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Conserved domains on  [gi|24641993|ref|NP_572966|]
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sobremesa, isoform A [Drosophila melanogaster]

Protein Classification

amino acid permease( domain architecture ID 1000062)

amino acid permease facilitates the transport of amino acids, similar to solute carrier family 7 (SLC7) members

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
2A0308 super family cl30119
L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and ...
 44-523 2.57e-143

L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00911:

Pssm-ID: 273332 [Multi-domain]  Cd Length: 501  Bit Score: 422.23  E-value: 2.57e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993    44 PETDSSGTGRMrkpLERNGSTQNHVVHLERRLGLFSGVALIVGTMIGSGIFVSPSGLLVRTGSVGVSFIIWLACGVLSLL 123
Cdd:TIGR00911  16 YQFSSSGRKKS---VSASTVDGGEAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIV 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   124 GALAYAELGTMNTSSGAEWAYFMDAYGPAPAFLFSWVSTLVLKPSQMAIICLSFAQYAVEAFVTECDPPRGVVKMVALVA 203
Cdd:TIGR00911  93 GALVYAELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLC 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   204 IVMILFVNCYSVNLGMAVQNVFTAAKLVAVVVVICGGAWKLMQGNTQHLS--NAFNGPMPNVGAIATAFYTGLWAYDGWN 281
Cdd:TIGR00911 173 VLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNpkNAFEGTETSAGGIVLAFYSGIWAYGGWN 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   282 NLNYVTEEIKNPSKNLPRSIIIGIPLVTLCYALINISYLAAMSPQEMIESEAVAVTFGNRILGALAWLMPLSVTISTFGS 361
Cdd:TIGR00911 253 YLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGS 332

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   362 ANGTLFAAGRLCFAASREGHLLDILSYVHVRRLTPAPGLIFHSLIASAMVLHGTIDSLIDFFSFTAWIFYGGAMLALIVM 441
Cdd:TIGR00911 333 VNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWL 412

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   442 RYTKPNYPRPYKVPIIIPVVVLVISVYLVAAPIFETPRVEYLYaLLFIFAGLIFYVPFVKLGMTPRFMN----KVTLFFQ 517
Cdd:TIGR00911 413 RYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVG-FIIMLTGVPVYFFGVWWQNKPKWFRylivSKTVLLQ 491


                  ....*.
gi 24641993   518 LLLEVV 523
Cdd:TIGR00911 492 KVLEVV 497
 
Name Accession Description Interval E-value
2A0308 TIGR00911
L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and ...
 44-523 2.57e-143

L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273332 [Multi-domain]  Cd Length: 501  Bit Score: 422.23  E-value: 2.57e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993    44 PETDSSGTGRMrkpLERNGSTQNHVVHLERRLGLFSGVALIVGTMIGSGIFVSPSGLLVRTGSVGVSFIIWLACGVLSLL 123
Cdd:TIGR00911  16 YQFSSSGRKKS---VSASTVDGGEAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIV 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   124 GALAYAELGTMNTSSGAEWAYFMDAYGPAPAFLFSWVSTLVLKPSQMAIICLSFAQYAVEAFVTECDPPRGVVKMVALVA 203
Cdd:TIGR00911  93 GALVYAELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLC 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   204 IVMILFVNCYSVNLGMAVQNVFTAAKLVAVVVVICGGAWKLMQGNTQHLS--NAFNGPMPNVGAIATAFYTGLWAYDGWN 281
Cdd:TIGR00911 173 VLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNpkNAFEGTETSAGGIVLAFYSGIWAYGGWN 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   282 NLNYVTEEIKNPSKNLPRSIIIGIPLVTLCYALINISYLAAMSPQEMIESEAVAVTFGNRILGALAWLMPLSVTISTFGS 361
Cdd:TIGR00911 253 YLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGS 332

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   362 ANGTLFAAGRLCFAASREGHLLDILSYVHVRRLTPAPGLIFHSLIASAMVLHGTIDSLIDFFSFTAWIFYGGAMLALIVM 441
Cdd:TIGR00911 333 VNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWL 412

