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Conserved domains on  [gi|18420664|ref|NP_568429|]
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Nucleotidylyl transferase superfamily protein [Arabidopsis thaliana]

Protein Classification

FAD synthetase family protein( domain architecture ID 10114506)

FAD synthetase family protein containing only the N-terminal domain of a bifunctional enzyme such as Rhodococcus opacus putative bifunctional riboflavin kinase/FMN adenylyltransferase; may catalyze the the adenylation of FMN to FAD, but not the phosphorylation of riboflavin

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FAD_synthetase_N cd02064
FAD synthetase, N-terminal domain of the bifunctional enzyme; FAD synthetase_N. N-terminal ...
86-274 2.48e-42

FAD synthetase, N-terminal domain of the bifunctional enzyme; FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.


:

Pssm-ID: 185679 [Multi-domain]  Cd Length: 180  Bit Score: 145.38  E-value: 2.48e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664  86 IVALGKFDALHIGHRELAIQAARI-----GTPYLLSFVGL-AEVL-GWKPRAPIVAKCDRKRVLSSWASYCGNIapVEFE 158
Cdd:cd02064   2 VVAIGNFDGVHLGHQALIKTLKKIarergLPSAVLTFDPHpREVFlPDKAPPRLTTLEEKLELLESLGVDYLLV--LPFD 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664 159 IEFASvrhLNPQQFVEKLSRELRVCGVVAGENYRFGYRASGDASELVRLCKDFGISAYIINSVMDKNQVsvnteeedsks 238
Cdd:cd02064  80 KEFAS---LSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGER----------- 145
                       170       180       190
                ....*....|....*....|....*....|....*.
gi 18420664 239 kergqVSSTRVRHALAAGDVRYVTELLGRPHRVISR 274
Cdd:cd02064 146 -----VSSTRIREALAEGDVELANELLGRPYSIEGR 176
 
Name Accession Description Interval E-value
FAD_synthetase_N cd02064
FAD synthetase, N-terminal domain of the bifunctional enzyme; FAD synthetase_N. N-terminal ...
86-274 2.48e-42

FAD synthetase, N-terminal domain of the bifunctional enzyme; FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.


Pssm-ID: 185679 [Multi-domain]  Cd Length: 180  Bit Score: 145.38  E-value: 2.48e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664  86 IVALGKFDALHIGHRELAIQAARI-----GTPYLLSFVGL-AEVL-GWKPRAPIVAKCDRKRVLSSWASYCGNIapVEFE 158
Cdd:cd02064   2 VVAIGNFDGVHLGHQALIKTLKKIarergLPSAVLTFDPHpREVFlPDKAPPRLTTLEEKLELLESLGVDYLLV--LPFD 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664 159 IEFASvrhLNPQQFVEKLSRELRVCGVVAGENYRFGYRASGDASELVRLCKDFGISAYIINSVMDKNQVsvnteeedsks 238
Cdd:cd02064  80 KEFAS---LSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGER----------- 145
                       170       180       190
                ....*....|....*....|....*....|....*.
gi 18420664 239 kergqVSSTRVRHALAAGDVRYVTELLGRPHRVISR 274
Cdd:cd02064 146 -----VSSTRIREALAEGDVELANELLGRPYSIEGR 176
RibF COG0196
FAD synthase [Coenzyme transport and metabolism]; FAD synthase is part of the Pathway ...
84-314 3.07e-37

FAD synthase [Coenzyme transport and metabolism]; FAD synthase is part of the Pathway/BioSystem: Riboflavin/FAD biosynthesis


