|
Name |
Accession |
Description |
Interval |
E-value |
| Lung_7-TM_R |
pfam06814 |
Lung seven transmembrane receptor; This family represents a conserved region with eukaryotic ... |
387-671 |
2.14e-93 |
|
Lung seven transmembrane receptor; This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.
Pssm-ID: 369089 Cd Length: 294 Bit Score: 292.69 E-value: 2.14e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 387 EGLYNLYFHACPNY--HTSKIMSFNVDIEENNNGNYLSAGEMPLPALYFMMSLLFFLSGLFWVFILKKSKHTVYKIHYLM 464
Cdd:pfam06814 3 TGLYCLYFHICDPKlsGSSSSLKLKVTVVWKNPYGYLSASEAPLMPFYGIMSLAYVLLGILWSFILFKYWHDILPIQKYI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 465 AVLVFLKSLSLMFHSINYHFIEKRGEHVETWAILYYIAHLLKGAVLFITIVLIGTGWTFIKHILSDKDKKIFMIVIPLQV 544
Cdd:pfam06814 83 AAVIALGMAELAFHYIDYAFINSKGSSIEVLAVFASILSAAKKTLSRILLLIISLGYGIVKPTLGDTLSKVCGIGLLYFV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 545 LANVAQIITDESDQSDAEFRTWHNIFFFVDLlcCGAILFPIVWSIRHLHEaSATDGKAAINLRKLKLFRQFYIMIVCYIY 624
Cdd:pfam06814 163 AACVLFIVRESGEEGDSSYKLWLVLFFLLPL--ALLDLFFVVWIFRSLQK-TLRDLRLRRNLVKLSLYRHFTNMLACSVV 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 24640781 625 FTRIIVDLLQMTVV--------FQYAWLDEMFREMATYVFFVLTGYKFRPVSSHP 671
Cdd:pfam06814 240 ASFIIILVEKIYFVgtdmcnkyWKTLWLITAFWDLLTLVLLVVICYLWRPSQNNP 294
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
179-345 |
1.42e-07 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 54.60 E-value: 1.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 179 EDPLEQEPTDLKSSSPAAVAGKIElPKDEGAP-KVDAPAQNV-DAVKEESVPKPEVAANQNISDKQElppppnAAPKVEE 256
Cdd:PRK13108 293 DEALEREPAELAAAAVASAASAVG-PVGPGEPnQPDDVAEAVkAEVAEVTDEVAAESVVQVADRDGE------STPAVEE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 257 AvkseqkqEEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPLAVNSPAAAPSLDDTEVDKKnEATDTDAAPGNPFPHEGd 336
Cdd:PRK13108 366 T-------SEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEK-AAPIPDPAKPDELAVAG- 436
|
....*....
gi 24640781 337 SEEDSYGPD 345
Cdd:PRK13108 437 PGDDPAEPD 445
|
|
| ftsN |
TIGR02223 |
cell division protein FtsN; FtsN is a poorly conserved protein active in cell division in a ... |
164-295 |
3.31e-06 |
|
cell division protein FtsN; FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis. [Cellular processes, Cell division]
Pssm-ID: 274041 [Multi-domain] Cd Length: 298 Bit Score: 49.69 E-value: 3.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 164 RAAQDFSAEGPDESMEDPLEQEPTDLKSsspaavagkiELPKDEGAPKVDAPAQNVDAVKEESVPKPEVAANQNISDKQE 243
Cdd:TIGR02223 97 NDPEEPSNGGGVEESAQLTAEQRQLLEQ----------MQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKARTAEA 166
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 24640781 244 LPPPPNAAPKVEEAVKSEQKQEEAPAEKDET--PSKKEETPAKQVSVEEPKVAA 295
Cdd:TIGR02223 167 QKTPVETEKIASKVKEAKQKQKALPKQTAETqsNSKPIETAPKADKADKTKPKP 220
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
172-357 |
1.83e-05 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 47.84 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 172 EGPDESMEDPLEQEPTDLK---SSSPAAVAGKIELPKDEGAPKVDAPAQNVDavKEESVPKPEVAAnqnisdkQELPPPP 248
Cdd:NF033839 337 EKPKPEVKPQLETPKPEVKpqpEKPKPEVKPQPEKPKPEVKPQPETPKPEVK--PQPEKPKPEVKP-------QPEKPKP 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 249 NAAPKVEeavksEQKQEEAPAEKDETPSKKE--ETPAKQVS--VEEPKVAAPPlavnspaaAPSLDDTEVDKKNEATDTD 324
Cdd:NF033839 408 EVKPQPE-----KPKPEVKPQPEKPKPEVKPqpEKPKPEVKpqPEKPKPEVKP--------QPETPKPEVKPQPEKPKPE 474
|
170 180 190
....*....|....*....|....*....|....
gi 24640781 325 AAPGNPFPHEGDSEEDsygPDSFKQSQ-ENLCKD 357
Cdd:NF033839 475 VKPQPEKPKPDNSKPQ---ADDKKPSTpNNLSKD 505
|
|
| DUF4045 |
pfam13254 |
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ... |
161-332 |
6.04e-05 |
|
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.
Pssm-ID: 433066 [Multi-domain] Cd Length: 415 Bit Score: 45.93 E-value: 6.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 161 RQTRAAQDFSAEGPdesmedPLEQEPTDLKSSSPAAVAGKielpkdegAPKVDAPAQNVDAVKEEsvpkPEVAANQNISD 240
Cdd:pfam13254 186 RQSRASVDLGRPNS------FKEVTPVGLMRSPAPGGHSK--------SPSVSGISADSSPTKEE----PSEEADTLSTD 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 241 KQELPPPPNAapkveEAVKSEQKQEEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPLAVNSPAAAPSLDDTEVDKKNEA 320
Cdd:pfam13254 248 KEQSPAPTSA-----SEPPPKTKELPKDSEEPAAPSKSAEASTEKKEPDTESSPETSSEKSAPSLLSPVSKASIDKPLSS 322
|
170
....*....|..
gi 24640781 321 TDTDAAPGNPFP 332
Cdd:pfam13254 323 PDRDPLSPKPKP 334
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
202-309 |
8.88e-05 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 45.92 E-value: 8.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 202 ELPKDEGAPKVDAPAQNVDAVKEEsvPKPEVAANQNISDKQELPPPPNAAPKVEEAVKSEQKQEEAPAEKDETPS----- 276
Cdd:NF033839 425 EKPKPEVKPQPEKPKPEVKPQPEK--PKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQADDKKPStpnnl 502
|
90 100 110
....*....|....*....|....*....|...
gi 24640781 277 KKEETPAKQVSVEEPKVAAPPLAVNSPAAAPSL 309
Cdd:NF033839 503 SKDKQPSNQASTNEKATNKPKKSLPSTGSISNL 535
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
202-332 |
9.93e-05 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 45.53 E-value: 9.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 202 ELPKDEGAPKVDAPAQNVDAVKEESVPKPEVAANQNISDKQELPPPPNAAPKVEeavkSEQKQEEAPAEKdETPS----K 277
Cdd:NF033839 282 DTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQ----PEKPKPEVKPQL-ETPKpevkP 356
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 24640781 278 KEETPAKQVS--VEEPKVAAPPlavnspaaAPSLDDTEVDKKNEATDTDAAPGNPFP 332
Cdd:NF033839 357 QPEKPKPEVKpqPEKPKPEVKP--------QPETPKPEVKPQPEKPKPEVKPQPEKP 405
|
|
| FimV |
COG3170 |
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures]; |
165-326 |
4.08e-04 |
|
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
Pssm-ID: 442403 [Multi-domain] Cd Length: 508 Bit Score: 43.63 E-value: 4.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 165 AAQDFSAEGPDESmedPLEQEPTDLKSSSPAAVAGKIELPKDEGAPKVDAPAQNVDAvkeesvpkPEVAANQNisdKQEL 244
Cdd:COG3170 219 ARQEVQAQSADWA---AYRARLAAAVEPAPAAAAPAAPPAAAAAAGPVPAAAEDTLS--------PEVTAAAA---AEEA 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 245 PPPPNAAPKVEEAVKSEQKQ----EEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPLAVNSPAAAPSLDDTE------- 313
Cdd:COG3170 285 DALPEAAAELAERLAALEAQlaelQRLLALKNPAPAAAVSAPAAAAAAATVEAAAPAAAAQPAAAAPAPALDNplllagl 364
|
170
....*....|....
gi 24640781 314 -VDKKNEATDTDAA 326
Cdd:COG3170 365 lRRRKAEADEVDPV 378
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Lung_7-TM_R |
pfam06814 |
Lung seven transmembrane receptor; This family represents a conserved region with eukaryotic ... |
387-671 |
2.14e-93 |
|
Lung seven transmembrane receptor; This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.
Pssm-ID: 369089 Cd Length: 294 Bit Score: 292.69 E-value: 2.14e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 387 EGLYNLYFHACPNY--HTSKIMSFNVDIEENNNGNYLSAGEMPLPALYFMMSLLFFLSGLFWVFILKKSKHTVYKIHYLM 464
Cdd:pfam06814 3 TGLYCLYFHICDPKlsGSSSSLKLKVTVVWKNPYGYLSASEAPLMPFYGIMSLAYVLLGILWSFILFKYWHDILPIQKYI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 465 AVLVFLKSLSLMFHSINYHFIEKRGEHVETWAILYYIAHLLKGAVLFITIVLIGTGWTFIKHILSDKDKKIFMIVIPLQV 544
Cdd:pfam06814 83 AAVIALGMAELAFHYIDYAFINSKGSSIEVLAVFASILSAAKKTLSRILLLIISLGYGIVKPTLGDTLSKVCGIGLLYFV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 545 LANVAQIITDESDQSDAEFRTWHNIFFFVDLlcCGAILFPIVWSIRHLHEaSATDGKAAINLRKLKLFRQFYIMIVCYIY 624
Cdd:pfam06814 163 AACVLFIVRESGEEGDSSYKLWLVLFFLLPL--ALLDLFFVVWIFRSLQK-TLRDLRLRRNLVKLSLYRHFTNMLACSVV 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 24640781 625 FTRIIVDLLQMTVV--------FQYAWLDEMFREMATYVFFVLTGYKFRPVSSHP 671
Cdd:pfam06814 240 ASFIIILVEKIYFVgtdmcnkyWKTLWLITAFWDLLTLVLLVVICYLWRPSQNNP 294
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
179-345 |
1.42e-07 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 54.60 E-value: 1.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 179 EDPLEQEPTDLKSSSPAAVAGKIElPKDEGAP-KVDAPAQNV-DAVKEESVPKPEVAANQNISDKQElppppnAAPKVEE 256
Cdd:PRK13108 293 DEALEREPAELAAAAVASAASAVG-PVGPGEPnQPDDVAEAVkAEVAEVTDEVAAESVVQVADRDGE------STPAVEE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 257 AvkseqkqEEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPLAVNSPAAAPSLDDTEVDKKnEATDTDAAPGNPFPHEGd 336
Cdd:PRK13108 366 T-------SEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEK-AAPIPDPAKPDELAVAG- 436
|
....*....
gi 24640781 337 SEEDSYGPD 345
Cdd:PRK13108 437 PGDDPAEPD 445
|
|
| PRK13914 |
PRK13914 |
invasion associated endopeptidase; |
181-365 |
3.27e-06 |
|
invasion associated endopeptidase;
Pssm-ID: 237555 [Multi-domain] Cd Length: 481 Bit Score: 50.19 E-value: 3.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 181 PLEQEPTDLKSSSPAAV-AGKIELPKDegAPKVD--APAQNV------------------DAVKEESVPKPEVAANQNIS 239
Cdd:PRK13914 165 PAAETKTEVKQTTQATTpAPKVAETKE--TPVVDqnATTHAVksgdtiwalsvkygvsvqDIMSWNNLSSSSIYVGQKLA 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 240 DKQelpPPPNAAPKVEeaVKSEQ---KQEEAPAEKDETPS------KKEETPAKQVSVEEPKVAAPPLAVNSPAAAPSLD 310
Cdd:PRK13914 243 IKQ---TANTATPKAE--VKTEApaaEKQAAPVVKENTNTntatteKKETTTQQQTAPKAPTEAAKPAPAPSTNTNANKT 317
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 24640781 311 DTEVDKKNEATDTDAAPGNPFPHEGDSEEDSYGPDSFKQSQENLCKDSTMPLVRE 365
Cdd:PRK13914 318 NTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNSSASAIIAE 372
|
|
| ftsN |
TIGR02223 |
cell division protein FtsN; FtsN is a poorly conserved protein active in cell division in a ... |
164-295 |
3.31e-06 |
|
cell division protein FtsN; FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis. [Cellular processes, Cell division]
Pssm-ID: 274041 [Multi-domain] Cd Length: 298 Bit Score: 49.69 E-value: 3.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 164 RAAQDFSAEGPDESMEDPLEQEPTDLKSsspaavagkiELPKDEGAPKVDAPAQNVDAVKEESVPKPEVAANQNISDKQE 243
Cdd:TIGR02223 97 NDPEEPSNGGGVEESAQLTAEQRQLLEQ----------MQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKARTAEA 166
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 24640781 244 LPPPPNAAPKVEEAVKSEQKQEEAPAEKDET--PSKKEETPAKQVSVEEPKVAA 295
Cdd:TIGR02223 167 QKTPVETEKIASKVKEAKQKQKALPKQTAETqsNSKPIETAPKADKADKTKPKP 220
|
|
| PRK12757 |
PRK12757 |
cell division protein FtsN; Provisional |
176-284 |
5.89e-06 |
|
cell division protein FtsN; Provisional
Pssm-ID: 237191 [Multi-domain] Cd Length: 256 Bit Score: 48.50 E-value: 5.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 176 ESMEDPLEQEPTDLKssspaavagkiELPKDEGAPKVdaPAQNVDAVKEESVPKPEVaanQNISDKQELPPPPNAAPKVE 255
Cdd:PRK12757 89 EQMQADMRQQPTQLS-----------EVPYNEQTPQV--PRSTVQIQQQAQQQQPPA---TTAQPQPVTPPRQTTAPVQP 152
|
90 100
....*....|....*....|....*....
