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Conserved domains on  [gi|18415984|ref|NP_567664|]
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myb domain protein 85 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 1-131 5.51e-69

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 219.85  E-value: 5.51e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18415984    1 MGRQPCCDKLGVKKGPWTVEEDKKLINFILTNGHCCWRALPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLSHDEEQLVID 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 18415984   81 LHANLGNKWSKIASRLPGRTDNEIKNHWNTHIKKKLLKMGIDPMTHQPLNQ 131
Cdd:PLN03091  81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSE 131
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-131 5.51e-69

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 219.85  E-value: 5.51e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18415984    1 MGRQPCCDKLGVKKGPWTVEEDKKLINFILTNGHCCWRALPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLSHDEEQLVID 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 18415984   81 LHANLGNKWSKIASRLPGRTDNEIKNHWNTHIKKKLLKMGIDPMTHQPLNQ 131
Cdd:PLN03091  81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSE 131
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 67-112 2.15e-14

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 65.60  E-value: 2.15e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 18415984    67 RGLLSHDEEQLVIDLHANLGNKWSKIASRLPGRTDNEIKNHWNTHI 112
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 12-109 1.36e-11

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 64.04  E-value: 1.36e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18415984  12 VKKGPWTVEED---KKLINFILTNGhccWRALPKLAGlRRCGKSCRLRWTNYLRPDLKRGLLSHDEEQLVIDLHANLGNK 88
Cdd:COG5147  18 RKGGSWKRTEDedlKALVKKLGPNN---WSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ 93

                        90       100
                ....*....|....*....|.
gi 18415984  89 WSKIASRLPGRTDNEIKNHWN 109
Cdd:COG5147  94 WSTIADYKDRRTAQQCVERYV 114
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-112 7.35e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 53.35  E-value: 7.35e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 18415984  71 SHDEEQLVIDLHANLG-NKWSKIASRLPGRTDNEIKNHWNTHI 112
Cdd:cd00167   3 TEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
71-114 1.05e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 53.00  E-value: 1.05e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 18415984     71 SHDEEQLVIDLHANLG-NKWSKIASRLPGRTDNEIKNHWNTHIKK 114
Cdd:smart00717   5 TEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-131 5.51e-69

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 219.85  E-value: 5.51e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18415984    1 MGRQPCCDKLGVKKGPWTVEEDKKLINFILTNGHCCWRALPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLSHDEEQLVID 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 18415984   81 LHANLGNKWSKIASRLPGRTDNEIKNHWNTHIKKKLLKMGIDPMTHQPLNQ 131
Cdd:PLN03091  81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSE 131
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 5-157 6.53e-62

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 195.30  E-value: 6.53e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18415984    5 PCCDKLGVKKGPWTVEEDKKLINFILTNGHCCWRALPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLSHDEEQLVIDLHAN 84
Cdd:PLN03212  16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRL 95

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18415984   85 LGNKWSKIASRLPGRTDNEIKNHWNTHIKKKLLKMGIDPMTHQPLnqEPSNIDNSKTIPSNPDDVSVEPKTTN 157
Cdd:PLN03212  96 LGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPL--DANNIHKPEEEVSGGQKYPIEPISSS 166
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 67-112 2.15e-14

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 65.60  E-value: 2.15e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 18415984    67 RGLLSHDEEQLVIDLHANLGNKWSKIASRLPGRTDNEIKNHWNTHI 112
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 12-109 1.36e-11

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 64.04  E-value: 1.36e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18415984  12 VKKGPWTVEED---KKLINFILTNGhccWRALPKLAGlRRCGKSCRLRWTNYLRPDLKRGLLSHDEEQLVIDLHANLGNK 88
Cdd:COG5147  18 RKGGSWKRTEDedlKALVKKLGPNN---WSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ 93

                        90       100
                ....*....|....*....|.
gi 18415984  89 WSKIASRLPGRTDNEIKNHWN 109
Cdd:COG5147  94 WSTIADYKDRRTAQQCVERYV 114
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 14-61 1.74e-10

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 54.82  E-value: 1.74e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 18415984    14 KGPWTVEEDKKLINFILTNGHcCWRALPKLAGlRRCGKSCRLRWTNYL 61
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGN-RWKKIAKLLP-GRTDNQCKNRWQNYL 46
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-112 7.35e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 53.35  E-value: 7.35e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 18415984  71 SHDEEQLVIDLHANLG-NKWSKIASRLPGRTDNEIKNHWNTHI 112
Cdd:cd00167   3 TEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
71-114 1.05e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 53.00  E-value: 1.05e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 18415984     71 SHDEEQLVIDLHANLG-NKWSKIASRLPGRTDNEIKNHWNTHIKK 114
Cdd:smart00717   5 TEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-63 9.83e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 50.30  E-value: 9.83e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 18415984     14 KGPWTVEEDKKLINFILTNGHCCWRALPKLAGlRRCGKSCRLRWTNYLRP 63
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 16-61 4.38e-08

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 48.34  E-value: 4.38e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 18415984  16 PWTVEEDKKLINFILTNGHCCWRALPKLAGlRRCGKSCRLRWTNYL 61
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 71-116 2.84e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 43.84  E-value: 2.84e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 18415984    71 SHDEEQLVIDLHANLGNKWSKIASRLPGRTDNEIKNHWNTHIKKKL 116
Cdd:pfam13921   2 TEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKI 47
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 17-78 1.88e-05

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 41.53  E-value: 1.88e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18415984    17 WTVEEDKKLINFILTNGHCcWRALPKLAGlRRCGKSCRLRWTNYLRPDLKRGLLSHDEEQLV 78
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGND-WKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 64-118 6.37e-03

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 37.84  E-value: 6.37e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 18415984  64 DLKRGLLSHDEEQLVIDLHANLG-NKWSKIASRLPGRTDNEIKNHWNTHIKKKLLK 118
Cdd:COG5147  17 KRKGGSWKRTEDEDLKALVKKLGpNNWSKVASLLISSTGKQSSNRWNNHLNPQLKK 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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