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Conserved domains on  [gi|18411785|ref|NP_567219|]
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NFU domain protein 1 [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NifU pfam01106
NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common ...
90-150 8.13e-24

NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.


:

Pssm-ID: 460066 [Multi-domain]  Cd Length: 67  Bit Score: 90.19  E-value: 8.13e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18411785    90 VDLVLE-DVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGD 150
Cdd:pfam01106   1 IEEVLEeEIRPALQADGGDIELVDVDDGVVYVRLQGACSGCPSSTMTLKNGIEQALKEKVPE 62
NifU super family cl43242
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain [Posttranslational modification, ...
82-227 5.75e-06

Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG0694:

Pssm-ID: 440458 [Multi-domain]  Cd Length: 176  Bit Score: 45.42  E-value: 5.75e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18411785  82 TFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDE 161
Cdd:COG0694  20 GEVAAPGAPAAAALLLAEAPEVEEDDDVVVVAAVFVAVTDELSGPLLELAIIDAILAAAGGQLTLAAPDAAVAEVLSFHA 99
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18411785 162 EVKQITVEAVNAHLD-ILRPAIKNYGGSVEVLSVEGEDCVVKYVG--------PESIGMGIQAAIKEKFKDISNV 227
Cdd:COG0694 100 LTDAELEERIEEVLDeEIRPALASDGGDIELVDVEDGVVYVRLGGacsgcpssTMTLKNGIERALKERVPEVKEV 174
 
Name Accession Description Interval E-value
NifU pfam01106
NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common ...
90-150 8.13e-24

NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.


Pssm-ID: 460066 [Multi-domain]  Cd Length: 67  Bit Score: 90.19  E-value: 8.13e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18411785    90 VDLVLE-DVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGD 150
Cdd:pfam01106   1 IEEVLEeEIRPALQADGGDIELVDVDDGVVYVRLQGACSGCPSSTMTLKNGIEQALKEKVPE 62
NifU COG0694
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain [Posttranslational modification, ...
88-150 1.46e-23

Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440458 [Multi-domain]  Cd Length: 176  Bit Score: 93.18  E-value: 1.46e-23
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 18411785  88 QNVDLVLED-VRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGD 150
Cdd:COG0694 107 ERIEEVLDEeIRPALASDGGDIELVDVEDGVVYVRLGGACSGCPSSTMTLKNGIERALKERVPE 170
PRK11190 PRK11190
iron-sulfur cluster biogenesis protein NfuA;
90-162 5.33e-06

iron-sulfur cluster biogenesis protein NfuA;


Pssm-ID: 183027 [Multi-domain]  Cd Length: 192  Bit Score: 45.39  E-value: 5.33e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18411785   90 VDLVLE-DVRPFLISDGGNVDVVSV-EDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDEE 162
Cdd:PRK11190 111 VEYVLQsQINPQLAGHGGRVSLMEItEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPGELKGVRDLTEHQ 185
NifU COG0694
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain [Posttranslational modification, ...
82-227 5.75e-06

Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440458 [Multi-domain]  Cd Length: 176  Bit Score: 45.42  E-value: 5.75e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18411785  82 TFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDE 161
Cdd:COG0694  20 GEVAAPGAPAAAALLLAEAPEVEEDDDVVVVAAVFVAVTDELSGPLLELAIIDAILAAAGGQLTLAAPDAAVAEVLSFHA 99
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18411785 162 EVKQITVEAVNAHLD-ILRPAIKNYGGSVEVLSVEGEDCVVKYVG--------PESIGMGIQAAIKEKFKDISNV 227
Cdd:COG0694 100 LTDAELEERIEEVLDeEIRPALASDGGDIELVDVEDGVVYVRLGGacsgcpssTMTLKNGIERALKERVPEVKEV 174
NifU pfam01106
NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common ...
155-227 3.72e-04

NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.


Pssm-ID: 460066 [Multi-domain]  Cd Length: 67  Bit Score: 37.80  E-value: 3.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18411785   155 IRQVFDEEVkqitveavnahldilRPAIKNYGGSVEVLSVEGEDCVVKYVGP--------ESIGMGIQAAIKEKFKDISN 226
Cdd:pfam01106   1 IEEVLEEEI---------------RPALQADGGDIELVDVDDGVVYVRLQGAcsgcpsstMTLKNGIEQALKEKVPEVKR 65

                  .
gi 18411785   227 V 227
Cdd:pfam01106  66 V 66
 
Name Accession Description Interval E-value
NifU pfam01106
NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common ...
90-150 8.13e-24

NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.


Pssm-ID: 460066 [Multi-domain]  Cd Length: 67  Bit Score: 90.19  E-value: 8.13e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18411785    90 VDLVLE-DVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGD 150
Cdd:pfam01106   1 IEEVLEeEIRPALQADGGDIELVDVDDGVVYVRLQGACSGCPSSTMTLKNGIEQALKEKVPE 62
NifU COG0694
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain [Posttranslational modification, ...
88-150 1.46e-23

Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440458 [Multi-domain]  Cd Length: 176  Bit Score: 93.18  E-value: 1.46e-23
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 18411785  88 QNVDLVLED-VRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGD 150
Cdd:COG0694 107 ERIEEVLDEeIRPALASDGGDIELVDVEDGVVYVRLGGACSGCPSSTMTLKNGIERALKERVPE 170
PRK11190 PRK11190
iron-sulfur cluster biogenesis protein NfuA;
90-162 5.33e-06

iron-sulfur cluster biogenesis protein NfuA;


Pssm-ID: 183027 [Multi-domain]  Cd Length: 192  Bit Score: 45.39  E-value: 5.33e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18411785   90 VDLVLE-DVRPFLISDGGNVDVVSV-EDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDEE 162
Cdd:PRK11190 111 VEYVLQsQINPQLAGHGGRVSLMEItEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPGELKGVRDLTEHQ 185
NifU COG0694
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain [Posttranslational modification, ...
82-227 5.75e-06

Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440458 [Multi-domain]  Cd Length: 176  Bit Score: 45.42  E-value: 5.75e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18411785  82 TFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDE 161
Cdd:COG0694  20 GEVAAPGAPAAAALLLAEAPEVEEDDDVVVVAAVFVAVTDELSGPLLELAIIDAILAAAGGQLTLAAPDAAVAEVLSFHA 99
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18411785 162 EVKQITVEAVNAHLD-ILRPAIKNYGGSVEVLSVEGEDCVVKYVG--------PESIGMGIQAAIKEKFKDISNV 227
Cdd:COG0694 100 LTDAELEERIEEVLDeEIRPALASDGGDIELVDVEDGVVYVRLGGacsgcpssTMTLKNGIERALKERVPEVKEV 174
NifU pfam01106
NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common ...
155-227 3.72e-04

NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.


Pssm-ID: 460066 [Multi-domain]  Cd Length: 67  Bit Score: 37.80  E-value: 3.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18411785   155 IRQVFDEEVkqitveavnahldilRPAIKNYGGSVEVLSVEGEDCVVKYVGP--------ESIGMGIQAAIKEKFKDISN 226
Cdd:pfam01106   1 IEEVLEEEI---------------RPALQADGGDIELVDVDDGVVYVRLQGAcsgcpsstMTLKNGIEQALKEKVPEVKR 65

                  .
gi 18411785   227 V 227
Cdd:pfam01106  66 V 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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