gi 24640781 256 EAVKSEQKQEEAPAEKDETPSKKEETPAK 284
Cdd:PRK12757 153 QTPAPVRTQPAAPVTQAVEAPKVEAEKEK 181
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
195-307 |
1.15e-05 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 47.37 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 195 AAVAGKIELPKDEG-------APKVDAPAQNVDAVKE---------ESVPKPEVAANQNISDKQELP-PPPNAAPKVEEA 257
Cdd:PRK10819 33 TSVHQVIELPAPAQpisvtmvAPADLEPPQAVQPPPEpvvepepepEPIPEPPKEAPVVIPKPEPKPkPKPKPKPKPVKK 112
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 24640781 258 VKSEQKQEEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPlaVNSPAAAP 307
Cdd:PRK10819 113 VEEQPKREVKPVEPRPASPFENTAPARPTSSTATAAASKP--VTSVSSGP 160
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
142-339 |
1.42e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 48.78 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 142 PSRTKRHSHMAKVSDSVLFRQTRAAQDfsAEGPDESMEDPLEQEPTdlKSSSPAAVAGKIELPKDEGAPKVDAPAQNVDa 221
Cdd:PHA03247 2664 PRRARRLGRAAQASSPPQRPRRRAARP--TVGSLTSLADPPPPPPT--PEPAPHALVSATPLPPGPAAARQASPALPAA- 2738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 222 vkeesvPKPEVAANQNISDKQELPPPPNAAPKVEEAVKSEQKQEEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPLAVN 301
Cdd:PHA03247 2739 ------PAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVL 2812
|
170 180 190
....*....|....*....|....*....|....*...
gi 24640781 302 SPAAApsLDDTEVDKKNEATDTDAAPGNPFPHEGDSEE 339
Cdd:PHA03247 2813 APAAA--LPPAASPAGPLPPPTSAQPTAPPPPPGPPPP 2848
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
186-308 |
1.42e-05 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 48.02 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 186 PTDLKSSSPAAVAGKIELPKDEGAPKVDA---PAQNVDAVKEESVPKPEVA---ANQNISDKQELPPPPNAAPKVEEAVK 259
Cdd:PTZ00436 211 PSGKKSAKAAAPAKAAAAPAKAAAPPAKAaaaPAKAAAAPAKAAAPPAKAAappAKAAAPPAKAAAPPAKAAAPPAKAAA 290
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 24640781 260 SEQKQEEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPLAVNSPAAAPS 308
Cdd:PTZ00436 291 PPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAA 339
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
162-338 |
1.60e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 48.17 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 162 QTRAAQDFSAEGpdESMEDPLEQEPTDLKsssPAAVAGKielPKDEGAPKVDAPAQNVDAVKEESVPKP------EVAAN 235
Cdd:PRK08691 408 QTASAAAMPSEG--KTAGPVSNQENNDVP---PWEDAPD---EAQTAAGTAQTSAKSIQTASEAETPPEnqvsknKAADN 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 236 QNISDKQELPPP-PNAAPKVEEAVKSEQKQEEAPAEkdetPSKKEETPAKQVSVE-EPKVAAPPLAVNSPAaapslddte 313
Cdd:PRK08691 480 ETDAPLSEVPSEnPIQATPNDEAVETETFAHEAPAE----PFYGYGFPDNDCPPEdGAEIPPPDWEHAAPA--------- 546
|
170 180
....*....|....*....|....*....
gi 24640781 314 vDKKNEATDTDAAPG----NPFPHEGDSE 338
Cdd:PRK08691 547 -DTAGGGADEEAEAGgiggNNTPSAPPPE 574
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
172-357 |
1.83e-05 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 47.84 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 172 EGPDESMEDPLEQEPTDLK---SSSPAAVAGKIELPKDEGAPKVDAPAQNVDavKEESVPKPEVAAnqnisdkQELPPPP 248
Cdd:NF033839 337 EKPKPEVKPQLETPKPEVKpqpEKPKPEVKPQPEKPKPEVKPQPETPKPEVK--PQPEKPKPEVKP-------QPEKPKP 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 249 NAAPKVEeavksEQKQEEAPAEKDETPSKKE--ETPAKQVS--VEEPKVAAPPlavnspaaAPSLDDTEVDKKNEATDTD 324
Cdd:NF033839 408 EVKPQPE-----KPKPEVKPQPEKPKPEVKPqpEKPKPEVKpqPEKPKPEVKP--------QPETPKPEVKPQPEKPKPE 474
|
170 180 190
....*....|....*....|....*....|....
gi 24640781 325 AAPGNPFPHEGDSEEDsygPDSFKQSQ-ENLCKD 357
Cdd:NF033839 475 VKPQPEKPKPDNSKPQ---ADDKKPSTpNNLSKD 505
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
162-321 |
3.12e-05 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 47.73 E-value: 3.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 162 QTRAAQDFSAEGPDESMEDPLEQEPTDLKSSSPAAVAGKIE-LPKDEGAPKVDAPAQNVDAVK-EESVP---------KP 230
Cdd:PRK10811 849 RPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEaVAEVVEEPVVVAEPQPEEVVVvETTHPeviaapvteQP 928
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 231 EVAANQNISDKQELPPPPNAAPKVEEAVKSEQKQEEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPlaVNSPAAAPSLD 310
Cdd:PRK10811 929 QVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVT--AVEPEVAPAQV 1006
|
170
....*....|.
gi 24640781 311 DTEVDKKNEAT 321
Cdd:PRK10811 1007 PEATVEHNHAT 1017
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
156-352 |
5.07e-05 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 47.00 E-value: 5.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 156 DSVLFRQTRAAQdfsaegPDESMEDPLEQEPTdlkSSSPAAVAGKIELPKDEGAPKVDAPAQNvdavkeESVPKPEVAAN 235
Cdd:PRK10263 290 DDVLFSGNRATQ------PEYDEYDPLLNGAP---ITEPVAVAAAATTATQSWAAPVEPVTQT------PPVASVDVPPA 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 236 QNISDKQELPpppnaAPKVEEAVKSEQKQEEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPLAV--NSPAAAPSLDDTE 313
Cdd:PRK10263 355 QPTVAWQPVP-----GPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQpaQQPYYAPAPEQPA 429
|
170 180 190
....*....|....*....|....*....|....*....
gi 24640781 314 VDKKNEATDTDAAPGNPFPHEgdSEEDSYGPDSFKQSQE 352
Cdd:PRK10263 430 QQPYYAPAPEQPVAGNAWQAE--EQQSTFAPQSTYQTEQ 466
|
|
| DUF4045 |
pfam13254 |
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ... |
161-332 |
6.04e-05 |
|
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.
Pssm-ID: 433066 [Multi-domain] Cd Length: 415 Bit Score: 45.93 E-value: 6.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 161 RQTRAAQDFSAEGPdesmedPLEQEPTDLKSSSPAAVAGKielpkdegAPKVDAPAQNVDAVKEEsvpkPEVAANQNISD 240
Cdd:pfam13254 186 RQSRASVDLGRPNS------FKEVTPVGLMRSPAPGGHSK--------SPSVSGISADSSPTKEE----PSEEADTLSTD 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 241 KQELPPPPNAapkveEAVKSEQKQEEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPLAVNSPAAAPSLDDTEVDKKNEA 320
Cdd:pfam13254 248 KEQSPAPTSA-----SEPPPKTKELPKDSEEPAAPSKSAEASTEKKEPDTESSPETSSEKSAPSLLSPVSKASIDKPLSS 322
|
170
....*....|..
gi 24640781 321 TDTDAAPGNPFP 332
Cdd:pfam13254 323 PDRDPLSPKPKP 334
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
202-309 |
8.88e-05 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 45.92 E-value: 8.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 202 ELPKDEGAPKVDAPAQNVDAVKEEsvPKPEVAANQNISDKQELPPPPNAAPKVEEAVKSEQKQEEAPAEKDETPS----- 276
Cdd:NF033839 425 EKPKPEVKPQPEKPKPEVKPQPEK--PKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQADDKKPStpnnl 502
|
90 100 110
....*....|....*....|....*....|...
