Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]
pentatricopeptide repeat-containing protein( domain architecture ID 1000279)
pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner
List of domain hits
Name | Accession | Description | Interval | E-value | |||
PPR_2 super family | cl38385 | PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
193-238 | 3.18e-06 | |||
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. The actual alignment was detected with superfamily member pfam13041: Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 43.89 E-value: 3.18e-06
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LapB | COG2956 | Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
139-286 | 1.98e-04 | |||
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis]; : Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.79 E-value: 1.98e-04
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Name | Accession | Description | Interval | E-value | ||||
PPR_2 | pfam13041 | PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
193-238 | 3.18e-06 | ||||
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 43.89 E-value: 3.18e-06
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LapB | COG2956 | Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
139-286 | 1.98e-04 | ||||
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.79 E-value: 1.98e-04
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PLN03218 | PLN03218 | maturation of RBCL 1; Provisional |
116-256 | 9.75e-04 | ||||
maturation of RBCL 1; Provisional Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 41.40 E-value: 9.75e-04
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Name | Accession | Description | Interval | E-value | ||||
PPR_2 | pfam13041 | PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
193-238 | 3.18e-06 | ||||
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 43.89 E-value: 3.18e-06
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PPR_3 | pfam13812 | Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
180-237 | 1.32e-04 | ||||
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana. Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 39.65 E-value: 1.32e-04
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LapB | COG2956 | Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
139-286 | 1.98e-04 | ||||
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.79 E-value: 1.98e-04
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LapB | COG2956 | Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
140-210 | 2.59e-04 | ||||
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.41 E-value: 2.59e-04
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NrfG | COG4235 | Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
140-186 | 2.99e-04 | ||||
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.37 E-value: 2.99e-04
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PLN03218 | PLN03218 | maturation of RBCL 1; Provisional |
116-256 | 9.75e-04 | ||||
maturation of RBCL 1; Provisional Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 41.40 E-value: 9.75e-04
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PLN03077 | PLN03077 | Protein ECB2; Provisional |
159-282 | 2.21e-03 | ||||
Protein ECB2; Provisional Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 40.22 E-value: 2.21e-03
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PilF | COG3063 | Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
140-186 | 9.67e-03 | ||||
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 35.15 E-value: 9.67e-03
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PilF | COG3063 | Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
140-210 | 9.96e-03 | ||||
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 35.15 E-value: 9.96e-03
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Blast search parameters | ||||
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