Pssm-ID: 439966 [Multi-domain]  Cd Length: 310  Bit Score: 135.94  E-value: 3.07e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664  84 GGIVALGKFDALHIGHREL---AIQAARI--GTPYLLSFVGL-AEVL-GWKPRAPIVAKCDRKRVLSSwasyCG--NIAP 154
Cdd:COG0196  16 GTVVTIGNFDGVHLGHQALiarLVELARElgLPSVVLTFEPHpREVFrPDKAPKLLTTLEEKLELLEE----LGvdYVLV 91
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664 155 VEFEIEFASvrhLNPQQFVEK-LSRELRVCGVVAGENYRFGYRASGDASELVRLCKDFGISAYIINSVMDKNQVsvntee 233
Cdd:COG0196  92 LPFTREFAA---LSPEEFVEEiLVDKLGAKHVVVGDDFRFGKGRAGDVELLRELGEEYGFEVEVVPPVTIDGER------ 162
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664 234 edskskergqVSSTRVRHALAAGDVRYVTELLGRPHRVISRTRTQDltsKRGR--------ISLQTSSLLnlpPGNGVYk 305
Cdd:COG0196 163 ----------VSSTRIREALAEGDVEEAAELLGRPYSISGRVVHGD---KRGRtlgfptanLALPEEKLL---PADGVY- 225

                ....*....
gi 18420664 306 ACSLIVGDK 314
Cdd:COG0196 226 AVRVRIDGR 234
PRK05627 PRK05627
bifunctional riboflavin kinase/FAD synthetase;
77-314 5.26e-31

bifunctional riboflavin kinase/FAD synthetase;


Pssm-ID: 235536 [Multi-domain]  Cd Length: 305  Bit Score: 119.10  E-value: 5.26e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664   77 EGLSPVAGGIVALGKFDALHIGHREL---AIQAARIG---------TPYLLSFVGLAevlgwKPRAPIVAKCDRKRVLSS 144
Cdd:PRK05627   7 HNIPQPPDCVLTIGNFDGVHRGHQALlarAREIARERglpsvvmtfEPHPREVFAPD-----KAPARLTPLRDKAELLAE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664  145 wasyCG-NIAPVE-FEIEFAsvrHLNPQQFVEKLSRE-LRVCGVVAGENYRFGYRASGDASELVRLCKDFGISAYIINSV 221
Cdd:PRK05627  82 ----LGvDYVLVLpFDEEFA---KLSAEEFIEDLLVKgLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEV 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664  222 MDKNQVsvnteeedskskergqVSSTRVRHALAAGDVRYVTELLGRPHRVISR-TRTQdltsKRGR------ISLQTSSl 294
Cdd:PRK05627 155 KEDGER----------------VSSTAIRQALAEGDLELANKLLGRPYSISGRvVHGQ----KLGRtlgfptANLPLPD- 213
                        250       260
                 ....*....|....*....|
gi 18420664  295 lNLPPGNGVYkACSLIVGDK 314
Cdd:PRK05627 214 -RVLPADGVY-AVRVKVDGK 231
FAD_syn pfam06574
FAD synthetase; This family corresponds to the N terminal domain of the bifunctional enzyme ...
84-248 4.43e-18

FAD synthetase; This family corresponds to the N terminal domain of the bifunctional enzyme riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin 5'-phospho transferase and ATP:FMN-adenylyltransferase activity. They catalyze the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD. This domain is thought to have the flavin mononucleotide (FMN) adenylyltransferase activity.


Pssm-ID: 429011 [Multi-domain]  Cd Length: 158  Bit Score: 80.30  E-value: 4.43e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664    84 GGIVALGKFDALHIGHRELAIQAARIGTPYLLSFVGL------AEVLGwKPRAP--IVAKCDRKRVLSSW---ASYCgni 152
Cdd:pfam06574   7 GCVVTIGNFDGVHLGHQALIAKAKEIARELGLPSVVVtfephpREVFN-PDSAPfrLTTLEEKIELLAELgvdYLLV--- 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664   153 apVEFEIEFASvrhLNPQQFVEKLSRE-LRVCGVVAGENYRFGYRASGDASELVRLCKDFGISAYIINSVmdknqvsvnt 231
Cdd:pfam06574  83 --LPFTKEFAS---LSAEEFIENVLVDgLNVKHVVVGFDFRFGKGRKGDVELLKELGAKLGFEVTIVPPV---------- 147
                         170
                  ....*....|....*..
gi 18420664   232 EEEDSKskergqVSSTR 248
Cdd:pfam06574 148 ELDGEK------ISSTR 158
ribF TIGR00083
riboflavin kinase/FMN adenylyltransferase; multifunctional enzyme: riboflavin kinase (EC 2.7.1. ...
88-304 1.59e-14

riboflavin kinase/FMN adenylyltransferase; multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase). [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD]


Pssm-ID: 272898 [Multi-domain]  Cd Length: 288  Bit Score: 72.86  E-value: 1.59e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664    88 ALGKFDALHIGHRELAIQAARIGTPYLLSFVGL------AEVLGWKPRAPIVAKCDRKRVLSSwasyCGNIAPV--EFEI 159
Cdd:TIGR00083   3 AIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLlfephpSEQFNWLTAPALTPLEDKARQLQI----KGVEQLLvvVFDE 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664   160 EFASvrhLNPQQFVEK-LSRELRVCGVVAGENYRFGYRASGDASELVRLCKDFGIsayiinSVMDKnqvsvNTEEEDSKs 238
Cdd:TIGR00083  79 EFAN---LSALQFIDQlIVKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIF------CVIVK-----QLFCQDIR- 143
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18420664   239 kergqVSSTRVRHALAAGDVRYVTELLGRPHRVISRTRTQDltsKRGR-ISLQTSSL-LN---LPPGNGVY 304
Cdd:TIGR00083 144 -----ISSSAIRQALKNGDLELANKLLGRPYFICGTVIHGQ---KLGRtLGFPTANIkLKnqvLPLKGGYY 206
 
Name Accession Description Interval E-value
FAD_synthetase_N cd02064
FAD synthetase, N-terminal domain of the bifunctional enzyme; FAD synthetase_N. N-terminal ...
86-274 2.48e-42

FAD synthetase, N-terminal domain of the bifunctional enzyme; FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.


Pssm-ID: 185679 [Multi-domain]  Cd Length: 180  Bit Score: 145.38  E-value: 2.48e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664  86 IVALGKFDALHIGHRELAIQAARI-----GTPYLLSFVGL-AEVL-GWKPRAPIVAKCDRKRVLSSWASYCGNIapVEFE 158
Cdd:cd02064   2 VVAIGNFDGVHLGHQALIKTLKKIarergLPSAVLTFDPHpREVFlPDKAPPRLTTLEEKLELLESLGVDYLLV--LPFD 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664 159 IEFASvrhLNPQQFVEKLSRELRVCGVVAGENYRFGYRASGDASELVRLCKDFGISAYIINSVMDKNQVsvnteeedsks 238
Cdd:cd02064  80 KEFAS---LSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGER----------- 145
                       170       180       190
                ....*....|....*....|....*....|....*.
gi 18420664 239 kergqVSSTRVRHALAAGDVRYVTELLGRPHRVISR 274
Cdd:cd02064 146 -----VSSTRIREALAEGDVELANELLGRPYSIEGR 176
RibF COG0196
FAD synthase [Coenzyme transport and metabolism]; FAD synthase is part of the Pathway ...
84-314 3.07e-37

FAD synthase [Coenzyme transport and metabolism]; FAD synthase is part of the Pathway/BioSystem: Riboflavin/FAD biosynthesis


Pssm-ID: 439966 [Multi-domain]  Cd Length: 310  Bit Score: 135.94  E-value: 3.07e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664  84 GGIVALGKFDALHIGHREL---AIQAARI--GTPYLLSFVGL-AEVL-GWKPRAPIVAKCDRKRVLSSwasyCG--NIAP 154
Cdd:COG0196  16 GTVVTIGNFDGVHLGHQALiarLVELARElgLPSVVLTFEPHpREVFrPDKAPKLLTTLEEKLELLEE----LGvdYVLV 91
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664 155 VEFEIEFASvrhLNPQQFVEK-LSRELRVCGVVAGENYRFGYRASGDASELVRLCKDFGISAYIINSVMDKNQVsvntee 233
Cdd:COG0196  92 LPFTREFAA---LSPEEFVEEiLVDKLGAKHVVVGDDFRFGKGRAGDVELLRELGEEYGFEVEVVPPVTIDGER------ 162
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664 234 edskskergqVSSTRVRHALAAGDVRYVTELLGRPHRVISRTRTQDltsKRGR--------ISLQTSSLLnlpPGNGVYk 305
Cdd:COG0196 163 ----------VSSTRIREALAEGDVEEAAELLGRPYSISGRVVHGD---KRGRtlgfptanLALPEEKLL---PADGVY- 225

                ....*....
gi 18420664 306 ACSLIVGDK 314
Cdd:COG0196 226 AVRVRIDGR 234
PRK05627 PRK05627
bifunctional riboflavin kinase/FAD synthetase;
77-314 5.26e-31

bifunctional riboflavin kinase/FAD synthetase;


Pssm-ID: 235536 [Multi-domain]  Cd Length: 305  Bit Score: 119.10  E-value: 5.26e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664   77 EGLSPVAGGIVALGKFDALHIGHREL---AIQAARIG---------TPYLLSFVGLAevlgwKPRAPIVAKCDRKRVLSS 144
Cdd:PRK05627   7 HNIPQPPDCVLTIGNFDGVHRGHQALlarAREIARERglpsvvmtfEPHPREVFAPD-----KAPARLTPLRDKAELLAE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664  145 wasyCG-NIAPVE-FEIEFAsvrHLNPQQFVEKLSRE-LRVCGVVAGENYRFGYRASGDASELVRLCKDFGISAYIINSV 221
Cdd:PRK05627  82 ----LGvDYVLVLpFDEEFA---KLSAEEFIEDLLVKgLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEV 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664  222 MDKNQVsvnteeedskskergqVSSTRVRHALAAGDVRYVTELLGRPHRVISR-TRTQdltsKRGR------ISLQTSSl 294
Cdd:PRK05627 155 KEDGER----------------VSSTAIRQALAEGDLELANKLLGRPYSISGRvVHGQ----KLGRtlgfptANLPLPD- 213
                        250       260
                 ....*....|....*....|
gi 18420664  295 lNLPPGNGVYkACSLIVGDK 314
Cdd:PRK05627 214 -RVLPADGVY-AVRVKVDGK 231
FAD_syn pfam06574
FAD synthetase; This family corresponds to the N terminal domain of the bifunctional enzyme ...
84-248 4.43e-18

FAD synthetase; This family corresponds to the N terminal domain of the bifunctional enzyme riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin 5'-phospho transferase and ATP:FMN-adenylyltransferase activity. They catalyze the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD. This domain is thought to have the flavin mononucleotide (FMN) adenylyltransferase activity.


Pssm-ID: 429011 [Multi-domain]  Cd Length: 158  Bit Score: 80.30  E-value: 4.43e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664    84 GGIVALGKFDALHIGHRELAIQAARIGTPYLLSFVGL------AEVLGwKPRAP--IVAKCDRKRVLSSW---ASYCgni 152
Cdd:pfam06574   7 GCVVTIGNFDGVHLGHQALIAKAKEIARELGLPSVVVtfephpREVFN-PDSAPfrLTTLEEKIELLAELgvdYLLV--- 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664   153 apVEFEIEFASvrhLNPQQFVEKLSRE-LRVCGVVAGENYRFGYRASGDASELVRLCKDFGISAYIINSVmdknqvsvnt 231
Cdd:pfam06574  83 --LPFTKEFAS---LSAEEFIENVLVDgLNVKHVVVGFDFRFGKGRKGDVELLKELGAKLGFEVTIVPPV---------- 147
                         170
                  ....*....|....*..
gi 18420664   232 EEEDSKskergqVSSTR 248
Cdd:pfam06574 148 ELDGEK------ISSTR 158
ribF TIGR00083
riboflavin kinase/FMN adenylyltransferase; multifunctional enzyme: riboflavin kinase (EC 2.7.1. ...
88-304 1.59e-14

riboflavin kinase/FMN adenylyltransferase; multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase). [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD]


Pssm-ID: 272898 [Multi-domain]  Cd Length: 288  Bit Score: 72.86  E-value: 1.59e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664    88 ALGKFDALHIGHRELAIQAARIGTPYLLSFVGL------AEVLGWKPRAPIVAKCDRKRVLSSwasyCGNIAPV--EFEI 159
Cdd:TIGR00083   3 AIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLlfephpSEQFNWLTAPALTPLEDKARQLQI----KGVEQLLvvVFDE 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664   160 EFASvrhLNPQQFVEK-LSRELRVCGVVAGENYRFGYRASGDASELVRLCKDFGIsayiinSVMDKnqvsvNTEEEDSKs 238
Cdd:TIGR00083  79 EFAN---LSALQFIDQlIVKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIF------CVIVK-----QLFCQDIR- 143
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18420664   239 kergqVSSTRVRHALAAGDVRYVTELLGRPHRVISRTRTQDltsKRGR-ISLQTSSL-LN---LPPGNGVY 304
Cdd:TIGR00083 144 -----ISSSAIRQALKNGDLELANKLLGRPYFICGTVIHGQ---KLGRtLGFPTANIkLKnqvLPLKGGYY 206
PRK07143 PRK07143
hypothetical protein; Provisional
89-330 4.87e-09

hypothetical protein; Provisional


Pssm-ID: 235946 [Multi-domain]  Cd Length: 279  Bit Score: 56.55  E-value: 4.87e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664   89 LGKFDALHIGHRELAIQAARIGTPYLLSFVglaevlgwkpRAPIVAKCDRKRVLSSWASYCGNIAPVEF----EIEF-AS 163
Cdd:PRK07143  21 LGGFESFHLGHLELFKKAKESNDEIVIVIF----------KNPENLPKNTNKKFSDLNSRLQTLANLGFkniiLLDFnEE 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664  164 VRHLNPQQFVEKLSrELRVCGVVAGENYRFGYRASGDASELvrlcKDFGISAYIINsvmdknqvsvntEEEDSKSKergq 243
Cdd:PRK07143  91 LQNLSGNDFIEKLT-KNQVSFFVVGKDFRFGKNASWNADDL----KEYFPNVHIVE------------ILKINQQK---- 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664  244 VSSTRVRHALAAGDVRYVTELLGRPHRVISrtrtqDLTSKrgrISLQTSSLLNlPPGNGVYkaCSLIVGDKHPISCKVIV 323
Cdd:PRK07143 150 ISTSLLKEFIEFGDIELLNSLLLYNYSISI-----TINKN---FEFTYPQNII-KLHAGIY--LAYVVINNFKYHGILKI 218

                 ....*..
gi 18420664  324 DTSNLYI 330
Cdd:PRK07143 219 NFNNKNK 225
cyt_tran_rel TIGR00125
cytidyltransferase-like domain; Protein families that contain at least one copy of this domain ...
86-142 1.39e-04

cytidyltransferase-like domain; Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.


Pssm-ID: 272920 [Multi-domain]  Cd Length: 66  Bit Score: 39.60  E-value: 1.39e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18420664    86 IVALGKFDALHIGHRELAIQAARIGtPYLLSFVGLAEVLGWKPRAPIVAKCDRKRVL 142
Cdd:TIGR00125   2 VIFVGTFDPFHLGHLDLLERAKELF-DELIVGVGSDQFVNPLKGEPVFSLEERLEML 57
cytidylyltransferase_like cd02039
Cytidylyltransferase-like domain; Cytidylyltransferase-like domain. Many of these proteins are ...
87-204 1.84e-04

Cytidylyltransferase-like domain; Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.


Pssm-ID: 185678 [Multi-domain]  Cd Length: 143  Bit Score: 41.27  E-value: 1.84e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420664  87 VALGKFDALHIGHRELAIQAARIGTPYLLSFVGLAEVLGWKPRAPIVAKcDRKRVLSSWASYCGNIAPVEFEiefaSVRH 166
Cdd:cd02039   3 IIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKKRNKDPFSLH-ERVEMLKEILKDRLKVVPVDFP----EVKI 77
                        90       100       110
                ....*....|....*....|....*....|....*...
gi 18420664 167 LNPQQFVEKLSRELRVCGVVAGENYRFGYRASGDASEL 204
Cdd:cd02039  78 LLAVVFILKILLKVGPDKVVVGEDFAFGKNASYNKDLK 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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