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Conserved domains on  [gi|18413170|ref|NP_567341|]
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cryptochrome 1 [Arabidopsis thaliana]

Protein Classification

crypt_chrom_pln and Cryptochrome_C domain-containing protein( domain architecture ID 11494968)

crypt_chrom_pln and Cryptochrome_C domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
crypt_chrom_pln TIGR02766
cryptochrome, plant family; At least five major families of cryptochomes and photolyases share ...
15-489 0e+00

cryptochrome, plant family; At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.


:

Pssm-ID: 131813 [Multi-domain]  Cd Length: 475  Bit Score: 913.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170    15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVASLL 94
Cdd:TIGR02766   1 IVWFRRDLRVEDNPALAAAARAGPVIPVFVWAPEEEGQYYPGRVSRWWLKQSLAHLDQSLRSLGTCLVTIRSTDTVAALL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170    95 DVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPES 174
Cdd:TIGR02766  81 DCVRSTGATRLFFNHLYDPVSLVRDHRAKEVLTAQGISVQSFNADLLYEPWEVYDELGRPFTMFAAFWERCLSMPYDPES 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   175 PLLPPKKIISGDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHL 254
Cdd:TIGR02766 161 PLLPPKKIISGDVSKCSADDLGFEDDSEKGSNALLARAWSPGWSNADKALTEFINGPLLEYSKNRKKADSATTSLLSPYL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   255 HFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAW 334
Cdd:TIGR02766 241 HFGEVSVRKVFHLVRMKQIAWANEGNSAGEESVNLFLRSIGLREYSRYISFNHPFSHEKPLLGHLKFFPWAVDENYFKAW 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   335 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFD 414
Cdd:TIGR02766 321 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELD 400
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18413170   415 RIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALS 489
Cdd:TIGR02766 401 RIDNPQLEGYKFDPNGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPLPIVGLDEARARLHEALS 475
Cryptochrome_C pfam12546
Blue/Ultraviolet sensing protein C terminal; This domain family is found in eukaryotes, and is ...
519-622 1.30e-38

Blue/Ultraviolet sensing protein C terminal; This domain family is found in eukaryotes, and is typically between 113 and 125 amino acids in length. The family is found in association with pfam03441, pfam00875. Cryptochromes are blue/ultraviolet-A light sensing photoreceptors involved in regulating various growth and developmental responses in plants.


:

Pssm-ID: 403665  Cd Length: 121  Bit Score: 138.77  E-value: 1.30e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   519 APIEFPRDITMEET-EPTRLNP----NRRYEDQMVPSITSSLIRPEEdEESSLNLRNSVGDSRAEVPRNmVNTNQAQQRR 593
Cdd:pfam12546   1 PPIAFPQELQMEVDrEPVRNNPphtpTRRYEDQMVPSMTSSLVRVEE-EELSSDLGNSSEDSRAEVPSN-VNFQPRQEPR 78
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 18413170   594 AE----PASNQVTAM---IPEFNIRIVAESTEDSTA 622
Cdd:pfam12546  79 EEtvngGTGNAVRTNqqnNPQNNIHRVRNAAEPSTA 114
 
Name Accession Description Interval E-value
crypt_chrom_pln TIGR02766
cryptochrome, plant family; At least five major families of cryptochomes and photolyases share ...
15-489 0e+00

cryptochrome, plant family; At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.


Pssm-ID: 131813 [Multi-domain]  Cd Length: 475  Bit Score: 913.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170    15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVASLL 94
Cdd:TIGR02766   1 IVWFRRDLRVEDNPALAAAARAGPVIPVFVWAPEEEGQYYPGRVSRWWLKQSLAHLDQSLRSLGTCLVTIRSTDTVAALL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170    95 DVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPES 174
Cdd:TIGR02766  81 DCVRSTGATRLFFNHLYDPVSLVRDHRAKEVLTAQGISVQSFNADLLYEPWEVYDELGRPFTMFAAFWERCLSMPYDPES 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   175 PLLPPKKIISGDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHL 254
Cdd:TIGR02766 161 PLLPPKKIISGDVSKCSADDLGFEDDSEKGSNALLARAWSPGWSNADKALTEFINGPLLEYSKNRKKADSATTSLLSPYL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   255 HFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAW 334
Cdd:TIGR02766 241 HFGEVSVRKVFHLVRMKQIAWANEGNSAGEESVNLFLRSIGLREYSRYISFNHPFSHEKPLLGHLKFFPWAVDENYFKAW 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   335 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFD 414
Cdd:TIGR02766 321 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELD 400
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18413170   415 RIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALS 489
Cdd:TIGR02766 401 RIDNPQLEGYKFDPNGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPLPIVGLDEARARLHEALS 475
PhrB COG0415
Deoxyribodipyrimidine photolyase [Replication, recombination and repair];
15-483 1.23e-151