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   442 RYTKPNYPRPYKVPIIIPVVVLVISVYLVAAPIFETPRVEYLYaLLFIFAGLIFYVPFVKLGMTPRFMN----KVTLFFQ 517
Cdd:TIGR00911 413 RYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVG-FIIMLTGVPVYFFGVWWQNKPKWFRylivSKTVLLQ 491


                  ....*.
gi 24641993   518 LLLEVV 523
Cdd:TIGR00911 492 KVLEVV 497
PotE COG0531
Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];
70-497 6.07e-67

Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];


Pssm-ID: 440297 [Multi-domain]  Cd Length: 438  Bit Score: 222.85  E-value: 6.07e-67
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993  70 HLERRLGLFSGVALIVGTMIGSGIFVSPSGLLVRTGsvGVSFIIWLACGVLSLLGALAYAELGTMNTSSGAEWAYFMDAY 149
Cdd:COG0531   8 ELKRKLGLFDLVALGVGAIIGAGIFVLPGLAAGLAG--PAAILAWLIAGLLALLVALSYAELASAFPRAGGAYTYARRAL 85

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993 150 GPAPAFLFSWVSTLVLKPSqMAIICLSFAQYAVEAFvtecdpPRGVVKMVALVAIVMILFVNCYSVNLGMAVQNVFTAAK 229
Cdd:COG0531  86 GPLLGFLAGWALLLSYVLA-VAAVAVAFGGYLSSLF------PAGGSVLIALVLILLLTLLNLRGVKESAKVNNILTVLK 158

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993 230 LVAVVVVICGGAWKLMQGNTQhlsnAFNGPMPNVGAIATAFYTGLWAYDGWNNLNYVTEEIKNPSKNLPRSIIIGIPLVT 309
Cdd:COG0531 159 LLVLLLFIVVGLFAFDPANFT----PFLPAGGGLSGVLAALALAFFAFTGFEAIANLAEEAKNPKRNIPRAIILSLLIVG 234

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993 310 LCYALINISYLAAMSPQEMIESEAVAVTFGNRILG-ALAWLMPLSVTISTFGSANGTLFAAGRLCFAASREGHLLDILSY 388
Cdd:COG0531 235 VLYILVSLALTGVVPYDELAASGAPLADAAEAVFGpWGAILIALGALLSLLGALNASILGASRLLYAMARDGLLPKVFAK 314

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993 389 VHVRRLTPAPGLIFHSLIASAMVL--HGTIDSLIDFFSFTAWIFYGGAMLALIVMRYTKPNYPRPYKVPIIIPVVVLVIs 466
Cdd:COG0531 315 VHPRFGTPVNAILLTGVIALLLLLlgAASFTALASLASVGVLLAYLLVALAVIVLRRRRPDLPRPFRVPLPLIPILGIL- 393

                       410       420       430
                ....*....|....*....|....*....|.
gi 24641993 467 vyLVAAPIFETPRVEYLYALLFIFAGLIFYV 497
Cdd:COG0531 394 --LCLFLLYLLGPGALLIGLVLLAIGLLLYL 422
AA_permease_2 pfam13520
Amino acid permease;
75-453 3.00e-36

Amino acid permease;


Pssm-ID: 404414 [Multi-domain]  Cd Length: 427  Bit Score: 139.75  E-value: 3.00e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993    75 LGLFSGVALIVGTMIGSGIFVSPSgllvrTGSVGVSFIIW--LACGVLSLLGALAYAELGTMNTSSGAEWAYFMDAYGPA 152
Cdd:pfam13520   1 LGLLSAFALVIGSVIGSGIFVAPL-----VASGGPALIVWgwIAAIIFSLAVGLVYAELSSALPRSGGIYVYLENAFGKF 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   153 PAFLFSWVSTLVLKPSqMAIICLSFAQYAVEAFVTECDPPRGVVKMVALVAIVMILFVNCYSVNLGMAVQNV-FTAAKLV 231
Cdd:pfam13520  76 VAFLAGWSNWFAYVLG-LASSASVAASYLLSALGPDLVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNIlGILKLLL 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   232 AVVVVICGGAWKLMQGNTQHLSNAFNGPMPNVGA-IATAFYTGLWAYDGWNNLNYVTEEIKNpsKNLPRSIIIGIPLVTL 310
Cdd:pfam13520 155 PLILIIILGLVTADGGGFNLLSGEWHTFFPDGWPgVFAGFLGVLWSFTGFESAANVSEEVKK--RNVPKAIFIGVIIVGV 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   311 CYALINISYLAAMSPQEMIESE----AVAVTFGNRILGALAWLMPLSVTISTFGSANGTLFAAGRLCFAASREGHLLDIL 386
Cdd:pfam13520 233 LYILVNIAFFGVVPDDEIALSSglgqVAALLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSR 312

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24641993   387 SYVHVRRL-TPAPGLIFHSLIASAMVL-----HGTIDSLIDFFSFTAWIFYGGAMLALIVMRYTKPNYPRPYK 453
Cdd:pfam13520 313 FFAKVNKFgSPIRAIILTAILSLILLLlfllsPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPDLGRIPG 385
frlA PRK11357
amino acid permease;
71-427 1.42e-30

amino acid permease;


Pssm-ID: 183096 [Multi-domain]  Cd Length: 445  Bit Score: 123.81  E-value: 1.42e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   71 LERRLGLFSGVALIVGTMIGSGIFVSPSGLLVRTGSVGVSFIIWLACGVLSLLGALAYAELGTMNTSSGAEWAYFMDAYG 150
Cdd:PRK11357   6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGS 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993  151 PAPAFLFSWVSTLVLKPSQMAIICLSFAQYAveAFVTECDPPrgVVKMVALVAIVMILFVNCYSVNLGMAVQNVFTAAKL 230
Cdd:PRK11357  86 RPLAFLSGWASFWANDAPSLSIMALAIVSNL--GFLTPIDPL--LGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKI 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993  231 VAVVVVICGGAWKLMQGNTQHLSNAFNGPMPNVGAIATAFYTGLWAYDGWNNLNYVTEEIKNPSKNLPRSIIIGIPLVTL 310
Cdd:PRK11357 162 IPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLV 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993  311 CYALINISYLAAMSPQEMIESE---AVAVTFGNRILGALAWLMPLSVTISTFGSANGTLFAAGRLCFAASREGHLLDILS 387
Cdd:PRK11357 242 LYTLLALVISGLMPFDKLANSEtpiSDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFG 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 24641993  388 YVHVRRLTPAPGLIFHSLIASAMVLHGTIDSLIDFFSFTA 427
Cdd:PRK11357 322 HVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVM 361
 
Name Accession Description Interval E-value
2A0308 TIGR00911
L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and ...
 44-523 2.57e-143

L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273332 [Multi-domain]  Cd Length: 501  Bit Score: 422.23  E-value: 2.57e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993    44 PETDSSGTGRMrkpLERNGSTQNHVVHLERRLGLFSGVALIVGTMIGSGIFVSPSGLLVRTGSVGVSFIIWLACGVLSLL 123
Cdd:TIGR00911  16 YQFSSSGRKKS---VSASTVDGGEAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIV 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   124 GALAYAELGTMNTSSGAEWAYFMDAYGPAPAFLFSWVSTLVLKPSQMAIICLSFAQYAVEAFVTECDPPRGVVKMVALVA 203
Cdd:TIGR00911  93 GALVYAELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLC 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   204 IVMILFVNCYSVNLGMAVQNVFTAAKLVAVVVVICGGAWKLMQGNTQHLS--NAFNGPMPNVGAIATAFYTGLWAYDGWN 281
Cdd:TIGR00911 173 VLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNpkNAFEGTETSAGGIVLAFYSGIWAYGGWN 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   282 NLNYVTEEIKNPSKNLPRSIIIGIPLVTLCYALINISYLAAMSPQEMIESEAVAVTFGNRILGALAWLMPLSVTISTFGS 361
Cdd:TIGR00911 253 YLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGS 332

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   362 ANGTLFAAGRLCFAASREGHLLDILSYVHVRRLTPAPGLIFHSLIASAMVLHGTIDSLIDFFSFTAWIFYGGAMLALIVM 441
Cdd:TIGR00911 333 VNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWL 412

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   442 RYTKPNYPRPYKVPIIIPVVVLVISVYLVAAPIFETPRVEYLYaLLFIFAGLIFYVPFVKLGMTPRFMN----KVTLFFQ 517
Cdd:TIGR00911 413 RYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVG-FIIMLTGVPVYFFGVWWQNKPKWFRylivSKTVLLQ 491


                  ....*.
gi 24641993   518 LLLEVV 523
Cdd:TIGR00911 492 KVLEVV 497
PotE COG0531
Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];
70-497 6.07e-67

Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];


Pssm-ID: 440297 [Multi-domain]  Cd Length: 438  Bit Score: 222.85  E-value: 6.07e-67
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993  70 HLERRLGLFSGVALIVGTMIGSGIFVSPSGLLVRTGsvGVSFIIWLACGVLSLLGALAYAELGTMNTSSGAEWAYFMDAY 149
Cdd:COG0531   8 ELKRKLGLFDLVALGVGAIIGAGIFVLPGLAAGLAG--PAAILAWLIAGLLALLVALSYAELASAFPRAGGAYTYARRAL 85

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993 150 GPAPAFLFSWVSTLVLKPSqMAIICLSFAQYAVEAFvtecdpPRGVVKMVALVAIVMILFVNCYSVNLGMAVQNVFTAAK 229
Cdd:COG0531  86 GPLLGFLAGWALLLSYVLA-VAAVAVAFGGYLSSLF------PAGGSVLIALVLILLLTLLNLRGVKESAKVNNILTVLK 158

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993 230 LVAVVVVICGGAWKLMQGNTQhlsnAFNGPMPNVGAIATAFYTGLWAYDGWNNLNYVTEEIKNPSKNLPRSIIIGIPLVT 309
Cdd:COG0531 159 LLVLLLFIVVGLFAFDPANFT----PFLPAGGGLSGVLAALALAFFAFTGFEAIANLAEEAKNPKRNIPRAIILSLLIVG 234

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993 310 LCYALINISYLAAMSPQEMIESEAVAVTFGNRILG-ALAWLMPLSVTISTFGSANGTLFAAGRLCFAASREGHLLDILSY 388
Cdd:COG0531 235 VLYILVSLALTGVVPYDELAASGAPLADAAEAVFGpWGAILIALGALLSLLGALNASILGASRLLYAMARDGLLPKVFAK 314

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993 389 VHVRRLTPAPGLIFHSLIASAMVL--HGTIDSLIDFFSFTAWIFYGGAMLALIVMRYTKPNYPRPYKVPIIIPVVVLVIs 466
Cdd:COG0531 315 VHPRFGTPVNAILLTGVIALLLLLlgAASFTALASLASVGVLLAYLLVALAVIVLRRRRPDLPRPFRVPLPLIPILGIL- 393

                       410       420       430
                ....*....|....*....|....*....|.
gi 24641993 467 vyLVAAPIFETPRVEYLYALLFIFAGLIFYV 497
Cdd:COG0531 394 --LCLFLLYLLGPGALLIGLVLLAIGLLLYL 422
AA_permease_2 pfam13520
Amino acid permease;
75-453 3.00e-36

Amino acid permease;


Pssm-ID: 404414 [Multi-domain]  Cd Length: 427  Bit Score: 139.75  E-value: 3.00e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993    75 LGLFSGVALIVGTMIGSGIFVSPSgllvrTGSVGVSFIIW--LACGVLSLLGALAYAELGTMNTSSGAEWAYFMDAYGPA 152
Cdd:pfam13520   1 LGLLSAFALVIGSVIGSGIFVAPL-----VASGGPALIVWgwIAAIIFSLAVGLVYAELSSALPRSGGIYVYLENAFGKF 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   153 PAFLFSWVSTLVLKPSqMAIICLSFAQYAVEAFVTECDPPRGVVKMVALVAIVMILFVNCYSVNLGMAVQNV-FTAAKLV 231
Cdd:pfam13520  76 VAFLAGWSNWFAYVLG-LASSASVAASYLLSALGPDLVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNIlGILKLLL 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   232 AVVVVICGGAWKLMQGNTQHLSNAFNGPMPNVGA-IATAFYTGLWAYDGWNNLNYVTEEIKNpsKNLPRSIIIGIPLVTL 310
Cdd:pfam13520 155 PLILIIILGLVTADGGGFNLLSGEWHTFFPDGWPgVFAGFLGVLWSFTGFESAANVSEEVKK--RNVPKAIFIGVIIVGV 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   311 CYALINISYLAAMSPQEMIESE----AVAVTFGNRILGALAWLMPLSVTISTFGSANGTLFAAGRLCFAASREGHLLDIL 386
Cdd:pfam13520 233 LYILVNIAFFGVVPDDEIALSSglgqVAALLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSR 312

