGLVFSSSMAQCV 72
Cdd:pfam01607   4 KEDGYYADPGDCSKYYVCSN----GEAVEF-TCPNGLVFDPTLGICD 45
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 89-235 3.47e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 38.98  E-value: 3.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525   89 PTIPPSNLDESTTEKPATEAPGTTEKVTTAAPGTTEKVTTEAPGTTEKITTEAPGTTEKITTEAPGTTEKITTEAPGTTE 168
Cdd:NF033839 374 PEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEV 453

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 18860525  169 KITTEAPGTTEKPATDAPGTTEKPATDAPGTTEKSETTD--APGTTDKSDTDAPITDEPSTAETSTDEP 235
Cdd:NF033839 454 KPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQADdkKPSTPNNLSKDKQPSNQASTNEKATNKP 522
 
Name Accession Description Interval E-value
motB PRK12799
flagellar motor protein MotB; Reviewed
 90-208 1.94e-05

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 45.86  E-value: 1.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525   90 TIPPSNLDESTTEKPATEAPGTTEKVTTAAPGTTEKV-TTEAPGTTEKITTEAPGTTEKITTEAPGTTEKITTEAPGTTE 168
Cdd:PRK12799 302 AAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSAtTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMST 381

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 18860525  169 KITTEAPGTTEKPATDAPgTTEKPATDAPGTTEKSETTDA 208
Cdd:PRK12799 382 TETQQSSTGNITSTANGP-TTSLPAAPASNIPVSPTSRDA 420
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 93-233 2.65e-05

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 45.35  E-value: 2.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525   93 PSNLDESTTEKPATEAPGTTEKVTTAAPGTTEKVTTEAPGTTEKITTEAPGTTEKITTEAPGTTEK-----ITTEAPGTT 167
Cdd:PRK13108 300 PAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEEtseadIEREQPGDL 379

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18860525  168 EKITTEAPGTTEKPATDAPGTTEKPATDAPGTTEKSETTDAPGTTDKSDTDAPITDEPSTAETSTD 233
Cdd:PRK13108 380 AGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAEPD 445
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
61-209 2.15e-04

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 42.42  E-value: 2.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525   61 GLVFSSSMAQCVQSIAAFEARDDSNIENPTIPPSNL---DESTTEKPATEAPGTTEKVTTAAPGTTEKVTTEAPGTTEKI 137
Cdd:PRK13335  14 GLLTTGAITVTTQSVKAEKIQSTKVDKVPTLKAERLamiNITAGANSATTQAANTRQERTPKLEKAPNTNEEKTSASKIE 93

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 18860525  138 TTEAPGTTEKITTEAPGTTEKiTTEAPGTTEKITTEAPGTTEKPATDAPGTTEKPATDAPG--TTEKSETTDAP 209
Cdd:PRK13335  94 KISQPKQEEQKSLNISATPAP-KQEQSQTTTESTTPKTKVTTPPSTNTPQPMQSTKSDTPQspTIKQAQTDMTP 166
growth_prot_Scy NF041483
polarized growth protein Scy;
65-234 2.15e-03

polarized growth protein Scy;


Pssm-ID: 469371 [Multi-domain]  Cd Length: 1293  Bit Score: 39.81  E-value: 2.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525    65 SSSMAQCVQ--SIAAFEARDDSN-------------IENPTIPPSNLDESTT---EKPATEAPGTTEKVTTAAPGTTEKV 126
Cdd:NF041483  883 SDTLASAEQdaARTRADAREDANrirsdaaaqadrlIGEATSEAERLTAEARaeaERLRDEARAEAERVRADAAAQAEQL 962

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525   127 TTEAPGTTEKITTEAPGT-------TEKITTEApgttEKITTEAPGTTEKITTEAPGTTEKPATDAPGTTEKPATDApgt 199
Cdd:NF041483  963 IAEATGEAERLRAEAAETvgsaqqhAERIRTEA----ERVKAEAAAEAERLRTEAREEADRTLDEARKDANKRRSEA--- 1035

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 18860525   200 tekSETTDAPGTTDKSDTDAPITDEPSTAETSTDE 234
Cdd:NF041483 1036 ---AEQADTLITEAAAEADQLTAKAQEEALRTTTE 1067
growth_prot_Scy NF041483
polarized growth protein Scy;
102-202 2.52e-03

polarized growth protein Scy;


Pssm-ID: 469371 [Multi-domain]  Cd Length: 1293  Bit Score: 39.42  E-value: 2.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525   102 EKPATEAPGTTEKVTTAAPGTTEKVTTEAPGT------------------TEKITTEAPGTTEKITTEAPGTTEKITTEA 163
Cdd:NF041483  854 ERTVSEAIAEAERLRSDASEYAQRVRTEASDTlasaeqdaartradaredANRIRSDAAAQADRLIGEATSEAERLTAEA 933