Deoxyribodipyrimidine photolyase [Replication, recombination and repair];


Pssm-ID: 440184 [Multi-domain]  Cd Length: 466  Bit Score: 447.26  E-value: 1.23e-151
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170  15 IVWFRRDLRVEDNPALAAAVRAG-PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITkRSTDSVASL 93
Cdd:COG0415   5 LVWFRRDLRLHDNPALAAAAESGdPVIPVFILDPEQLGPHPLGAARRWFLHESLAALDASLRELGSRLIV-RRGDPEEVL 83
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170  94 LDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPydPE 173
Cdd:COG0415  84 PALARELGADAVYWNRDYEPYERARDAAVKAALREAGIEVHSFNDHLLFEPGEVLTGSGTPYKVFTPFWKAWLKRL--KR 161
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170 174 SPLLPPKKIiSGDVSKCVADPLvfeDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPH 253
Cdd:COG0415 162 APLPAPSAL-PALPIPPESDTL---ADLGLLPTDGLALLWPPGEAAALERLEDFLDDRLADYDETRDFPALDGTSRLSPH 237
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170 254 LHFGEVSVRKVFHLVRikqvawaNEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKA 333
Cdd:COG0415 238 LAFGEISPRQVWHAAL-------AALEEEGGEGAETFLSELAWREFYYHLLYHFPDLATENFRPEFDAIPWRNDEELFEA 310
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170 334 WRQGRTGYPLVDAGMRELWATGWLHDRIRvvvssffvkvLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREF 413
Cdd:COG0415 311 WQEGRTGYPIVDAGMRQLNQTGWMHNRVRmivasfltkdLLIDWRWGERWFMDTLVDGDLASNNGGWQWAAGTGTDAAPY 390
                       410       420       430       440       450       460       470
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170 414 DRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAagiELGSNYPLPIVGLDEAKAR 483
Cdd:COG0415 391 FRIFNPVTQGEKFDPDGDYIRRWVPELADLPAKYIHEPWKAPPLELKA---RLGKDYPAPIVDHKEARER 457
FAD_binding_7 pfam03441
FAD binding domain of DNA photolyase;
290-493 3.92e-84

FAD binding domain of DNA photolyase;


Pssm-ID: 460917 [Multi-domain]  Cd Length: 201  Bit Score: 263.55  E-value: 3.92e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   290 FLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 369
Cdd:pfam03441   1 FLSELAWREFYYQLLEHFPELEDRNLRPAFDRIPWREDEELFEAWKEGRTGYPIVDAAMRQLRQTGWMHNRVRMIVASFL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   370 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 449
Cdd:pfam03441  81 TKDLLIDWREGARWFAETLVDADPASNNGGWQWVAGTGTDAAPYFRIFNPVTQGEKFDPDGEYIRRWVPELADLPAKYIH 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 18413170   450 HPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARlheALSQMWQ 493
Cdd:pfam03441 161 EPWKAPAPVQRLAGCVLGKDYPAPIVDHKEARKR---ALARYKA 201
PRK10674 PRK10674
deoxyribodipyrimidine photolyase; Provisional
15-501 3.34e-68

deoxyribodipyrimidine photolyase; Provisional


Pssm-ID: 236734 [Multi-domain]  Cd Length: 472  Bit Score: 230.68  E-value: 3.34e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   15 IVWFRRDLRVEDNPALAAAVR--AGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTD---S 89
Cdd:PRK10674   5 LVWFRNDLRLHDNLALAAACRdpSARVLALFIATPAQWAAHDMAPRQAAFINAQLNALQIALAEKGIPLLFHEVDDfaaS 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   90 VASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTaqGIAVRSFNADLLYEPWEV---TDELGRPFSMF-AAFWER- 164
Cdd:PRK10674  85 VEWLKQFCQQHQVTHLFYNYQYEVNERQRDAAVERALR--NVVCQGFDDSVLLPPGSVmtgNHEMYKVFTPFkNAFLKRl 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170  165 ------CLSMPYDPESPLLPPKKIISGDVSKCVADPLVFEddseKGSNALLARawspgwsngdkaLTTFINGPLLEYSKN 238
Cdd:PRK10674 163 regdpeCVPAPKVRSSGAIEPLPPIPFNYPQQSFDTALFP----VGEKAAIAQ------------LRQFCQQGAGEYEQQ 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170  239 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWAnEGNEAGeesvnLFLKSIGLREYSRYISFNHP-YSHERPLLG 317
Cdd:PRK10674 227 RDFPAVDGTSRLSAYLATGVLSPRQCLHRLLAEQPQAL-DGGAGS-----VWLNELIWREFYRHLMVAYPsLCKHRPFIA 300
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170  318 HLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDA 397
Cdd:PRK10674 301 WTDRVQWQSNPAHLQAWQQGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANN 380
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170  398 LGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESvlqaAGIELgsNYPLPIVgl 477
Cdd:PRK10674 381 GGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFIRRWLPELRDVPGKAIHQPWRWAEK----AGVTL--DYPQPIV-- 452
                        490       500
                 ....*....|....*....|....
gi 18413170  478 DEAKARLhEALSqmwQLEAASRAA 501
Cdd:PRK10674 453 DHKQARL-ATLA---AYEAARKGA 472
Cryptochrome_C pfam12546
Blue/Ultraviolet sensing protein C terminal; This domain family is found in eukaryotes, and is ...
519-622 1.30e-38

Blue/Ultraviolet sensing protein C terminal; This domain family is found in eukaryotes, and is typically between 113 and 125 amino acids in length. The family is found in association with pfam03441, pfam00875. Cryptochromes are blue/ultraviolet-A light sensing photoreceptors involved in regulating various growth and developmental responses in plants.


Pssm-ID: 403665  Cd Length: 121  Bit Score: 138.77  E-value: 1.30e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   519 APIEFPRDITMEET-EPTRLNP----NRRYEDQMVPSITSSLIRPEEdEESSLNLRNSVGDSRAEVPRNmVNTNQAQQRR 593
Cdd:pfam12546   1 PPIAFPQELQMEVDrEPVRNNPphtpTRRYEDQMVPSMTSSLVRVEE-EELSSDLGNSSEDSRAEVPSN-VNFQPRQEPR 78
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 18413170   594 AE----PASNQVTAM---IPEFNIRIVAESTEDSTA 622
Cdd:pfam12546  79 EEtvngGTGNAVRTNqqnNPQNNIHRVRNAAEPSTA 114
 
Name Accession Description Interval E-value
crypt_chrom_pln TIGR02766
cryptochrome, plant family; At least five major families of cryptochomes and photolyases share ...
15-489 0e+00

cryptochrome, plant family; At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.


