|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
255-506 |
4.30e-23 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 99.03 E-value: 4.30e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 255 FEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGL 334
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 335 QNNAVRMlcnwltvhpkYQHLVAAHPELQAEGTSLASSLIGPSKLRDLQQIYLEAVRQHPSEVDAEVQdaLGVLYNLSGE 414
Cdd:COG2956 92 LDRAEEL----------LEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCE--LAELYLEQGD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 415 FDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTAL 494
Cdd:COG2956 160 YDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL 239
|
250
....*....|..
gi 24639189 495 TMQAHTNAAREL 506
Cdd:COG2956 240 ELDPSDDLLLAL 251
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
281-513 |
5.65e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 89.30 E-value: 5.65e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 281 QPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVRMlcnwltvhpkyqhlvaahp 360
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALAD------------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 361 elqaegtslassligpsklrdlqqiYLEAVRQHPSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLG 440
Cdd:COG0457 65 -------------------------YEQALELDPD--DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24639189 441 ASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALTMQAHTNAARELPNAAMAA 513
Cdd:COG0457 118 LALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALAL 190
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
288-504 |
2.10e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 91.98 E-value: 2.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 288 WQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVRMLCNWLTVHPKYQHLvAAHPELQAEGT 367
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAA-AALLLLAALLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 368 SLASSLIGPSKLRDLQQIYLEAVRQHPSEVDAEVQdaLGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGS 447
Cdd:COG3914 83 LAALLLQALGRYEEALALYRRALALNPDNAEALFN--LGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 24639189 448 RSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALTMQAHTNAAR 504
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
231-497 |
2.12e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 88.25 E-value: 2.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 231 NDNMDAYKEY-EFAEGNPmSDVENPFEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALK 309
Cdd:COG2956 22 GQPDKAIDLLeEALELDP-ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 310 RAYDLQPDNQQVLMALAACYTNEGLQNNAVRMlcnwltvhpkYQHLVAAHPELQAEGTSLASSLIGPSKLRDLQQIYLEA 389
Cdd:COG2956 101 KLLELDPDDAEALRLLAEIYEQEGDWEKAIEV----------LERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 390 VRQHPSEVDAevQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGfIRV 469
Cdd:COG2956 171 LKLDPDCARA--LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDL 247
|
250 260
....*....|....*....|....*...
gi 24639189 470 RYNVGVCCMNLKAYKEAVEHLLTALTMQ 497
Cdd:COG2956 248 LLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
288-525 |
2.84e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 87.86 E-value: 2.84e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 288 WQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVRMlcnwltvhpkYQHLVAAHPELQAEGT 367
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRI----------HQKLLERDPDRAEALL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 368 SLASSLIGPSKLRDLQQIYLEAVRQHPSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGS 447
Cdd:COG2956 81 ELAQDYLKAGLLDRAEELLEKLLELDPD--DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24639189 448 RSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALTMQAHTNAARELpnaaMAATFRGQNQMSESI 525
Cdd:COG2956 159 DYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPR----LAELYEKLGDPEEAL 232
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
388-513 |
1.25e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 76.58 E-value: 1.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 388 EAVRQHPSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFI 467
Cdd:COG4235 8 QALAANPN--DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 24639189 468 RVRYNVGVCCMNLKAYKEAVEHLLTALTmQAHTNAARELPNAAMAA 513
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQKLLA-LLPADAPARLLEASIAE 130
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
270-472 |
2.32e-16 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 82.35 E-value: 2.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 270 AVLCFEVAAKKQPERAEVWQLLGtSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVRMLCNWLTVH 349
Cdd:COG3914 20 AAAAAELALAAELEAAALAAALG-LALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEAL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 350 PKYQHLVAAHPELQAEGTSLASSLIGPSKLRDLQQIYLEAVRQHPSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVD 429
Cdd:COG3914 99 ALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD--FAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 24639189 430 PQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYN 472
Cdd:COG3914 177 PDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSN 219
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
261-463 |
1.46e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 76.58 E-value: 1.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 261 YLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVR 340
Cdd:COG0457 18 YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 341 MlcnwltvhpkyqhlvaahpelqaegtslassligpsklrdlqqiYLEAVRQHPSevDAEVQDALGVLYNLSGEFDKAVD 420
Cdd:COG0457 98 D--------------------------------------------YDKALELDPD--DAEALYNLGLALLELGRYDEAIE 131
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 24639189 421 CYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQ 463
Cdd:COG0457 132 AYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
210-464 |
1.70e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.10 E-value: 1.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 210 RLQDEWQKLADENEHPWLseyndNMDAYKEYEFAEGNPMSDVENPFEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQ 289
Cdd:COG3914 42 GLALLLLAALAEAAAAAL-----LALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALF 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 290 LLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVrmlcnwltvhpkyqhlvaahpelqaegtsl 369
Cdd:COG3914 117 NLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAI------------------------------ 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 370 assligpsklrdlqQIYLEAVRQHPSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRL--GASLANGS 447
Cdd:COG3914 167 --------------AALRRALELDPD--NAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLlfALRQACDW 230
|
250
....*....|....*..
gi 24639189 448 RSVEAVEAYQQALQLQP 464
Cdd:COG3914 231 EVYDRFEELLAALARGP 247
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
250-494 |
1.93e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 73.19 E-value: 1.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 250 DVENPFEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACY 329
Cdd:TIGR02917 21 SPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 330 TNEGLQNNAVRMLcnwltvhPKYQHLVAahpELQAEGTSLAS-SLIGPSKLRDLQQIYLEAVRQHPSEVDAEVqdALGVL 408
Cdd:TIGR02917 101 LLQGKFQQVLDEL-------PGKTLLDD---EGAAELLALRGlAYLGLGQLELAQKSYEQALAIDPRSLYAKL--GLAQL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 409 YNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVE 488
Cdd:TIGR02917 169 ALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEK 248
|
....*.
gi 24639189 489 HLLTAL 494
Cdd:TIGR02917 249 HADALL 254
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
261-513 |
9.60e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 71.27 E-value: 9.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 261 YLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVR 340
Cdd:TIGR02917 577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT 656
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 341 MLCNWLTVHPKYQ--HLVAAHPELQAEGTSLASSLIgpsklRDLQQiyleavrQHPSevDAEVQDALGVLYNLSGEFDKA 418
Cdd:TIGR02917 657 SLKRALELKPDNTeaQIGLAQLLLAAKRTESAKKIA-----KSLQK-------QHPK--AALGFELEGDLYLRQKDYPAA 722
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 419 VDCYQSALQVDPQNAKTWNRLGASLANGsRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALtmQA 498
Cdd:TIGR02917 723 IQAYRKALKRAPSSQNAIKLHRALLASG-NTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVV--KK 799
|
250
....*....|....*
gi 24639189 499 HTNAARELPNAAMAA 513
Cdd:TIGR02917 800 APDNAVVLNNLAWLY 814
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
398-497 |
1.81e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.83 E-value: 1.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 398 DAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCC 477
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100
....*....|....*....|
gi 24639189 478 MNLKAYKEAVEHLLTALTMQ 497
Cdd:COG4783 83 LKAGDYDEALALLEKALKLD 102
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
378-494 |
2.31e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.44 E-value: 2.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 378 KLRDLQQIYLEAVRQHPSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQ 457
Cdd:COG4783 19 DYDEAEALLEKALELDPD--NPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLE 96
|
90 100 110
....*....|....*....|....*....|....*..
gi 24639189 458 QALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTAL 494
Cdd:COG4783 97 KALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
352-494 |
2.52e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 64.98 E-value: 2.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 352 YQHLVAAHPELQAEGTSLASSLIGPSKLRDLQQIYLEAVRQHPSEVDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQ 431
Cdd:COG5010 7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24639189 432 NAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTAL 494
Cdd:COG5010 87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRAL 149
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
405-494 |
4.51e-12 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 65.71 E-value: 4.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 405 LGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYK 484
Cdd:COG4785 79 RGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYE 158
|
90
....*....|
gi 24639189 485 EAVEHLLTAL 494
Cdd:COG4785 159 LAIADLEKAL 168
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
408-498 |
1.24e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.95 E-value: 1.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 408 LYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAvEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAV 487
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 24639189 488 EHLLTALTMQA 498
Cdd:COG3063 80 AYLERALELDP 90
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
283-466 |
3.16e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 61.36 E-value: 3.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 283 ERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVRMlcnwltvhpkyqhlvaahpel 362
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVL--------------------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 363 qaegtslassligpsklrdlqqiYLEAVRQHPSEvdAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGAS 442
Cdd:COG4783 61 -----------------------LHEALELDPDE--PEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARA 115
|
170 180
....*....|....*....|....
gi 24639189 443 LANGSRSVEAVEAYQQALQLQPGF 466
Cdd:COG4783 116 YRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
257-495 |
3.35e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 66.26 E-value: 3.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 257 KGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQN 336
Cdd:TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 337 NAVRMLCNWLTVHPKY------------------QHLVAAHPELQAEGTS-----LASSLIGPSKLRDLQQIYLEAVRQH 393
Cdd:TIGR02917 687 SAKKIAKSLQKQHPKAalgfelegdlylrqkdypAAIQAYRKALKRAPSSqnaikLHRALLASGNTAEAVKTLEAWLKTH 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 394 PSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSvEAVEAYQQALQLQPGFIRVRYNV 473
Cdd:TIGR02917 767 PN--DAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDP-RALEYAERALKLAPNIPAILDTL 843
|
250 260
....*....|....*....|..
gi 24639189 474 GVCCMNLKAYKEAVEHLLTALT 495
Cdd:TIGR02917 844 GWLLVEKGEADRALPLLRKAVN 865
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
261-473 |
3.98e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 65.88 E-value: 3.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 261 YLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPdNQQVLMALAACYTNEGLQNNAVR 340
Cdd:TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP-SSQNAIKLHRALLASGNTAEAVK 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 341 MLCNWLTVHPKyqHLVAAhpelqaegTSLASSLIGPSKLRDLQQIYLEAVRQHPSevDAEVQDALGVLYnLSGEFDKAVD 420
Cdd:TIGR02917 758 TLEAWLKTHPN--DAVLR--------TALAELYLAQKDYDKAIKHYQTVVKKAPD--NAVVLNNLAWLY-LELKDPRALE 824
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 24639189 421 CYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNV 473
Cdd:TIGR02917 825 YAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
417-529 |
1.31e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 59.25 E-value: 1.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 417 KAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALTM 496
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|...
gi 24639189 497 QAHTNAARELpnAAMAATFRGQNQMSESIWSTL 529
Cdd:COG4235 81 DPDNPEALYL--LGLAAFQQGDYAEAIAAWQKL 111
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
398-512 |
1.21e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 58.77 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 398 DAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCC 477
Cdd:COG4785 106 LAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAE 185
|
90 100 110
....*....|....*....|....*....|....*...
gi 24639189 478 MNL---KAYKEAVEHLLTALTMQAHTNAARELPNAAMA 512
Cdd:COG4785 186 RKLdpeKALALLLEDWATAYLLQGDTEEARELFKLALA 223
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
270-444 |
1.34e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 56.17 E-value: 1.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 270 AVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYtneglqnnavrmlcnwltvh 349
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL-------------------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 350 pkyqhlvaahpeLQAEGTSLAssligpsklrdlQQIYLEAVRQHPSEVDAevQDALGVLYNLSGEFDKAVDCYQSALQVD 429
Cdd:COG4235 62 ------------LAAGDTEEA------------EELLERALALDPDNPEA--LYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
170
....*....|....*
gi 24639189 430 PQNAKtWNRLGASLA 444
Cdd:COG4235 116 PADAP-ARLLEASIA 129
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
426-497 |
3.21e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 57.71 E-value: 3.21e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24639189 426 LQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALTMQ 497
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD 72
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
255-432 |
4.97e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.81 E-value: 4.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 255 FEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGL 334
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 335 QNNAVRMlcnwltvhpkYQHLVAAHPElqaegtslassligpsklrdlqqiyleavrqhpsevDAEVQDALGVLYNLSGE 414
Cdd:COG4783 88 YDEALAL----------LEKALKLDPE------------------------------------HPEAYLRLARAYRALGR 121
|
170
....*....|....*...
gi 24639189 415 FDKAVDCYQSALQVDPQN 432
Cdd:COG4783 122 PDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
250-333 |
9.06e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.86 E-value: 9.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 250 DVENPFEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACY 329
Cdd:COG4235 16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAA 95
|
....
gi 24639189 330 TNEG 333
Cdd:COG4235 96 FQQG 99
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
384-464 |
1.52e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.20 E-value: 1.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 384 QIYLEAVRQHPSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQ 463
Cdd:COG5010 75 ALLEQALQLDPN--NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
.
gi 24639189 464 P 464
Cdd:COG5010 153 P 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
258-472 |
2.88e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 56.63 E-value: 2.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 258 GKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNN 337
Cdd:TIGR02917 302 GASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 338 AVRMLcnwltvhpkyQHLVAAHPELQAEGTSLASSLIGPSKLR----DLQQiyleAVRQHPSEVDAEVQDALGVLYnlSG 413
Cdd:TIGR02917 382 AAEYL----------AKATELDPENAAARTQLGISKLSQGDPSeaiaDLET----AAQLDPELGRADLLLILSYLR--SG 445
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 24639189 414 EFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYN 472
Cdd:TIGR02917 446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAAN 504
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
261-394 |
6.48e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 55.38 E-value: 6.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 261 YLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYtneglqnnavR 340
Cdd:COG3914 156 LRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL----------R 225
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 24639189 341 MLCNW--LTVHPKYQHLVAAHPELQAEGTSLASSLIGPSKLRDLQQIYLEAVRQHP 394
Cdd:COG3914 226 QACDWevYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAAA 281
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
399-513 |
1.48e-07 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 52.72 E-value: 1.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 399 AEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCM 478
Cdd:TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110
|
90 100 110
....*....|....*....|....*....|....*
gi 24639189 479 NLKAYKEAVEHLLTALTMQAHTNAARELPNAAMAA 513
Cdd:TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
198-350 |
5.04e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.57 E-value: 5.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 198 QTAANFNEKFWERLQDEWQKLADENEHPWLSEYNDNMDAYKEYEFAEGNPMSDVENPFEKGKEYLSKGDIPSAVLCFEVA 277
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24639189 278 AKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVRMLCNWLTVHP 350
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
306-465 |
2.24e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 49.91 E-value: 2.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 306 AALKRAYDLQPDNQQ----VLMALAACYTNEGLQNNAVRMLCNWLTVHPkYQHLVAAHPELQaegtslassligPSKLRD 381
Cdd:COG3071 176 EALKALWKALPRAERrdpeLAAAYARALIALGDHDEAERLLREALKRQW-DPRLVRLYGRLQ------------GGDPAK 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 382 LQQIYLEAVRQHPSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPqNAKTWNRLGASLANGSRSVEAVEAYQQALQ 461
Cdd:COG3071 243 QLKRAEKWLKKHPN--DPDLLLALGRLCLRNQLWGKAREYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKALA 319
|
....
gi 24639189 462 LQPG 465
Cdd:COG3071 320 LALG 323
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
261-351 |
3.82e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.55 E-value: 3.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 261 YLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIaALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVR 340
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 24639189 341 MLCNWLTVHPK 351
Cdd:COG3063 81 YLERALELDPS 91
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
302-508 |
7.02e-06 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 49.31 E-value: 7.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 302 PQAIAALKRAYDLQPDNQQVLMALAACYTNEG----------------------------------LQNNAVRMLCNWLT 347
Cdd:PRK11447 164 PEAINQLQRLNADYPGNTGLRNTLALLLFSSGrrdegfavleqmakspagrdaaaqlwygqikdmpVSDASVAALQKYLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 348 VHPKYQHLVAAHPELQ--------------AEGTSLASSLIGPSKLRDLQQiyleAVRQHPSevDAEVQDALGVLYNLSG 413
Cdd:PRK11447 244 VFSDGDSVAAARSQLAeqqkqladpafrarAQGLAAVDSGQGGKAIPELQQ----AVRANPK--DSEALGALGQAYSQQG 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 414 EFDKAVDCYQSALQVDPQ--NAKTW------NRLGASLANGSRSVE------AVEAYQQALQLQPGFIRVRYNVGVCCMN 479
Cdd:PRK11447 318 DRARAVAQFEKALALDPHssNRDKWesllkvNRYWLLIQQGDAALKannlaqAERLYQQARQVDNTDSYAVLGLGDVAMA 397
|
250 260 270
....*....|....*....|....*....|
gi 24639189 480 LKAYKEAVEHLLTALTMQ-AHTNAARELPN 508
Cdd:PRK11447 398 RKDYAAAERYYQQALRMDpGNTNAVRGLAN 427
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
256-513 |
8.23e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.93 E-value: 8.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 256 EKGKEYLSKGDIPSAVLCFEVAAKKQPE--RAEVWQLLGTSQTeNEMDpQAIAALKRAYDLQPDNQQVLMALAACYTNEG 333
Cdd:TIGR02917 402 QLGISKLSQGDPSEAIADLETAAQLDPElgRADLLLILSYLRS-GQFD-KALAAAKKLEKKQPDNASLHNLLGAIYLGKG 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 334 LQNNAVRMLCNWLTVHP------------------------KYQHLVAAHPELQAEGTSLASSLIGPSKLRDLQQIYLEA 389
Cdd:TIGR02917 480 DLAKAREAFEKALSIEPdffpaaanlaridiqegnpddaiqRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKA 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 390 VRQHPSEVDAEVqdALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLG-ASLANGSrSVEAVEAYQQALQLQPGFIR 468
Cdd:TIGR02917 560 AELNPQEIEPAL--ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGrAQLAAGD-LNKAVSSFKKLLALQPDSAL 636
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 24639189 469 VRYNVGVCCMNLKAYKEAVEHLLTALTMQAH-TNAARELPNAAMAA 513
Cdd:TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELKPDnTEAQIGLAQLLLAA 682
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
255-427 |
1.37e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 46.45 E-value: 1.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 255 FEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGL 334
Cdd:COG4785 77 YERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGR 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 335 QNNAVRmlcnWLTVHPKYQhlvaahpelqaegtslassligPSKLRDLQQIYLEAVRQHPSEVDAEVQDALGVLYNLSGE 414
Cdd:COG4785 157 YELAIA----DLEKALELD----------------------PNDPERALWLYLAERKLDPEKALALLLEDWATAYLLQGD 210
|
170
....*....|...
gi 24639189 415 FDKAVDCYQSALQ 427
Cdd:COG4785 211 TEEARELFKLALA 223
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
255-420 |
2.53e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.77 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 255 FEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGL 334
Cdd:COG0457 80 NNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 335 QNNAVRMLCNWLTVHPKYQHLVAAHPELQAEGTSLASSLIGPSKLRDLQQIYLEAVRQHPSEVDAEVQDALGVLYNLSGE 414
Cdd:COG0457 160 YEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239
|
....*.
gi 24639189 415 FDKAVD 420
Cdd:COG0457 240 LYQYRA 245
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
405-432 |
3.02e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.87 E-value: 3.02e-05
10 20
....*....|....*....|....*...
gi 24639189 405 LGVLYNLSGEFDKAVDCYQSALQVDPQN 432
Cdd:pfam00515 7 LGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
425-526 |
5.86e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.80 E-value: 5.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 425 ALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALTMQAHTNAAR 504
Cdd:COG5010 46 GRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAY 125
|
90 100
....*....|....*....|..
gi 24639189 505 ElpNAAMAATFRGQNQMSESIW 526
Cdd:COG5010 126 S--NLAALLLSLGQDDEAKAAL 145
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
256-462 |
7.40e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 44.93 E-value: 7.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 256 EKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQV-LMALA-ACYTNEG 333
Cdd:cd24142 5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEkYLYLGqLSGGEEA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 334 LQ--NNAVRMLCNWLTVHPKYQHLVAAhpELQAEGTSLASSLIGpsklrdLQQIYLEAVRQHPsevDAEvqdalgvlynl 411
Cdd:cd24142 85 LQyyEKGIEILEEELQALQAASAEAEE--EAEELKRKLSSALCA------LAEIYMTDLCDEP---DAE----------- 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 24639189 412 sgefDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQL 462
Cdd:cd24142 143 ----QRCEELITKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
405-432 |
7.62e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.74 E-value: 7.62e-05
10 20
....*....|....*....|....*...
gi 24639189 405 LGVLYNLSGEFDKAVDCYQSALQVDPQN 432
Cdd:smart00028 7 LGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
412-505 |
1.09e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 41.90 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 412 SGEFDKAVDCYQSALQVDPQNAKTWN---RLGASLANGSRSVEAVEAYQQALQLQPGFIRV---RYNVGVCCMNLKAYKE 485
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNSPLAPDalyWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDYDK 85
|
90 100
....*....|....*....|
gi 24639189 486 AVEHLLTALTMQAHTNAARE 505
Cdd:COG1729 86 ARATLEELIKKYPDSEAAKE 105
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
422-494 |
1.31e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 43.37 E-value: 1.31e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24639189 422 YQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTAL 494
Cdd:COG4785 62 RIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134
|
|
| LcrH_SycD |
TIGR02552 |
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ... |
396-498 |
1.57e-04 |
|
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 41.90 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 396 EVDAEVQDAL-GVLYNL--SGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYN 472
Cdd:TIGR02552 11 GLDSEQLEQIyALAYNLyqQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90
|
90 100
....*....|....*....|....*.
gi 24639189 473 VGVCCMNLKAYKEAVEHLLTALTMQA 498
Cdd:TIGR02552 91 AAECLLALGEPESALKALDLAIEICG 116
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
406-445 |
1.89e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.99 E-value: 1.89e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 24639189 406 GVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLAN 445
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
399-462 |
4.38e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.91 E-value: 4.38e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24639189 399 AEVQDALGVLYNLSGEFDKAVDCYQSALQV--------DPQNAKTWNRLGASLANGSRSVEAVEAYQQALQL 462
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
210-349 |
4.38e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.41 E-value: 4.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 210 RLQDEWQKLADENEHPW------LSEYNDNMDAYKEYEFA-EGNPmSDVENPFEKGKEYLSKGDIPSAVLCFEVAAKKQP 282
Cdd:COG2956 131 EVLERLLKLGPENAHAYcelaelYLEQGDYDEAIEALEKAlKLDP-DCARALLLLAELYLEQGDYEEAIAALERALEQDP 209
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24639189 283 ERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNqQVLMALAACYTNEGLQNNAVRMLCNWLTVH 349
Cdd:COG2956 210 DYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
433-466 |
1.04e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 1.04e-03
10 20 30
....*....|....*....|....*....|....
gi 24639189 433 AKTWNRLGASLANGSRSVEAVEAYQQALQLQPGF 466
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_hemY_coli |
TIGR00540 |
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ... |
261-459 |
2.78e-03 |
|
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]
Pssm-ID: 273126 [Multi-domain] Cd Length: 367 Bit Score: 40.35 E-value: 2.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 261 YLSKGDIPSAVLCFEVAAKKQ---PERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPD----NQQVLMALAACYTNEG 333
Cdd:TIGR00540 178 YQRSGNWDALLKLLPALRKAKalsPEEAARLEQQAYIGLLDEAREEDADALKTWWKQLPRaerqEPELAVAAAEALIQLG 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 334 LQNNAVRMLCNWLTVHPkYQHLVAAHPELQaegtslassligPSKLRDLQQIYLEAVRQHPseVDAEVQDALGVLYNLSG 413
Cdd:TIGR00540 258 DHDEAEKLIEEALKKEW-DPELLRLYGRLQ------------PGDPSPLIKRAEKWLKKHP--DDALLLLALGRLCLRQQ 322
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 24639189 414 EFDKAVDCYQSALQVDPQnAKTWNRLGASLANGSRSVEAVEAYQQA 459
Cdd:TIGR00540 323 LWGKAQSYLEASLSLAPT-EEAHLELAQLFEQLGDTEAAAQHYRKS 367
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
412-464 |
3.16e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 39.92 E-value: 3.16e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 24639189 412 SGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQP 464
Cdd:cd24142 13 QGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP 65
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
384-465 |
6.62e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.51 E-value: 6.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639189 384 QIYLEAVRQHP-SEVDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWN---RLGASLANGSRSVEAVEAYQQA 459
Cdd:COG1729 14 AAFKAFLKRYPnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELGDYDKARATLEEL 93
|
....*.
gi 24639189 460 LQLQPG 465
Cdd:COG1729 94 IKKYPD 99
|
|
| |
