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Conserved domains on  [gi|18414108|ref|NP_567413|]
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ralf-like 31 [Arabidopsis thaliana]

Protein Classification

rapid alkalinization factor family protein( domain architecture ID 10527526)

rapid alkalinization factor (RALF) family protein; the RALF family comprises a group of cysteine-rich peptides found throughout the plant kingdom which play multiple roles as hormonal signals in diverse processes, including root elongation, cell growth, pollen tube development, and fertilization

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RALF pfam05498
Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has ...
 44-106 8.08e-27

Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has been shown to reduce plant growth upon overexpression while mature plants were dwarfed and bushy. It has also been suggested that RALF23 of Arabidopsis, counteracts brassinosteroid (BR) growth-promoting effects which may be relieved by the down-regulation of RALF23


:

Pssm-ID: 428496  Cd Length: 65  Bit Score: 93.91  E-value: 8.08e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18414108    44 DEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQ-KPGASYYDCR-SGQANSYSRGCDTITRCAR 106
Cdd:pfam05498   1 EEVIMESEISRRVLASQRKYISYGALKRNQVPCNgRRGASYYNCNpPGPANPYSRGCSKITRCRR 65
 
Name Accession Description Interval E-value
RALF pfam05498
Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has ...
 44-106 8.08e-27

Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has been shown to reduce plant growth upon overexpression while mature plants were dwarfed and bushy. It has also been suggested that RALF23 of Arabidopsis, counteracts brassinosteroid (BR) growth-promoting effects which may be relieved by the down-regulation of RALF23


Pssm-ID: 428496  Cd Length: 65  Bit Score: 93.91  E-value: 8.08e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18414108    44 DEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQ-KPGASYYDCR-SGQANSYSRGCDTITRCAR 106
Cdd:pfam05498   1 EEVIMESEISRRVLASQRKYISYGALKRNQVPCNgRRGASYYNCNpPGPANPYSRGCSKITRCRR 65
PLN03221 PLN03221
rapid alkalinization factor 23; Provisional
 3-106 8.54e-20

rapid alkalinization factor 23; Provisional


Pssm-ID: 178760  Cd Length: 137  Bit Score: 78.17  E-value: 8.54e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18414108    3 NSTALVIFAILFLL---------------ISADAFPIPSPNGEIDAMLIRNSIIGEDEDL------------MPTEISRR 55
Cdd:PLN03221   7 NSGAAAIFAILLILavhfwsvavssqsieFAGDFPPFETECRGTIAECSVSAALGDDGDLfygggemgaefeMDSEINRR 86

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 18414108   56 VLmAQKRYIGYETLRRDMVPCQKPGASYYDCRSG-QANSYSRGCDTITRCAR 106
Cdd:PLN03221  87 IL-ATRRYISYGALRRNTIPCSRRGASYYNCRRGaQANPYSRGCSAITRCRR 137
 
Name Accession Description Interval E-value
RALF pfam05498
Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has ...
 44-106 8.08e-27

Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has been shown to reduce plant growth upon overexpression while mature plants were dwarfed and bushy. It has also been suggested that RALF23 of Arabidopsis, counteracts brassinosteroid (BR) growth-promoting effects which may be relieved by the down-regulation of RALF23


Pssm-ID: 428496  Cd Length: 65  Bit Score: 93.91  E-value: 8.08e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18414108    44 DEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQ-KPGASYYDCR-SGQANSYSRGCDTITRCAR 106
Cdd:pfam05498   1 EEVIMESEISRRVLASQRKYISYGALKRNQVPCNgRRGASYYNCNpPGPANPYSRGCSKITRCRR 65
PLN03221 PLN03221
rapid alkalinization factor 23; Provisional
 3-106 8.54e-20

rapid alkalinization factor 23; Provisional


Pssm-ID: 178760  Cd Length: 137  Bit Score: 78.17  E-value: 8.54e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18414108    3 NSTALVIFAILFLL---------------ISADAFPIPSPNGEIDAMLIRNSIIGEDEDL------------MPTEISRR 55
Cdd:PLN03221   7 NSGAAAIFAILLILavhfwsvavssqsieFAGDFPPFETECRGTIAECSVSAALGDDGDLfygggemgaefeMDSEINRR 86

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 18414108   56 VLmAQKRYIGYETLRRDMVPCQKPGASYYDCRSG-QANSYSRGCDTITRCAR 106
Cdd:PLN03221  87 IL-ATRRYISYGALRRNTIPCSRRGASYYNCRRGaQANPYSRGCSAITRCRR 137
PLN03222 PLN03222
rapid alkalinization factor 23-like protein; Provisional
 18-106 2.46e-18

rapid alkalinization factor 23-like protein; Provisional


Pssm-ID: 178761  Cd Length: 119  Bit Score: 74.00  E-value: 2.46e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18414108   18 SADAFPIPSP-NGEIDAMLIRNSiigEDEDLMPTEISRRVLmAQKRYIGYETLRRDMVPCQKPGASYYDCRSG-QANSYS 95
Cdd:PLN03222  33 SGDFMPIDSKcNGTIAECSLSTA---EEEFEMDSEINRRIL-ATTKYISYGALRRNTVPCSRRGASYYNCRRGaQANPYS 108

                         90
                 ....*....|.
gi 18414108   96 RGCDTITRCAR 106
Cdd:PLN03222 109 RGCSAITRCRR 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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