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Conserved domains on  [gi|18417012|ref|NP_567776|]
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prenylated RAB acceptor 1.H [Arabidopsis thaliana]

Protein Classification

PRA1 family protein( domain architecture ID 10505078)

prenylated Rab acceptor protein 1 (PRA1) family protein facilitates the delivery of Rab GTPases to the membrane by dissociating the Rab-GDI complex during vesicle trafficking

Gene Ontology:  GO:0016020|GO:0015031
PubMed:  16473601

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRA1 pfam03208
PRA1 family protein; This family includes the PRA1 (Prenylated rab acceptor) protein which is ...
 113-230 3.68e-12

PRA1 family protein; This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab guanine dissociation inhibitor (GDI) displacement factor. This family also includes the glutamate transporter EAAC1 interacting protein GTRAP3-18.


:

Pssm-ID: 460846  Cd Length: 141  Bit Score: 61.77  E-value: 3.68e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18417012   113 DSYSFPSSSQQARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALW-ELFKYCSDKWK-FDRHPSMRKLS 190
Cdd:pfam03208  16 SRFSRPRSFSEATSRVKRNLLYFRTNYFIVVLLLLFLSLLTHPLSLIVFLVVLAAWlFLYFLRDEPLViFGRTFSDRVVL 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 18417012   191 IGIGqCATAVLLTFLNVQMALFSALAISYSVMILHAGFRK 230
Cdd:pfam03208  96 IGLL-VVSVVLLFLTGVGSVLLWALGAGLLLVLLHASFRL 134
 
Name Accession Description Interval E-value
PRA1 pfam03208
PRA1 family protein; This family includes the PRA1 (Prenylated rab acceptor) protein which is ...
 113-230 3.68e-12

PRA1 family protein; This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab guanine dissociation inhibitor (GDI) displacement factor. This family also includes the glutamate transporter EAAC1 interacting protein GTRAP3-18.


Pssm-ID: 460846  Cd Length: 141  Bit Score: 61.77  E-value: 3.68e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18417012   113 DSYSFPSSSQQARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALW-ELFKYCSDKWK-FDRHPSMRKLS 190
Cdd:pfam03208  16 SRFSRPRSFSEATSRVKRNLLYFRTNYFIVVLLLLFLSLLTHPLSLIVFLVVLAAWlFLYFLRDEPLViFGRTFSDRVVL 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 18417012   191 IGIGqCATAVLLTFLNVQMALFSALAISYSVMILHAGFRK 230
Cdd:pfam03208  96 IGLL-VVSVVLLFLTGVGSVLLWALGAGLLLVLLHASFRL 134
 
Name Accession Description Interval E-value
PRA1 pfam03208
PRA1 family protein; This family includes the PRA1 (Prenylated rab acceptor) protein which is ...
 113-230 3.68e-12

PRA1 family protein; This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab guanine dissociation inhibitor (GDI) displacement factor. This family also includes the glutamate transporter EAAC1 interacting protein GTRAP3-18.


Pssm-ID: 460846  Cd Length: 141  Bit Score: 61.77  E-value: 3.68e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18417012   113 DSYSFPSSSQQARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALW-ELFKYCSDKWK-FDRHPSMRKLS 190
Cdd:pfam03208  16 SRFSRPRSFSEATSRVKRNLLYFRTNYFIVVLLLLFLSLLTHPLSLIVFLVVLAAWlFLYFLRDEPLViFGRTFSDRVVL 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 18417012   191 IGIGqCATAVLLTFLNVQMALFSALAISYSVMILHAGFRK 230
Cdd:pfam03208  96 IGLL-VVSVVLLFLTGVGSVLLWALGAGLLLVLLHASFRL 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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