Pssm-ID: 131813 [Multi-domain]  Cd Length: 475  Bit Score: 913.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170    15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVASLL 94
Cdd:TIGR02766   1 IVWFRRDLRVEDNPALAAAARAGPVIPVFVWAPEEEGQYYPGRVSRWWLKQSLAHLDQSLRSLGTCLVTIRSTDTVAALL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170    95 DVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPES 174
Cdd:TIGR02766  81 DCVRSTGATRLFFNHLYDPVSLVRDHRAKEVLTAQGISVQSFNADLLYEPWEVYDELGRPFTMFAAFWERCLSMPYDPES 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   175 PLLPPKKIISGDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHL 254
Cdd:TIGR02766 161 PLLPPKKIISGDVSKCSADDLGFEDDSEKGSNALLARAWSPGWSNADKALTEFINGPLLEYSKNRKKADSATTSLLSPYL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   255 HFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAW 334
Cdd:TIGR02766 241 HFGEVSVRKVFHLVRMKQIAWANEGNSAGEESVNLFLRSIGLREYSRYISFNHPFSHEKPLLGHLKFFPWAVDENYFKAW 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   335 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFD 414
Cdd:TIGR02766 321 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELD 400
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18413170   415 RIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALS 489
Cdd:TIGR02766 401 RIDNPQLEGYKFDPNGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPLPIVGLDEARARLHEALS 475
PhrB COG0415
Deoxyribodipyrimidine photolyase [Replication, recombination and repair];
15-483 1.23e-151

Deoxyribodipyrimidine photolyase [Replication, recombination and repair];


Pssm-ID: 440184 [Multi-domain]  Cd Length: 466  Bit Score: 447.26  E-value: 1.23e-151
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170  15 IVWFRRDLRVEDNPALAAAVRAG-PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITkRSTDSVASL 93
Cdd:COG0415   5 LVWFRRDLRLHDNPALAAAAESGdPVIPVFILDPEQLGPHPLGAARRWFLHESLAALDASLRELGSRLIV-RRGDPEEVL 83
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170  94 LDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPydPE 173
Cdd:COG0415  84 PALARELGADAVYWNRDYEPYERARDAAVKAALREAGIEVHSFNDHLLFEPGEVLTGSGTPYKVFTPFWKAWLKRL--KR 161
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170 174 SPLLPPKKIiSGDVSKCVADPLvfeDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPH 253
Cdd:COG0415 162 APLPAPSAL-PALPIPPESDTL---ADLGLLPTDGLALLWPPGEAAALERLEDFLDDRLADYDETRDFPALDGTSRLSPH 237
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170 254 LHFGEVSVRKVFHLVRikqvawaNEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKA 333
Cdd:COG0415 238 LAFGEISPRQVWHAAL-------AALEEEGGEGAETFLSELAWREFYYHLLYHFPDLATENFRPEFDAIPWRNDEELFEA 310
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170 334 WRQGRTGYPLVDAGMRELWATGWLHDRIRvvvssffvkvLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREF 413
Cdd:COG0415 311 WQEGRTGYPIVDAGMRQLNQTGWMHNRVRmivasfltkdLLIDWRWGERWFMDTLVDGDLASNNGGWQWAAGTGTDAAPY 390
                       410       420       430       440       450       460       470
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170 414 DRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAagiELGSNYPLPIVGLDEAKAR 483
Cdd:COG0415 391 FRIFNPVTQGEKFDPDGDYIRRWVPELADLPAKYIHEPWKAPPLELKA---RLGKDYPAPIVDHKEARER 457
FAD_binding_7 pfam03441
FAD binding domain of DNA photolyase;
290-493 3.92e-84

FAD binding domain of DNA photolyase;


Pssm-ID: 460917 [Multi-domain]  Cd Length: 201  Bit Score: 263.55  E-value: 3.92e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   290 FLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 369
Cdd:pfam03441   1 FLSELAWREFYYQLLEHFPELEDRNLRPAFDRIPWREDEELFEAWKEGRTGYPIVDAAMRQLRQTGWMHNRVRMIVASFL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   370 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 449
Cdd:pfam03441  81 TKDLLIDWREGARWFAETLVDADPASNNGGWQWVAGTGTDAAPYFRIFNPVTQGEKFDPDGEYIRRWVPELADLPAKYIH 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 18413170   450 HPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARlheALSQMWQ 493
Cdd:pfam03441 161 EPWKAPAPVQRLAGCVLGKDYPAPIVDHKEARKR---ALARYKA 201
PRK10674 PRK10674
deoxyribodipyrimidine photolyase; Provisional
15-501 3.34e-68

deoxyribodipyrimidine photolyase; Provisional


Pssm-ID: 236734 [Multi-domain]  Cd Length: 472  Bit Score: 230.68  E-value: 3.34e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   15 IVWFRRDLRVEDNPALAAAVR--AGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTD---S 89
Cdd:PRK10674   5 LVWFRNDLRLHDNLALAAACRdpSARVLALFIATPAQWAAHDMAPRQAAFINAQLNALQIALAEKGIPLLFHEVDDfaaS 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   90 VASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTaqGIAVRSFNADLLYEPWEV---TDELGRPFSMF-AAFWER- 164
Cdd:PRK10674  85 VEWLKQFCQQHQVTHLFYNYQYEVNERQRDAAVERALR--NVVCQGFDDSVLLPPGSVmtgNHEMYKVFTPFkNAFLKRl 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170  165 ------CLSMPYDPESPLLPPKKIISGDVSKCVADPLVFEddseKGSNALLARawspgwsngdkaLTTFINGPLLEYSKN 238
Cdd:PRK10674 163 regdpeCVPAPKVRSSGAIEPLPPIPFNYPQQSFDTALFP----VGEKAAIAQ------------LRQFCQQGAGEYEQQ 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170  239 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWAnEGNEAGeesvnLFLKSIGLREYSRYISFNHP-YSHERPLLG 317
Cdd:PRK10674 227 RDFPAVDGTSRLSAYLATGVLSPRQCLHRLLAEQPQAL-DGGAGS-----VWLNELIWREFYRHLMVAYPsLCKHRPFIA 300
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170  318 HLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDA 397
Cdd:PRK10674 301 WTDRVQWQSNPAHLQAWQQGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANN 380
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170  398 LGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESvlqaAGIELgsNYPLPIVgl 477
Cdd:PRK10674 381 GGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFIRRWLPELRDVPGKAIHQPWRWAEK----AGVTL--DYPQPIV-- 452
                        490       500
                 ....*....|....*....|....
gi 18413170  478 DEAKARLhEALSqmwQLEAASRAA 501
Cdd:PRK10674 453 DHKQARL-ATLA---AYEAARKGA 472
DNA_photolyase pfam00875
DNA photolyase; This domain binds a light harvesting cofactor.
15-172 3.60e-39

DNA photolyase; This domain binds a light harvesting cofactor.


Pssm-ID: 459974 [Multi-domain]  Cd Length: 161  Bit Score: 141.96  E-value: 3.60e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170    15 IVWFRRDLRVEDNPALAAAVRAG-PVIALFVWAPEEEGhyhPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRStDSVASL 93
Cdd:pfam00875   2 LVWFRRDLRLHDNPALAAAAASGaPLIPVFILDPAFHD---LGAARRWFLLESLADLDEELRERGIRLVVRRG-DPADVL 77
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 18413170    94 LDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDP 172
Cdd:pfam00875  78 PELAKELGASAVFANRDYEPYERRRDAAVAEALREAGVEVHSFDGHTLVPPGEVRTKKGKPYRVFTPFWKAWLAELLEP 156
Cryptochrome_C pfam12546
Blue/Ultraviolet sensing protein C terminal; This domain family is found in eukaryotes, and is ...
519-622 1.30e-38

Blue/Ultraviolet sensing protein C terminal; This domain family is found in eukaryotes, and is typically between 113 and 125 amino acids in length. The family is found in association with pfam03441, pfam00875. Cryptochromes are blue/ultraviolet-A light sensing photoreceptors involved in regulating various growth and developmental responses in plants.


Pssm-ID: 403665  Cd Length: 121  Bit Score: 138.77  E-value: 1.30e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18413170   519 APIEFPRDITMEET-EPTRLNP----NRRYEDQMVPSITSSLIRPEEdEESSLNLRNSVGDSRAEVPRNmVNTNQAQQRR 593
Cdd:pfam12546   1 PPIAFPQELQMEVDrEPVRNNPphtpTRRYEDQMVPSMTSSLVRVEE-EELSSDLGNSSEDSRAEVPSN-VNFQPRQEPR 78
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 18413170   594 AE----PASNQVTAM---IPEFNIRIVAESTEDSTA 622
Cdd:pfam12546  79 EEtvngGTGNAVRTNqqnNPQNNIHRVRNAAEPSTA 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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