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24641993   387 SYVHVRRL-TPAPGLIFHSLIASAMVL-----HGTIDSLIDFFSFTAWIFYGGAMLALIVMRYTKPNYPRPYK 453
Cdd:pfam13520 313 FFAKVNKFgSPIRAIILTAILSLILLLlfllsPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPDLGRIPG 385
frlA PRK11357
amino acid permease;
71-427 1.42e-30

amino acid permease;


Pssm-ID: 183096 [Multi-domain]  Cd Length: 445  Bit Score: 123.81  E-value: 1.42e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   71 LERRLGLFSGVALIVGTMIGSGIFVSPSGLLVRTGSVGVSFIIWLACGVLSLLGALAYAELGTMNTSSGAEWAYFMDAYG 150
Cdd:PRK11357   6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGS 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993  151 PAPAFLFSWVSTLVLKPSQMAIICLSFAQYAveAFVTECDPPrgVVKMVALVAIVMILFVNCYSVNLGMAVQNVFTAAKL 230
Cdd:PRK11357  86 RPLAFLSGWASFWANDAPSLSIMALAIVSNL--GFLTPIDPL--LGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKI 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993  231 VAVVVVICGGAWKLMQGNTQHLSNAFNGPMPNVGAIATAFYTGLWAYDGWNNLNYVTEEIKNPSKNLPRSIIIGIPLVTL 310
Cdd:PRK11357 162 IPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLV 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993  311 CYALINISYLAAMSPQEMIESE---AVAVTFGNRILGALAWLMPLSVTISTFGSANGTLFAAGRLCFAASREGHLLDILS 387
Cdd:PRK11357 242 LYTLLALVISGLMPFDKLANSEtpiSDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFG 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 24641993  388 YVHVRRLTPAPGLIFHSLIASAMVLHGTIDSLIDFFSFTA 427
Cdd:PRK11357 322 HVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVM 361
2A0303 TIGR00906
cationic amino acid transport permease; [Transport and binding proteins, Amino acids, peptides ...
 71-443 2.92e-13

cationic amino acid transport permease; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273330 [Multi-domain]  Cd Length: 557  Bit Score: 72.16  E-value: 2.92e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993    71 LERRLGLFSGVALIVGTMIGSGIFVSpSGLLVRTGS---VGVSFIIwlaCGVLSLLGALAYAELGTMNTSSGAEWAYFMD 147
Cdd:TIGR00906  26 MKRCLTTWDLMALGIGSTIGAGIYVL-TGEVARNDSgpaIVLSFLI---SGLAAVLSGFCYAEFGARVPKAGSAYLYSYV 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   148 AYGPAPAFLFSWVSTL--VLKPSQMA---------IICLSFAQYAVEAFVTECDPPRGVVKMVALVAIVMILFVNCYSVN 216
Cdd:TIGR00906 102 TVGELWAFITGWNLILeyVIGTAAVArswsayfdeLLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVK 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   217 LGMAVQNVFTAAKLVAVV-VVICG---GAWKLMQGNTQHLSNAFNgPMPNVGAIATAfYTGLWAYDGWNNLNYVTEEIKN 292
Cdd:TIGR00906 182 ESAWVNKIFTAINILVLLfVIIAGftkADVANWSITEEKGAGGFM-PYGFTGVLSGA-ATCFFAFIGFDAIATTGEEVKN 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   293 PSKNLPRSIIIGIPLVTLCYALINISyLAAMSPQEMIESEA-VAVTFGNRILGALAWLMPLSVTISTFGSANGTLFAAGR 371
Cdd:TIGR00906 260 PQRAIPIGIVTSLLVCFVAYFLMSAA-LTLMMPYYLLDPDApFPVAFEYVGWDPAKYIVAVGALCGMSTSLLGGMFPLPR 338

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24641993   372 LCFAASREGHLLDILSYVHVRRLTPAPGLIFHSLIASAMVLHGTIDSLIDFFSFTAWIFYGGAMLALIVMRY 443
Cdd:TIGR00906 339 VIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRY 410
AA_permease pfam00324
Amino acid permease;
85-450 5.40e-13

Amino acid permease;


Pssm-ID: 366028 [Multi-domain]  Cd Length: 467  Bit Score: 71.20  E-value: 5.40e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993    85 VGTMIGSGIFVSpSGLLVRTGSVGVSFIIWLACGVLSLLGALAYAELGTMNTSSGAEWAYFMDAYGPAPAF------LFS 158
Cdd:pfam00324   7 LGGVIGTGLFVG-SGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASRFLGPSLGFatgwnyWLS 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   159 WVSTLVLKPSqMAIICLSFAQYAVEAFVTEcdpprgvvkMVALVAIVMILFVNCYSVNLGMAVQNVFTAAKLVAVVVVIC 238
Cdd:pfam00324  86 WITVLALELT-AASILIQFWELVPDIPYLW---------VWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFII 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   239 GGAWKLMQGNTQH-------LSNAFNGPMPN--VGAIATAFYTGLWAYDGWNNLNYVTEEIKNPSKNLPRSIIIGIPLVT 309
Cdd:pfam00324 156 VGIILLSGGNPNDgaifrylGDNGGKNNFPPgfGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRIT 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   310 LCYALINISYLAAMSP-------QEMIESEAVAVTFGNRILGALAWLMPLSVTISTFGSANGTLFAAGRLCFAASREGHL 382
Cdd:pfam00324 236 IFYILSLLAIGLLVPWndpgllnDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLARDGLA 315

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24641993   383 LDILSYVHvRRLTPAPGLIFHSLIASAMVLHG------TIDSLIDFFSFTAWIFYGGAMLALIVMRYTKPNYPR 450
Cdd:pfam00324 316 PKFLKKVD-KRGVPLRAILVSMVISLLALLLAslnpaiVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGR 388
PRK10644 PRK10644
arginine/agmatine antiporter;
73-412 1.46e-12

arginine/agmatine antiporter;


Pssm-ID: 182613 [Multi-domain]  Cd Length: 445  Bit Score: 69.43  E-value: 1.46e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   73 RRLGLFSGVALIVGTMIGSGIFVSPSGLlVRTGsvGVSFIIWLACGVLSLLGALAYAELGTMNTSSGAEWAYFMDAYGPA 152
Cdd:PRK10644   8 HKVGLIPVTLMVAGNIMGSGVFLLPANL-ASTG--GIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPF 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993  153 PAF---LFSWVSTlVLKPSQMAIICLSFAQYaveAFVTECDPprgVVKMVALVAIVMIL-FVNCYSVNLGMAVQNVFTAA 228
Cdd:PRK10644  85 LGYqtnVLYWLAC-WIGNIAMVVIGVGYLSY---FFPILKDP---LVLTITCVVVLWIFvLLNIVGPKMITRVQAVATVL 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993  229 KLVAVVVVICGGaWKLMQGNTQHLSNAFNGpMPNVGAIATAFYTGLWAYDGWNNLNYVTEEIKNPSKNLPRSIIIGIPLV 308
Cdd:PRK10644 158 ALIPIVGIAVFG-WFWFRGETYMAAWNVSG-LGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIA 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993  309 TLCYALINISYLAAMSPQEMIESEAVAVTFGNRILGALAW-LMPLSVTISTFGSANGTLFAAGRLCFAASREGHLLDILS 387
Cdd:PRK10644 236 AVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGaIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFA 315

                        330       340
                 ....*....|....*....|....*
gi 24641993  388 YVHvRRLTPAPGLIFHSLIASAMVL 412
Cdd:PRK10644 316 RVN-KAGTPVAGLLIVGVLMTIFQL 339
2A0302 TIGR00905
transporter, basic amino acid/polyamine antiporter (APA) family; This family includes several ...
 73-412 1.06e-11

transporter, basic amino acid/polyamine antiporter (APA) family; This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 129983  Cd Length: 473  Bit Score: 67.00  E-value: 1.06e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993    73 RRLGLFSGVALIVGTMIGSGIFVSPSGlLVRTGSVGVSFIIWLACGVLSLLGALAYAELGTMNTS-SGAEWAYFMDAYGP 151
Cdd:TIGR00905   7 KKLGLFALTALVIGSMIGSGIFSLPQN-LASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPElDGGIYAYAREGFGP 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   152 APAFLFSWVS--TLVLKPSQMAIICLSFAQYAVEAFVTEcDPprgvvkMVALVAIVMILFVNCYSVNLGM---AVQNVFT 226
Cdd:TIGR00905  86 YIGFMSGWGYwlSAWIGNVAYAVLLFSALGYFFPLFGSG-NP------VPSILGASVLLWVFTFLVLRGVrqaAFINTIT 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   227 AAKLVAVVVVICGGAWKLMQGNTqhLSNAFNGPM-PNVGAIATA-----FYTgLWAYDGWNNLNYVTEEIKNPSkNLPRS 300
Cdd:TIGR00905 159 TIAKLIPLFLFIIIGWFWFKLDL--FTADFWGHDvPSLGSVFSQvkntmLVT-LWVFIGIEGAVVSSGRAKNKS-DVGKA 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   301 IIIGIPLVTLCYALINISYLAAMSPQEMIESEAVA-VTFGNRILGAL-AWLMPLSVTISTFGSANGTLFAAGRLCFAASR 378
Cdd:TIGR00905 235 TVLGTLGALVIYILITLLSLGVLPQQELANLPNPSmAAVLEMIVGKWgAVLISLGLIISVLGSLLSWTMLAAEVPFSAAK 314

                         330       340       350
                  ....*....|....*....|....*....|....
gi 24641993   379 EGHLLDILSYVHVRRlTPAPGLIFHSLIASAMVL 412
Cdd:TIGR00905 315 DGLFPKIFGRVNKNG-APSVALLLTNILIQLFLL 347
potE PRK10655
putrescine transporter; Provisional
 73-443 1.62e-07

putrescine transporter; Provisional


Pssm-ID: 182622  Cd Length: 438  Bit Score: 53.88  E-value: 1.62e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   73 RRLGLFSGVALIVGTMIGSGIFVSPSGLlvrtGSVG-VSFIIWLACGVLSLLGALAYAELGTMNTSSGAEWAYFMDAYGP 151
Cdd:PRK10655   6 NKMGVVQLTILTAVNMMGSGIIMLPTKL----AQVGtISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993  152 APAFLFSWVSTLVLKPSQMAiICLSFAQYAVEAFVTECDPprgvvKMVALVAIVMILFvnCYSVNLGMA----VQNVFTA 227
Cdd:PRK10655  82 SGNFMANYTYGVSLLIANVA-IAISAVGYGTELFGATLSP-----VQICLATIGVLWL--CTVANFGGAritgQISSVTV 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993  228 AKLVAVVVVICGGAWKLMQGNTqhLSNAFNgP--MPNVGAIATAFYTGLWAYDGWNNLNYVTEEIKNPSKNLPRSIIIGi 305
Cdd:PRK10655 154 WGVIIPVVGLSIIGWFWFSPSL--YVAAWN-PhhLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGG- 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993  306 plvTLCYALINI---SYLAAMSPQ-EMIESEA----VAVTFGNRILGALawLMPLSVtISTFGSANGTLFAAGRLCFAAS 377
Cdd:PRK10655 230 ---TLGAAVIYIvstNVIAGIVPNmELANSTApfglAFAQMFNPTVGKI--VMALMV-MSCCGSLLGWQFTIAQVFKSSA 303

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24641993  378 REGHLLDILSYVhVRRLTPAPGLIFHSLIASAMVLHgTI--------DSLIDFFSFTAWIFYGGAMLALIVMRY 443
Cdd:PRK10655 304 DEGYFPKIFSRV-TKVDAPVQGMLIIVVIQSLLSLM-TIspslnsqfNVLVNLAVVTNIIPYILSMAALVIIQK 375
cadB PRK10435
cadaverine/lysine antiporter;
73-352 4.70e-05

cadaverine/lysine antiporter;


Pssm-ID: 182458  Cd Length: 435  Bit Score: 45.90  E-value: 4.70e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   73 RRLGLFSGVALIVGTMIGSGIFVSPSGLlvrtGSVG-VSFIIWLACGVLSLLGALAYAELGTMNTSSGAEWAYfmdAYGP 151
Cdd:PRK10435   5 KKIGLFACTGVVAGNMMGSGIALLPANL----ASIGsIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAY---AGEI 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993  152 APAFLF---------SWVSTLVlkpsqmaiICLSFAQYAVEAFVTECDP-PRGvvkmVALVAIVMIL-FVNCysvnLGMA 220
Cdd:PRK10435  78 SPAFGFqtgvlyyhaNWIGNLA--------IGITAVSYLSTFFPVLNDPiPAG----IACIAIVWVFtFVNM----LGGT 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993  221 VQNVFTAAKLVAVVVVICGGA---WKLMQGNTQHlSNAFNGPMPNVGAIATAFYTGLWAYDGWNNLNYVTEEIKNPSKNL 297
Cdd:PRK10435 142 WVSRLTTIGLVLVLIPVVGTAivgWHWFDAATYA-ANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTV 220

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 24641993  298 PRSIIIGIPLVTLCYALINiSYLAAMSP-QEMIESEAVAVTFGNRILGalAWLMPL 352
Cdd:PRK10435 221 PLATMLGTGLAGIIYIAAT-QVISGMFPaSVMAASGAPFAISASTILG--NWAAPL 273
2A0310 TIGR00913
amino acid permease (yeast); [Transport and binding proteins, Amino acids, peptides and amines]
 251-405 1.22e-03

amino acid permease (yeast); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273334  Cd Length: 478  Bit Score: 41.50  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   251 HLSNAFNGPMP--NVGAIATAFYTGLWAYDGWNNLNYVTEEIKNPSKNLPRSI------IIGIPLVTLCYALINISY--- 319
Cdd:TIGR00913 182 HDPGAFAGGTIggRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAkrtfwrILVFYILTLFLIGFLVPYndp 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   320 -LAAMSPQEMIESEAVAVTFGNRILGALAWLMPLSVTISTFGSANGTLFAAGRLCFAASREGHLLDILSYVHvRRLTPAP 398
Cdd:TIGR00913 262 rLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYV 340


                  ....*..
gi 24641993   399 GLIFHSL 405
Cdd:TIGR00913 341 AVIVSSL 347
2A0304 TIGR00907
amino acid permease (GABA permease); [Transport and binding proteins, Amino acids, peptides ...
 270-414 9.09e-03

amino acid permease (GABA permease); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273331 [Multi-domain]  Cd Length: 482  Bit Score: 38.57  E-value: 9.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24641993   270 FYTGLWAYDGWNNLNYVTEEIKNPSKNLPRSII--IGIPLVTLCYALINISYlAAMSPQEMIESEA---VAVTFGN---R 341
Cdd:TIGR00907 223 LLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIgaVAIGIVTGFCFNIVLFF-SMGDIDSLISSTTgqpIAQIFYNalgN 301

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24641993   342 ILGALAWLMplSVTISTFGSANGTLFAAGRLCFAASREGHL--LDILSYVHVRRLTPAPGLIFHSLIASAMVLHG 414
Cdd:TIGR00907 302 KAGAIFLLC--LILVTSFFCAITCMTANSRMIYAFSRDGGLpfSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLG 374
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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