gi 24640781 277 KKEETPAKQVSVEEPKVAAPPLAVNSPAAAPSL 309
Cdd:NF033839 503 SKDKQPSNQASTNEKATNKPKKSLPSTGSISNL 535
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
202-332 |
9.93e-05 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 45.53 E-value: 9.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 202 ELPKDEGAPKVDAPAQNVDAVKEESVPKPEVAANQNISDKQELPPPPNAAPKVEeavkSEQKQEEAPAEKdETPS----K 277
Cdd:NF033839 282 DTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQ----PEKPKPEVKPQL-ETPKpevkP 356
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 24640781 278 KEETPAKQVS--VEEPKVAAPPlavnspaaAPSLDDTEVDKKNEATDTDAAPGNPFP 332
Cdd:NF033839 357 QPEKPKPEVKpqPEKPKPEVKP--------QPETPKPEVKPQPEKPKPEVKPQPEKP 405
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
185-340 |
1.37e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 45.47 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 185 EPTDLKSSSPAAVAGKIELPKDEGAPKVDAPAQNVDAVKEESVPKPEVAANQNISDKQELPPPPNAAP-KVEEAVKSEQk 263
Cdd:PRK08691 373 ENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPdEAQTAAGTAQ- 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 264 qeeAPAEKDETPSKKEETPAKQVSVEEP---KVAAPPLAVNSPA---AAPSLDDTEVDKKNEATDTDAAPGNPFPHEGDS 337
Cdd:PRK08691 452 ---TSAKSIQTASEAETPPENQVSKNKAadnETDAPLSEVPSENpiqATPNDEAVETETFAHEAPAEPFYGYGFPDNDCP 528
|
...
gi 24640781 338 EED 340
Cdd:PRK08691 529 PED 531
|
|
| PTZ00144 |
PTZ00144 |
dihydrolipoamide succinyltransferase; Provisional |
245-308 |
1.43e-04 |
|
dihydrolipoamide succinyltransferase; Provisional
Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 45.06 E-value: 1.43e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24640781 245 PPPPNAAPKVEEAVKSEQKQEEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPLAVNSPAAAPS 308
Cdd:PTZ00144 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPR 188
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
193-333 |
1.93e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 44.84 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 193 SPAAVAGKIELPKDEGAPKV---DAPAQNVDAVKEESVPKPEVAAnQNISDKQELPP----PPNAAPKVEEAVKSE---Q 262
Cdd:PRK07003 372 VPARVAGAVPAPGARAAAAVgasAVPAVTAVTGAAGAALAPKAAA-AAAATRAEAPPaapaPPATADRGDDAADGDapvP 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 263 KQEEAPAEKDETPSKKEETPAKQVSVEE----------PKVAAPPLAVNSPAAAPSLDDTEVDKKNEATDTDAAPGNPFP 332
Cdd:PRK07003 451 AKANARASADSRCDERDAQPPADSGSASapasdappdaAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAP 530
|
.
gi 24640781 333 H 333
Cdd:PRK07003 531 E 531
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
171-308 |
3.18e-04 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 43.79 E-value: 3.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 171 AEGPDESMEDPLEQEPTDLKSSSPAAVAGKIelPKDEGAPKVDA---PAQNVDAVKEESVPKPEVAAnqnisdkqelpPP 247
Cdd:PTZ00436 219 AAAPAKAAAAPAKAAAPPAKAAAAPAKAAAA--PAKAAAPPAKAaapPAKAAAPPAKAAAPPAKAAA-----------PP 285
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24640781 248 PNAAPKVEEAVKSEQKQEEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPLAVNSPAAAPS 308
Cdd:PTZ00436 286 AKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAA 346
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
171-306 |
3.35e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 44.07 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 171 AEGPDESMEDPLEQEPTDLKSSSPAAVAGKIELPKDEGAPKVDAPAQNVDAVKEESVPKPEVAANQnisdKQELPPPPNA 250
Cdd:PRK07003 423 AEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDA----AFEPAPRAAA 498
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 24640781 251 APKVEEAVKSEQKQEEAPAEKDETPSKKEetPAKQVSVEEPKVAAPPLAVNSPAAA 306
Cdd:PRK07003 499 PSAATPAAVPDARAPAAASREDAPAAAAP--PAPEARPPTPAAAAPAARAGGAAAA 552
|
|
| FimV |
COG3170 |
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures]; |
165-326 |
4.08e-04 |
|
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
Pssm-ID: 442403 [Multi-domain] Cd Length: 508 Bit Score: 43.63 E-value: 4.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 165 AAQDFSAEGPDESmedPLEQEPTDLKSSSPAAVAGKIELPKDEGAPKVDAPAQNVDAvkeesvpkPEVAANQNisdKQEL 244
Cdd:COG3170 219 ARQEVQAQSADWA---AYRARLAAAVEPAPAAAAPAAPPAAAAAAGPVPAAAEDTLS--------PEVTAAAA---AEEA 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 245 PPPPNAAPKVEEAVKSEQKQ----EEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPLAVNSPAAAPSLDDTE------- 313
Cdd:COG3170 285 DALPEAAAELAERLAALEAQlaelQRLLALKNPAPAAAVSAPAAAAAAATVEAAAPAAAAQPAAAAPAPALDNplllagl 364
|
170
....*....|....
gi 24640781 314 -VDKKNEATDTDAA 326
Cdd:COG3170 365 lRRRKAEADEVDPV 378
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
196-327 |
4.36e-04 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 43.40 E-value: 4.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 196 AVAGKIELPKDEGAPKVDAPAQNVDAVKEESVPKPEVAAnqnisdkqelPPPPNAAPKVEEAVkseqkqeeAPAEKDETP 275
Cdd:PTZ00436 203 AAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAA----------APAKAAAAPAKAAA--------PPAKAAAPP 264
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 24640781 276 SKKEETPAKQVSVEEPKVAAPPLAVNSP---AAAPSLDDTEVDKKNEATDTDAAP 327
Cdd:PTZ00436 265 AKAAAPPAKAAAPPAKAAAPPAKAAAPPakaAAAPAKAAAAPAKAAAAPAKAAAP 319
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
162-340 |
4.54e-04 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 43.85 E-value: 4.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 162 QTRAAQDFSAEGPDESMEDPLEQEPTDLKSSSPAAVAGKIELPKDEGAPKVDAPAQNVDAVKEESVP-----------KP 230
Cdd:COG5271 551 QDADETDEPEATAEEDEPDEAEAETEDATENADADETEESADESEEAEASEDEAAEEEEADDDEADAdadgaadeeetEE 630
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 231 EVAANQNISDKQELPPPPNA-APKVEEAVKSEQKQEEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPLAVNSPAAAPSL 309
Cdd:COG5271 631 EAAEDEAAEPETDASEAADEdADAETEAEASADESEEEAEDESETSSEDAEEDADAAAAEASDDEEETEEADEDAETASE 710
|
170 180 190
....*....|....*....|....*....|....*..
gi 24640781 310 D------DTEVDKKNEATDTDAAPGNPFPHEGDSEED 340
Cdd:COG5271 711 EadaeeaDTEADGTAEEAEEAAEEAESADEEAASLPD 747
|
|
| motB |
PRK05996 |
MotB family protein; |
165-316 |
1.16e-03 |
|
MotB family protein;
Pssm-ID: 235665 [Multi-domain] Cd Length: 423 Bit Score: 41.99 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 165 AAQDFSAEGPD--ESMEDPLEqePTDLKSSSPAAVAGKiELPKDEGAPKVDAPAQNVDAVKEESVPKPEVAANQNISDKQ 242
Cdd:PRK05996 162 AAQSGPATGADggEAYRDPFD--PDFWSKQVEVTTAGD-LLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATE 238
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24640781 243 ELPpppnaAPKVEEAVKSEQKQEEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPLAvnspAAAPSLDDTEVDK 316
Cdd:PRK05996 239 EEL-----IADAKKAATGEPAANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAG----KLAEGVTVTPVEG 303
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
183-327 |
2.52e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 41.18 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 183 EQEPTDLKSSSPAAVAgkielPKDEGAPKVDAPAQNVDAVKEESVPkPEVAANQNISDKQELP---PPPNAAPKVEE--- 256
Cdd:PRK10811 857 EQREAEEVQVQPVVAE-----VPVAAAVEPVVSAPVVEAVAEVVEE-PVVVAEPQPEEVVVVEtthPEVIAAPVTEQpqv 930
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 257 ------AVKSEQKQEEAPA---EKDETPSKKEETPAKQVSVEEPKVAAPPLAVNSPAAAPSLDDTEVDKKNEATDTDAAP 327
Cdd:PRK10811 931 itesdvAVAQEVAEHAEPVvepQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEAT 1010
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
202-307 |
3.34e-03 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 38.56 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 202 ELPKDEGAPKVDAPAQNVDAVKEESVPKPEVAanqnisdkqELPPPPNAAPKVEEAVKSEQKqeeAPAEKDEtpSKKEET 281
Cdd:pfam05104 49 KLPESEQADESEEEPREFKTPDEAPSAALEPE---------PVPTPVPAPVEPEPAPPSESP---APSPKEK--KKKEKK 114
|
90 100
....*....|....*....|....*.
gi 24640781 282 PAKQVSVEEPKVAAPPlAVNSPAAAP 307
Cdd:pfam05104 115 SAKVEPAETPEAVQPK-PALEKEEPP 139
|
|
| Spore_coat_CotO |
pfam14153 |
Spore coat protein CotO; Bacillus spores are protected by a protein shell consisting of over ... |
194-290 |
3.87e-03 |
|
Spore coat protein CotO; Bacillus spores are protected by a protein shell consisting of over 50 different polypeptides, known as the coat. This family of proteins has an important morphogenetic role in coat assembly, it is involved in the assembly of at least 5 different coat proteins including CotB, CotG, CotS, CotSA and CotW. It is likely to act at a late stage of coat assembly.
Pssm-ID: 372932 [Multi-domain] Cd Length: 180 Bit Score: 39.04 E-value: 3.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 194 PAAVA-GKIELPKDEGAPKVDAPAQNVDAVKEesvPKPEVAANQNIS--DKQELPPPPNA---APKVEEAVKSEQKQEEA 267
Cdd:pfam14153 19 PAAPKmQEIVRTSFKNEKPQAAAAEEKDNAKE---SKPSSAVEEEIEqeKQKPAASPAEQqeeAPAEEEEKKEQEEQKEE 95
|
90 100
....*....|....*....|....
gi 24640781 268 PAEKDET-PSKKeetPAKQVSVEE 290
Cdd:pfam14153 96 EEEPQETvPRRK---RFKEMNVEE 116
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
172-285 |
7.57e-03 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 37.41 E-value: 7.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 172 EGPDESMEDPLEQEPTDLKSSspaavagkielpkdEGAPKVdapaqnvdAVKEESVPKPEVAANQNISDkqelPPPPNAA 251
Cdd:pfam05104 49 KLPESEQADESEEEPREFKTP--------------DEAPSA--------ALEPEPVPTPVPAPVEPEPA----PPSESPA 102
|
90 100 110
....*....|....*....|....*....|....*
gi 24640781 252 PKVEEAVKSEQK-QEEAPAEKDETPSKKEETPAKQ 285
Cdd:pfam05104 103 PSPKEKKKKEKKsAKVEPAETPEAVQPKPALEKEE 137
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
190-338 |
8.34e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 39.46 E-value: 8.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 190 KSSSPAAVAGKIELPKDEGAPKVDAPAQNVDAVKEESVPKPEVAANQNISDkqelPPPPNAAPKVEEAVKSEQKQEEApa 269
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPA----VPLPETTSQLLAARQQLQRAQGA-- 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 270 ekdeTPSKKEE----TPAKQVSVEEPKVAAPPLAVNSPAAAPSLDDT--------EVDKKNEATdTDAAPGNPFPHEGDS 337
Cdd:PRK07994 436 ----TKAKKSEpaaaSRARPVNSALERLASVRPAPSALEKAPAKKEAyrwkatnpVEVKKEPVA-TPKALKKALEHEKTP 510
|
.
gi 24640781 338 E 338
Cdd:PRK07994 511 E 511
|
|
| PLN03237 |
PLN03237 |
DNA topoisomerase 2; Provisional |
162-323 |
8.89e-03 |
|
DNA topoisomerase 2; Provisional
Pssm-ID: 215641 [Multi-domain] Cd Length: 1465 Bit Score: 39.46 E-value: 8.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 162 QTRAAQDFSAEGPDESmeDPLEQEPTDLKSSSPAAVAGKIELPKDEGAPKVDA--PAQNVDAVKEESVPKPEVAanQNIS 239
Cdd:PLN03237 1218 ETTEETYGSSAMETEN--VAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDrlAAYNLDSAPAQSAKMEETV--KAVP 1293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24640781 240 DKQELPPPPNAAPKVEEAVKSEQKQEEAPAEKDETPSKKEETPAKQVSVeePKVAAPPLAVNSPAAA----PSLDDTEVD 315
Cdd:PLN03237 1294 ARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPAAAN--KKAAKPPAAAKKRGPAtvqsGQKLLTEML 1371
|
....*...
gi 24640781 316 KKNEATDT 323
Cdd:PLN03237 1372 KPAEAIGI 1379
|
|
| |