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 18860525   164 PGTTEKITTEAPGTTEKPATDAPGTTEKPATDAPGTTEK 202
Cdd:NF041483  934 RAEAERLRDEARAEAERVRADAAAQAEQLIAEATGEAER 972
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 97-236 2.77e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 39.19  E-value: 2.77e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525   97 DESTTEKPATEAPGTTEKVTTAAPGTTEKVTTEAPGTTEKITTEAPGTTEKITTEAPGTTEKITTEAPGTTEK-----IT 171
Cdd:PRK13108 293 DEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEEtseadIE 372

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18860525  172 TEAPGTTEKPATDAPGTTEKPATDAPGTTEKSETTDAPGTtdksdtdapitdEPSTAETSTDEPN 236
Cdd:PRK13108 373 REQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDET------------EPEVPEKAAPIPD 425
CBM_14 pfam01607
Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is ...
 26-72 3.30e-03

Chitin binding Peritrophin-A domain; This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains.


Pssm-ID: 426342 [Multi-domain]  Cd Length: 53  Bit Score: 35.08  E-value: 3.30e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 18860525    26 RSSGYFALVDNTPDFYACQStaygGYSLRFlRCPAGLVFSSSMAQCV 72
Cdd:pfam01607   4 KEDGYYADPGDCSKYYVCSN----GEAVEF-TCPNGLVFDPTLGICD 45
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 89-235 3.47e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 38.98  E-value: 3.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525   89 PTIPPSNLDESTTEKPATEAPGTTEKVTTAAPGTTEKVTTEAPGTTEKITTEAPGTTEKITTEAPGTTEKITTEAPGTTE 168
Cdd:NF033839 374 PEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEV 453

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 18860525  169 KITTEAPGTTEKPATDAPGTTEKPATDAPGTTEKSETTD--APGTTDKSDTDAPITDEPSTAETSTDEP 235
Cdd:NF033839 454 KPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQADdkKPSTPNNLSKDKQPSNQASTNEKATNKP 522
rne PRK10811
ribonuclease E; Reviewed
 69-225 5.03e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 38.48  E-value: 5.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525    69 AQCVQSIAAFEARDDSNIENPTIPPSNLDESTTEKPATEAPGTTEKVTTAAPGTTEKVTTEAPGT---------TEKITT 139
Cdd:PRK10811  861 AEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTeqpqvitesDVAVAQ 940

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525   140 EAPGTTEKITTEAPGTTEkiTTEAPGTTEKITTEAPGTTEKPATDAPGTTEKPATDAPGTTEKSETTDAPGTTDKSDTDA 219
Cdd:PRK10811  941 EVAEHAEPVVEPQDETAD--IEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATA 1018


                  ....*.
gi 18860525   220 PITDEP 225
Cdd:PRK10811 1019 PMTRAP 1024
PHA03255 PHA03255
BDLF3; Provisional
 100-206 5.23e-03

BDLF3; Provisional


Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 37.58  E-value: 5.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525  100 TTEKPATEAPGTTEKVTTAAPGTTEKVTTEAPGTTEKITTEAPGTTEKITTEAPGTTEKITTEAPGTTEKITTEAPGTTE 179
Cdd:PHA03255  58 STTLTTTSAPITTTAILSTNTTTVTSTGTTVTPVPTTSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRSSSTTS 137

                         90       100
                 ....*....|....*....|....*..
gi 18860525  180 KPATDAPGTTEKPATDAPGTTEKSETT 206
Cdd:PHA03255 138 ATTRITNATTLAPTLSSKGTSNATKTT 164
motB PRK12799
flagellar motor protein MotB; Reviewed
 74-222 8.86e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 37.39  E-value: 8.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525   74 SIAAFEARDDSNIENPTIPPSNLD----------ESTTEKPATEAPGTTEKVTTAAPgttekvTTEAPGTTEKITTEAPG 143
Cdd:PRK12799 260 SILVLNKQSQHDIEHENLDNRALDiekatglkqiDTHGTVPVAAVTPSSAVTQSSAI------TPSSAAIPSPAVIPSSV 333

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525  144 TTEKI-TTEAPGTTEKITTEAPGTTEkitteAPGTTEKPATDAPGTTEKP---------ATDAPGTTEKSETTDAPGTTD 213
Cdd:PRK12799 334 TTQSAtTTQASAVALSSAGVLPSDVT-----LPGTVALPAAEPVNMQPQPmsttetqqsSTGNITSTANGPTTSLPAAPA 408


                 ....*....
gi 18860525  214 KSDTDAPIT 222
Cdd:PRK12799 409 SNIPVSPTS 417
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 142-225 8.94e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 37.95  E-value: 8.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18860525   142 PGTTEKITTEAPGTTEKITTEAPGTTEKitTEAPGTTEKPATDAPGTTEKPATDAPGTTEKSETTDAPGTTDKSDTDAPI 221
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAK--APAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115


                  ....
gi 18860525   222 TDEP 225
Cdd:PRK12270  116 EVTP 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH