NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|18421904|ref|NP_568570|]
View 

homeobox protein 23 [Arabidopsis thaliana]

Protein Classification

ZF-HD_dimer and homeo_ZF_HD domain-containing protein( domain architecture ID 10521152)

ZF-HD_dimer and homeo_ZF_HD domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ZF-HD_dimer pfam04770
ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, ...
 56-109 2.58e-26

ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, and have been named ZF-HD for zinc finger homeodomain proteins, on the basis of similarity to proteins of known structure. This region is thought to be involved in the formation of homo and heterodimers, and may form a zinc finger.


:

Pssm-ID: 398439  Cd Length: 55  Bit Score: 98.86  E-value: 2.58e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 18421904    56 YKECLKNHAAALGGHALDGCGEFMpsPSSISSDPTSLKCAACGCHRNFHRRDPD 109
Cdd:pfam04770   4 YRECLRNHAASIGGHAVDGCGEFM--PSGEEGTPEALKCAACGCHRNFHRREIE 55
homeo_ZF_HD super family cl22771
homeobox domain, ZF-HD class; This model represents a class of homoebox domain that differs ...
 200-256 9.05e-23

homeobox domain, ZF-HD class; This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam00046. It is found in both C4 and C3 plants.


The actual alignment was detected with superfamily member TIGR01565:

Pssm-ID: 130628  Cd Length: 58  Bit Score: 89.54  E-value: 9.05e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18421904   200 RKRFRTKFSQFQKEKMHEFAERVGWKMQKRDEDDVRDFCRQIGVDKSVLKVWMHNNK 256
Cdd:TIGR01565   1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57
 
Name Accession Description Interval E-value
ZF-HD_dimer pfam04770
ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, ...
 56-109 2.58e-26

ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, and have been named ZF-HD for zinc finger homeodomain proteins, on the basis of similarity to proteins of known structure. This region is thought to be involved in the formation of homo and heterodimers, and may form a zinc finger.


Pssm-ID: 398439  Cd Length: 55  Bit Score: 98.86  E-value: 2.58e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 18421904    56 YKECLKNHAAALGGHALDGCGEFMpsPSSISSDPTSLKCAACGCHRNFHRRDPD 109
Cdd:pfam04770   4 YRECLRNHAASIGGHAVDGCGEFM--PSGEEGTPEALKCAACGCHRNFHRREIE 55
homeo_ZF_HD TIGR01565
homeobox domain, ZF-HD class; This model represents a class of homoebox domain that differs ...
 200-256 9.05e-23

homeobox domain, ZF-HD class; This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam00046. It is found in both C4 and C3 plants.


Pssm-ID: 130628  Cd Length: 58  Bit Score: 89.54  E-value: 9.05e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18421904   200 RKRFRTKFSQFQKEKMHEFAERVGWKMQKRDEDDVRDFCRQIGVDKSVLKVWMHNNK 256
Cdd:TIGR01565   1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57
ZF_HD_prot_N TIGR01566
ZF-HD homeobox protein Cys/His-rich dimerization domain; This model describes a 54-residue ...
 55-108 5.49e-22

ZF-HD homeobox protein Cys/His-rich dimerization domain; This model describes a 54-residue domain found in the N-terminal region of plant proteins, the vast majority of which contain a ZF-HD class homeobox domain toward the C-terminus. The region between the two domains typically is rich in low complexity sequence. The companion ZF-HD homeobox domain is described in model TIGR01565.


Pssm-ID: 130629  Cd Length: 53  Bit Score: 87.22  E-value: 5.49e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 18421904    55 TYKECLKNHAAALGGHALDGCGEFMpSPSSISSDPTSLKCAACGCHRNFHRRDP 108
Cdd:TIGR01566   1 LYKECLKNHAASIGGHALDGCGEFM-PSSGEEGDPESLTCAACGCHRNFHRKEP 53
 
Name Accession Description Interval E-value
ZF-HD_dimer pfam04770
ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, ...
 56-109 2.58e-26

ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, and have been named ZF-HD for zinc finger homeodomain proteins, on the basis of similarity to proteins of known structure. This region is thought to be involved in the formation of homo and heterodimers, and may form a zinc finger.


Pssm-ID: 398439  Cd Length: 55  Bit Score: 98.86  E-value: 2.58e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 18421904    56 YKECLKNHAAALGGHALDGCGEFMpsPSSISSDPTSLKCAACGCHRNFHRRDPD 109
Cdd:pfam04770   4 YRECLRNHAASIGGHAVDGCGEFM--PSGEEGTPEALKCAACGCHRNFHRREIE 55
homeo_ZF_HD TIGR01565
homeobox domain, ZF-HD class; This model represents a class of homoebox domain that differs ...
 200-256 9.05e-23

homeobox domain, ZF-HD class; This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam00046. It is found in both C4 and C3 plants.


Pssm-ID: 130628  Cd Length: 58  Bit Score: 89.54  E-value: 9.05e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18421904   200 RKRFRTKFSQFQKEKMHEFAERVGWKMQKRDEDDVRDFCRQIGVDKSVLKVWMHNNK 256
Cdd:TIGR01565   1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57
ZF_HD_prot_N TIGR01566
ZF-HD homeobox protein Cys/His-rich dimerization domain; This model describes a 54-residue ...
 55-108 5.49e-22

ZF-HD homeobox protein Cys/His-rich dimerization domain; This model describes a 54-residue domain found in the N-terminal region of plant proteins, the vast majority of which contain a ZF-HD class homeobox domain toward the C-terminus. The region between the two domains typically is rich in low complexity sequence. The companion ZF-HD homeobox domain is described in model TIGR01565.


Pssm-ID: 130629  Cd Length: 53  Bit Score: 87.22  E-value: 5.49e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 18421904    55 TYKECLKNHAAALGGHALDGCGEFMpSPSSISSDPTSLKCAACGCHRNFHRRDP 108
Cdd:TIGR01566   1 LYKECLKNHAASIGGHALDGCGEFM-PSSGEEGDPESLTCAACGCHRNFHRKEP 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH