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Conserved domains on  [gi|18858101|ref|NP_572274|]
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ubiquitin specific protease 30, isoform A [Drosophila melanogaster]

Protein Classification

Peptidase_C19 and Peptidase_C19F domain-containing protein( domain architecture ID 10245575)

Peptidase_C19 and Peptidase_C19F domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
323-548 3.87e-61

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 201.83  E-value: 3.87e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 323 SQVAHPFQGAMGAQIVCNGCGSKSAVRYDKFDSITLNLPPQRR-TGLSLGHLLSEYITSEDLSDVKCDSCnettthtkSV 401
Cdd:cd02662  50 QLLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSgSGTTLEHCLDDFLSTEIIDDYKCDRC--------QT 121
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 402 TFAKLPACLCIHVARTVWLPTGQVCKRKDYVHFPESLsmapysfvqphlnsqagtpwgstmslyssslpmnngvgggegf 481
Cdd:cd02662 122 VIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL------------------------------------------- 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 482 gtmfPKNLYRLLAVVVHSGEANSGHFVTYRRGSLR------------------NAHRWYYTSDTIVREVSIDEVL-SVPA 542
Cdd:cd02662 159 ----PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFskdkepgsfvrmregpssTSHPWWRISDTTVKEVSESEVLeQKSA 234

                ....*.
gi 18858101 543 YLLFYD 548
Cdd:cd02662 235 YMLFYE 240
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
39-139 2.45e-05

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member cd02671:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 332  Bit Score: 46.42  E-value: 2.45e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101  39 AGLHNFGLTCFLNTLLQAMAACPQFIAWLQLYNNASPDRKSLITSMLNTLEVVNGTHATLRGDpyspgavlRALNALGWV 118
Cdd:cd02671  25 VGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLQSSFLLNPEKYNDELANQAPR--------RLLNALREV 96
                        90       100
                ....*....|....*....|....*
gi 18858101 119 IPQEE----HDAHELFHVLLTCLEE 139
Cdd:cd02671  97 NPMYEgylqHDAQEVLQCILGNIQE 121
 
Name Accession Description Interval E-value
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
323-548 3.87e-61

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 201.83  E-value: 3.87e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 323 SQVAHPFQGAMGAQIVCNGCGSKSAVRYDKFDSITLNLPPQRR-TGLSLGHLLSEYITSEDLSDVKCDSCnettthtkSV 401
Cdd:cd02662  50 QLLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSgSGTTLEHCLDDFLSTEIIDDYKCDRC--------QT 121
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 402 TFAKLPACLCIHVARTVWLPTGQVCKRKDYVHFPESLsmapysfvqphlnsqagtpwgstmslyssslpmnngvgggegf 481
Cdd:cd02662 122 VIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL------------------------------------------- 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 482 gtmfPKNLYRLLAVVVHSGEANSGHFVTYRRGSLR------------------NAHRWYYTSDTIVREVSIDEVL-SVPA 542
Cdd:cd02662 159 ----PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFskdkepgsfvrmregpssTSHPWWRISDTTVKEVSESEVLeQKSA 234

                ....*.
gi 18858101 543 YLLFYD 548
Cdd:cd02662 235 YMLFYE 240
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
304-547 2.01e-30

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 121.01  E-value: 2.01e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101   304 LERLHRGPGRVSIWSNmmPSQVAHPFQGAMGAQIVCNGCGSKSAVRYDKFDSITLNLPPQRRTGLSLG----HLLSEYIT 379
Cdd:pfam00443  99 LDGLHEDLNGNHSTEN--ESLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLqicfLQFSKLEE 176
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101   380 SEDLSDVKCDSCNETTTHTKSVTFAKLPACLCIHVAR---TVWLPTgqvcKRKDYVHFPESLSMAPYsfVQPHLNSQAGt 456
Cdd:pfam00443 177 LDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRfsyNRSTWE----KLNTEVEFPLELDLSRY--LAEELKPKTN- 249
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101   457 pwgstmslyssslpmnngvgggegfgtmfPKNLYRLLAVVVHSGEANSGHFVTYRRGSLRNahRWYYTSDTIVREVSID- 535
Cdd:pfam00443 250 -----------------------------NLQDYRLVAVVVHSGSLSSGHYIAYIKAYENN--RWYKFDDEKVTEVDEEt 298
                         250
                  ....*....|..
gi 18858101   536 EVLSVPAYLLFY 547
Cdd:pfam00443 299 AVLSSSAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
368-549 5.23e-08

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 56.04  E-value: 5.23e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 368 LSLGHLLSEYITSEDL--SD-VKCDSCNETTTHTKSVTFAKLPACLCIHVARTVWLPTGQVcKRKDYVHFPES---LSMA 441
Cdd:COG5560 675 ITLQDCLNEFSKPEQLglSDsWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRD-KIDDLVEYPIDdldLSGV 753
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 442 PYSFVQPHLnsqagtpwgstmslyssslpmnngvgggegfgtmfpknLYRLLAVVVHSGEANSGHFVTYRRGSLRNahRW 521
Cdd:COG5560 754 EYMVDDPRL--------------------------------------IYDLYAVDNHYGGLSGGHYTAYARNFANN--GW 793
                       170       180
                ....*....|....*....|....*...
gi 18858101 522 YYTSDTIVREVSIDEVLSVPAYLLFYDR 549
Cdd:COG5560 794 YLFDDSRITEVDPEDSVTSSAYVLFYRR 821
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
39-139 2.45e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 46.42  E-value: 2.45e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101  39 AGLHNFGLTCFLNTLLQAMAACPQFIAWLQLYNNASPDRKSLITSMLNTLEVVNGTHATLRGDpyspgavlRALNALGWV 118
Cdd:cd02671  25 VGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLQSSFLLNPEKYNDELANQAPR--------RLLNALREV 96
                        90       100
                ....*....|....*....|....*
gi 18858101 119 IPQEE----HDAHELFHVLLTCLEE 139
Cdd:cd02671  97 NPMYEgylqHDAQEVLQCILGNIQE 121
 
Name Accession Description Interval E-value
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
323-548 3.87e-61

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 201.83  E-value: 3.87e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 323 SQVAHPFQGAMGAQIVCNGCGSKSAVRYDKFDSITLNLPPQRR-TGLSLGHLLSEYITSEDLSDVKCDSCnettthtkSV 401
Cdd:cd02662  50 QLLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSgSGTTLEHCLDDFLSTEIIDDYKCDRC--------QT 121
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 402 TFAKLPACLCIHVARTVWLPTGQVCKRKDYVHFPESLsmapysfvqphlnsqagtpwgstmslyssslpmnngvgggegf 481
Cdd:cd02662 122 VIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL------------------------------------------- 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 482 gtmfPKNLYRLLAVVVHSGEANSGHFVTYRRGSLR------------------NAHRWYYTSDTIVREVSIDEVL-SVPA 542
Cdd:cd02662 159 ----PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFskdkepgsfvrmregpssTSHPWWRISDTTVKEVSESEVLeQKSA 234

                ....*.
gi 18858101 543 YLLFYD 548
Cdd:cd02662 235 YMLFYE 240
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
304-547 4.28e-44

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 157.26  E-value: 4.28e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 304 LERLHR---GPGRVSIWSNMMPSQVAHPFQGAMGAQIVCNGCGSKSaVRYDKFDSITLNLPPQRRTGLSLGHLLSEYITS 380
Cdd:cd02257  33 LDKLHEelkKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHES-VSTEPELFLSLPLPVKGLPQVSLEDCLEKFFKE 111
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 381 EDLSDVKCDSCN--ETTTHTKSVTFAKLPACLCIHVARTVWLPTGQVCKRKDYVHFPESLSMAPYsfvqphlnsqagtpw 458
Cdd:cd02257 112 EILEGDNCYKCEkkKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLSPY--------------- 176
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 459 gstmslYSSSLPMNNGVGggegfgtmfPKNLYRLLAVVVHSGE-ANSGHFVTYRRGSLRNahRWYYTSDTIVREVSIDEV 537
Cdd:cd02257 177 ------LSEGEKDSDSDN---------GSYKYELVAVVVHSGTsADSGHYVAYVKDPSDG--KWYKFNDDKVTEVSEEEV 239
                       250
                ....*....|....*
gi 18858101 538 LSVP-----AYLLFY 547
Cdd:cd02257 240 LEFGslsssAYILFY 254
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
304-547 2.01e-30

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 121.01  E-value: 2.01e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101   304 LERLHRGPGRVSIWSNmmPSQVAHPFQGAMGAQIVCNGCGSKSAVRYDKFDSITLNLPPQRRTGLSLG----HLLSEYIT 379
Cdd:pfam00443  99 LDGLHEDLNGNHSTEN--ESLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLqicfLQFSKLEE 176
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101   380 SEDLSDVKCDSCNETTTHTKSVTFAKLPACLCIHVAR---TVWLPTgqvcKRKDYVHFPESLSMAPYsfVQPHLNSQAGt 456
Cdd:pfam00443 177 LDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRfsyNRSTWE----KLNTEVEFPLELDLSRY--LAEELKPKTN- 249
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101   457 pwgstmslyssslpmnngvgggegfgtmfPKNLYRLLAVVVHSGEANSGHFVTYRRGSLRNahRWYYTSDTIVREVSID- 535
Cdd:pfam00443 250 -----------------------------NLQDYRLVAVVVHSGSLSSGHYIAYIKAYENN--RWYKFDDEKVTEVDEEt 298
                         250
                  ....*....|..
gi 18858101   536 EVLSVPAYLLFY 547
Cdd:pfam00443 299 AVLSSSAYILFY 310
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
304-547 6.41e-29

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 117.09  E-value: 6.41e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 304 LERLHRGPGRVS--IWSNMMPSQVAHP-FQGAMGAQIVCNGCGSKSaVRYDKFDSITLNLPPQRRTGLSLGHL------- 373
Cdd:cd02660  99 LDQLHTHYGGDKneANDESHCNCIIHQtFSGSLQSSVTCQRCGGVS-TTVDPFLDLSLDIPNKSTPSWALGESgvsgtpt 177
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 374 ----LSEYITSEDL--SDVKCDSCNETTTHTKSVTFAKLPACLCIHVARTVWLPTGQVCKRKDYVHFPESLSMAPYSFVQ 447
Cdd:cd02660 178 lsdcLDRFTRPEKLgdFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSS 257
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 448 PHlnsqagtpwgSTMSLYSSSlpmnngvgggegfgtmfPKNLYRLLAVVVHSGEANSGHFVTYRRGslrNAHRWYYTSDT 527
Cdd:cd02660 258 IG----------DTQDSNSLD-----------------PDYTYDLFAVVVHKGTLDTGHYTAYCRQ---GDGQWFKFDDA 307
                       250       260
                ....*....|....*....|
gi 18858101 528 IVREVSIDEVLSVPAYLLFY 547
Cdd:cd02660 308 MITRVSEEEVLKSQAYLLFY 327
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
323-547 4.10e-27

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 109.30  E-value: 4.10e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 323 SQVAHPFQGAMGAQIVCNGCGSKSaVRYDKFDSITLNLPPQRR--TGLSLGHLLSEYITSEDLSD---VKCDSCNETTTH 397
Cdd:cd02674  38 SIIVDLFQGQLKSRLTCLTCGKTS-TTFEPFTYLSLPIPSGSGdaPKVTLEDCLRLFTKEETLDGdnaWKCPKCKKKRKA 116
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 398 TKSVTFAKLPACLCIHVARTVWLPTGQVcKRKDYVHFP-ESLSMAPYsfvqphlnsqagtpwgstmsLYSSSLPMNNgvg 476
Cdd:cd02674 117 TKKLTISRLPKVLIIHLKRFSFSRGSTR-KLTTPVTFPlNDLDLTPY--------------------VDTRSFTGPF--- 172
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18858101 477 ggegfgtmfpknLYRLLAVVVHSGEANSGHFVTYRRGSLRNahRWYYTSDTIVREVSIDEVLSVPAYLLFY 547
Cdd:cd02674 173 ------------KYDLYAVVNHYGSLNGGHYTAYCKNNETN--DWYKFDDSRVTKVSESSVVSSSAYILFY 229
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
329-547 7.77e-26

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 107.09  E-value: 7.77e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 329 FQGAMGAQIVCNGCGSKSAVrYDKFDSITLNLPPQRRTGLSLGHLLSEYITSEDLSDVKCDSCNETTTHTKSVTFAKLPA 408
Cdd:cd02667  73 FGGELTSTIMCESCGTVSLV-YEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTKAKKQYLISKLPP 151
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 409 CLCIHVARTVWLPTGQVCKRKDYVHFPESLSMAPysFVQPHLNSQAGtpwgstmslySSSLpmnngvgggegfgtmfpkn 488
Cdd:cd02667 152 VLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAP--FCDPKCNSSED----------KSSV------------------- 200
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18858101 489 LYRLLAVVVHSGEANSGHFVTYRRGSLRNAH-------------------RWYYTSDTIVREVSIDEVLSVPAYLLFY 547
Cdd:cd02667 201 LYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRlsdltkskpaadeagpgsgQWYYISDSDVREVSLEEVLKSEAYLLFY 278
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
325-547 1.49e-23

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 101.20  E-value: 1.49e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 325 VAHPFQGAMGAQIVCNGCGSKSavryDKFDSItLNLPPQRRTGLSLGHLLSEYITSEDLSD---VKCDSCNETTTHTKSV 401
Cdd:cd02661 124 VQQIFGGYLRSQVKCLNCKHVS----NTYDPF-LDLSLDIKGADSLEDALEQFTKPEQLDGenkYKCERCKKKVKASKQL 198
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 402 TFAKLPACLCIHVARTVWLPTGQVCKRkdyVHFPESLSMAPYsfvqphlnsqagtpwgstMSLYSSSLPMnngvgggegf 481
Cdd:cd02661 199 TIHRAPNVLTIHLKRFSNFRGGKINKQ---ISFPETLDLSPY------------------MSQPNDGPLK---------- 247
                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18858101 482 gtmfpknlYRLLAVVVHSG-EANSGHFVTYRRGSLRnahRWYYTSDTIVREVSIDEVLSVPAYLLFY 547
Cdd:cd02661 248 --------YKLYAVLVHSGfSPHSGHYYCYVKSSNG---KWYNMDDSKVSPVSIETVLSQKAYILFY 303
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
287-549 1.17e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 93.09  E-value: 1.17e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 287 QQQDeglnrrVSSSCRSLerlhrgpgrVSIWSNMMPSQVAHP-----FQGAMGAQIVCNGCGSKSAvRYDKFDSITLNLP 361
Cdd:cd02659  85 EQHD------VQEFFRVL---------FDKLEEKLKGTGQEGliknlFGGKLVNYIICKECPHESE-REEYFLDLQVAVK 148
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 362 PQRrtglSLGHLLSEYITSEDLSD---VKCDSCNETTTHTKSVTFAKLPACLCIHVAR-TVWLPTGQVCKRKDYVHFPES 437
Cdd:cd02659 149 GKK----NLEESLDAYVQGETLEGdnkYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRfEFDFETMMRIKINDRFEFPLE 224
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 438 LSMAPYsfVQPHLNSQAGTPWGSTMSLYssslpmnngvgggegfgtmfpknLYRLLAVVVHSGEANSGHFVTYRRGSLRN 517
Cdd:cd02659 225 LDMEPY--TEKGLAKKEGDSEKKDSESY-----------------------IYELHGVLVHSGDAHGGHYYSYIKDRDDG 279
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....
gi 18858101 518 ahRWYYTSDTIVREVSIDEVL--------------SVP--------AYLLFYDR 549
Cdd:cd02659 280 --KWYKFNDDVVTPFDPNDAEeecfggeetqktydSGPrafkrttnAYMLFYER 331
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
318-531 5.05e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 73.22  E-value: 5.05e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 318 SNMMPSQvahpFQGAMGAQIVCNGCGSKSAVRyDKFDSITLNLppqrRTGLSLGHLLSEYITSEDLSDVK---CDSCNET 394
Cdd:cd02668 115 KNIVQDL----FRGEYSYVTQCSKCGRESSLP-SKFYELELQL----KGHKTLEECIDEFLKEEQLTGDNqyfCESCNSK 185
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 395 TTHTKSVTFAKLPACLCIHVARTVWLP-TGQVCKRKDYVHFPESLSMAPYSFVQPHLNSqagtpwgstmslyssslpmnn 473
Cdd:cd02668 186 TDATRRIRLTTLPPTLNFQLLRFVFDRkTGAKKKLNASISFPEILDMGEYLAESDEGSY--------------------- 244
                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18858101 474 gvgggegfgtmfpknLYRLLAVVVHSG-EANSGHFVTyrrgSLRNAHR--WYYTSDTIVRE 531
Cdd:cd02668 245 ---------------VYELSGVLIHQGvSAYSGHYIA----HIKDEQTgeWYKFNDEDVEE 286
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
490-548 1.01e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 59.08  E-value: 1.01e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18858101 490 YRLLAVVVHSGEA-NSGHFVTYRRgSLRNAHRWYYTSDTIVREVSIDEVL---SVPAYLLFYD 548
Cdd:cd02673 184 YSLVAVICHLGESpYDGHYIAYTK-ELYNGSSWLYCSDDEIRPVSKNDVStnaRSSGYLIFYD 245
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
276-547 3.05e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 55.58  E-value: 3.05e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 276 RSSRPR--LPQSQQQQDEGLnrrvsssCRSLERLHrgpgrvsiwsnmmpSQVAHPFQGAMGAQIVCNGCGSKSAvRYDKF 353
Cdd:cd02664  69 EASRPPwfTPGSQQDCSEYL-------RYLLDRLH--------------TLIEKMFGGKLSTTIRCLNCNSTSA-RTERF 126
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 354 DSITLNLPpqrrtglSLGHLLSEYITSEDL---SDVKCDSCNETTTHTKSVTFAKLPACLCIHVARTVWLP-TGQVCKRK 429
Cdd:cd02664 127 RDLDLSFP-------SVQDLLNYFLSPEKLtgdNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQkTHVREKIM 199
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 430 DYVHFPESLSMapysfvqphlnsqagtPWGSTMSLYSSSLPMNNGVGGGEGFGTMFPKNlYRLLAVVVHSG-EANSGHFV 508
Cdd:cd02664 200 DNVSINEVLSL----------------PVRVESKSSESPLEKKEEESGDDGELVTRQVH-YRLYAVVVHSGySSESGHYF 262
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 18858101 509 TYRR---GSLRNAHR---------------WYYTSDTIVREVS---IDEVLSVP----AYLLFY 547
Cdd:cd02664 263 TYARdqtDADSTGQEcpepkdaeendesknWYLFNDSRVTFSSfesVQNVTSRFpkdtPYILFY 326
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
368-549 5.23e-08

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 56.04  E-value: 5.23e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 368 LSLGHLLSEYITSEDL--SD-VKCDSCNETTTHTKSVTFAKLPACLCIHVARTVWLPTGQVcKRKDYVHFPES---LSMA 441
Cdd:COG5560 675 ITLQDCLNEFSKPEQLglSDsWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRD-KIDDLVEYPIDdldLSGV 753
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 442 PYSFVQPHLnsqagtpwgstmslyssslpmnngvgggegfgtmfpknLYRLLAVVVHSGEANSGHFVTYRRGSLRNahRW 521
Cdd:COG5560 754 EYMVDDPRL--------------------------------------IYDLYAVDNHYGGLSGGHYTAYARNFANN--GW 793
                       170       180
                ....*....|....*....|....*...
gi 18858101 522 YYTSDTIVREVSIDEVLSVPAYLLFYDR 549
Cdd:COG5560 794 YLFDDSRITEVDPEDSVTSSAYVLFYRR 821
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
329-547 3.91e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 51.94  E-value: 3.91e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 329 FQGAMGAQIVCNGCGSksaVRYDKFDSITLNLPPQRRTGLSLGHLLSEYI-----------TSEDLSDVKCDSCNETTTH 397
Cdd:cd02658 130 FKFMIEDRLECLSCKK---VKYTSELSEILSLPVPKDEATEKEEGELVYEpvpledclkayFAPETIEDFCSTCKEKTTA 206
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 398 TKSVTFAKLPACLCIHVARTVWLPTGQVCKRKDYVHFPESLSMAPysfvqphlnsqagtpwgstmslyssslpmnngvgg 477
Cdd:cd02658 207 TKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEELGPGK----------------------------------- 251
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18858101 478 gegfgtmfpknlYRLLAVVVHSG-EANSGHFVTYRRGSLRNAHRWYYTSDTIVREVSIDEVLSVPAYLLFY 547
Cdd:cd02658 252 ------------YELIAFISHKGtSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFY 310
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
485-547 3.27e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 48.32  E-value: 3.27e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18858101 485 FPKNL----YRLLAVVVHSGEANSGHFVTYRRGslRNAHRWYYTSDTIVREVSIDEVLS--------VPAYLLFY 547
Cdd:cd02665 155 FPQIIqqvpYELHAVLVHEGQANAGHYWAYIYK--QSRQEWEKYNDISVTESSWEEVERdsfgggrnPSAYCLMY 227
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
490-538 4.51e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 49.03  E-value: 4.51e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 18858101 490 YRLLAVVVHSGEANSGHFVTYRRGSLRNAHRWYYtsDTIVREVSIDEVL 538
Cdd:cd02666 281 YRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYN--DETVTVVPASEVF 327
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
490-549 6.45e-06

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 48.26  E-value: 6.45e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18858101 490 YRLLAVVVHSGEANSGHFVTYRRgslRNAHrWYYTSDTIVREVSIDEVLSVP---AYLLFYDR 549
Cdd:COG5533 225 YDLVGFVLHQGSLEGGHYIAYVK---KGGK-WEKANDSDVTPVSEEEAINEKaknAYLYFYER 283
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
374-538 1.17e-05

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 48.33  E-value: 1.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101  374 LSEYITSEDLSDvkcDSCNETTTH-----TKSVTFAKLPACLCIHVAR-TVWLPTGQVCKRKDYVHFPESLSMAPYsfvq 447
Cdd:COG5077  344 FRRYIQVETLDG---DNRYNAEKHglqdaKKGVIFESLPPVLHLQLKRfEYDFERDMMVKINDRYEFPLEIDLLPF---- 416
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101  448 phlnsqagtpwgstmsLYSSSLPMNNGVGGgegfgtmfpknlYRLLAVVVHSGEANSGHFVTYRRGSLRNahRWYYTSDT 527
Cdd:COG5077  417 ----------------LDRDADKSENSDAV------------YVLYGVLVHSGDLHEGHYYALLKPEKDG--RWYKFDDT 466
                        170
                 ....*....|.
gi 18858101  528 IVREVSIDEVL 538
Cdd:COG5077  467 RVTRATEKEVL 477
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
39-139 2.45e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 46.42  E-value: 2.45e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101  39 AGLHNFGLTCFLNTLLQAMAACPQFIAWLQLYNNASPDRKSLITSMLNTLEVVNGTHATLRGDpyspgavlRALNALGWV 118
Cdd:cd02671  25 VGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLQSSFLLNPEKYNDELANQAPR--------RLLNALREV 96
                        90       100
                ....*....|....*....|....*
gi 18858101 119 IPQEE----HDAHELFHVLLTCLEE 139
Cdd:cd02671  97 NPMYEgylqHDAQEVLQCILGNIQE 121
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
388-547 2.06e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 43.73  E-value: 2.06e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 388 CDSCNETTTHTKSVTFAKLPACLCIHVARtvwlptgqvckrkdyvhFPESLSMAPYSFVQPHLNSQAGTPWgsTMSLYSS 467
Cdd:cd02671 203 CENCHHYTEAERSLLFDKLPEVITIHLKC-----------------FAANGSEFDCYGGLSKVNTPLLTPL--KLSLEEW 263
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101 468 SlpmnngvgggegfgTMFPKNLYRLLAVVVHSG-EANSGHFVTYRrgslrnahRWYYTSDTIVR---EVSIDEVLS---- 539
Cdd:cd02671 264 S--------------TKPKNDVYRLFAVVMHSGaTISSGHYTAYV--------RWLLFDDSEVKvteEKDFLEALSpnts 321
                       170
                ....*....|
gi 18858101 540 --VPAYLLFY 547
Cdd:cd02671 322 stSTPYLLFY 331
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
40-150 1.76e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 40.78  E-value: 1.76e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101  40 GLHNFGLTCFLNTLLQAMAACPQFIAWLQLYNNASPDR----KSLITSMLNTLEVVNGTHatlrgDPYSPGAVlraLNAL 115
Cdd:cd02657   1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGAnqssDNLTNALRDLFDTMDKKQ-----EPVPPIEF---LQLL 72
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 18858101 116 GWVIPQ----------EEHDAHE----LFHVLLTCLEEEAIRPQPLGCL 150
Cdd:cd02657  73 RMAFPQfaekqnqggyAQQDAEEcwsqLLSVLSQKLPGAGSKGSFIDQL 121
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
304-422 2.02e-03

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 40.33  E-value: 2.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18858101   304 LERLHRGPGRVSIWSNMMPSQVAHPFQGAMGAQIVCNGCGSKSaVRYDKFDSITLNLPPQ------RRTGLSLGHLLSEY 377
Cdd:pfam13423 107 LDQLSSEENSTPPNPSPAESPLEQLFGIDAETTIRCSNCGHES-VRESSTHVLDLIYPRKpssnnkKPPNQTFSSILKSS 185
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 18858101   378 ITSEDLSDVKCDSCNETTTHTKSVTFAKLPACLCIHVART-----------VWLPT 422
Cdd:pfam13423 186 LERETTTKAWCEKCKRYQPLESRRTVRNLPPVLSLNAALTneewrqlwktpGWLPP 241
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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