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Conserved domains on  [gi|18404804|ref|NP_566789|]
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Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

Protein Classification

RCC1 domain-containing protein( domain architecture ID 11474102)

RCC1 (regulator of chromosome condensation) domain-containing protein similar to Arabidopsis UVR8 (UV RESISTANCE LOCUS 8), which plays an important role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway.

Gene Ontology:  GO:0003682|GO:0005085
PubMed:  9510255|18442486

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 46-412 1.34e-61

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 202.90  E-value: 1.34e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404804  46 SQAVAGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVriIQAAAGAARTMLISDDGKVYACGKESFG 125
Cdd:COG5184   1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPGLSNV--VAVAAGGDHTCALKADGTVWCWGNNSYG 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404804 126 EAeygGQGTK-PVTTPQLVTSLKNifVVQAAIGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPLLGPLENvpV 204
Cdd:COG5184  79 QL---GDGTTtDRTTPVKVPGLTG--VVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGLSG--V 151

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404804 205 VQIAAGYCYLLALAcqPNGmSVYSVGCGLGGKLGHGSRTDEKYPRvieqfQILNLQP-RVVAAGAWHAAVVGQDGRVCTW 283
Cdd:COG5184 152 VAIAAGGYHTCALK--SDG-TVWCWGANSYGQLGDGTTTDRPTPV-----QVGGLSGvVAVAAGGDHSCALKSDGTVWCW 223

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404804 284 GWGRYGCLGHGNEECESVPKVVEGLSHVKAvhVATGDYTTFVVSDDGDVYSFGCGESASLGHhpsfdeqGNRhANVLSPT 363
Cdd:COG5184 224 GSNSSGQLGDGTTTDRATPVQVAGLTGVVA--IAAGGSHTCALKSDGTVWCWGDNSYGQLGD-------GTT-TDRSTPV 293

                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*....
gi 18404804 364 VVTSLKQVnermVQISLTNSiywnaHTFALTESGKLFAFGAGDQGQLGT 412
Cdd:COG5184 294 KVPGLSGV----VAVAAGSS-----HTCALLTDGTVWCWGDNAYGQLGD 333
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 46-412 1.34e-61

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 202.90  E-value: 1.34e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404804  46 SQAVAGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVriIQAAAGAARTMLISDDGKVYACGKESFG 125
Cdd:COG5184   1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPGLSNV--VAVAAGGDHTCALKADGTVWCWGNNSYG 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404804 126 EAeygGQGTK-PVTTPQLVTSLKNifVVQAAIGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPLLGPLENvpV 204
Cdd:COG5184  79 QL---GDGTTtDRTTPVKVPGLTG--VVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGLSG--V 151

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404804 205 VQIAAGYCYLLALAcqPNGmSVYSVGCGLGGKLGHGSRTDEKYPRvieqfQILNLQP-RVVAAGAWHAAVVGQDGRVCTW 283
Cdd:COG5184 152 VAIAAGGYHTCALK--SDG-TVWCWGANSYGQLGDGTTTDRPTPV-----QVGGLSGvVAVAAGGDHSCALKSDGTVWCW 223

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404804 284 GWGRYGCLGHGNEECESVPKVVEGLSHVKAvhVATGDYTTFVVSDDGDVYSFGCGESASLGHhpsfdeqGNRhANVLSPT 363
Cdd:COG5184 224 GSNSSGQLGDGTTTDRATPVQVAGLTGVVA--IAAGGSHTCALKSDGTVWCWGDNSYGQLGD-------GTT-TDRSTPV 293

                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*....
gi 18404804 364 VVTSLKQVnermVQISLTNSiywnaHTFALTESGKLFAFGAGDQGQLGT 412
Cdd:COG5184 294 KVPGLSGV----VAVAAGSS-----HTCALLTDGTVWCWGDNAYGQLGD 333
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
277-326 1.28e-14

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 67.54  E-value: 1.28e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 18404804   277 DGRVCTWGWGRYGCLGHGNEECESVPKVVEGLSHVKAVHVATGDYTTFVV 326
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 46-412 1.34e-61

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 202.90  E-value: 1.34e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404804  46 SQAVAGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVriIQAAAGAARTMLISDDGKVYACGKESFG 125
Cdd:COG5184   1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPGLSNV--VAVAAGGDHTCALKADGTVWCWGNNSYG 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404804 126 EAeygGQGTK-PVTTPQLVTSLKNifVVQAAIGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPLLGPLENvpV 204
Cdd:COG5184  79 QL---GDGTTtDRTTPVKVPGLTG--VVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGLSG--V 151

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404804 205 VQIAAGYCYLLALAcqPNGmSVYSVGCGLGGKLGHGSRTDEKYPRvieqfQILNLQP-RVVAAGAWHAAVVGQDGRVCTW 283
Cdd:COG5184 152 VAIAAGGYHTCALK--SDG-TVWCWGANSYGQLGDGTTTDRPTPV-----QVGGLSGvVAVAAGGDHSCALKSDGTVWCW 223

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404804 284 GWGRYGCLGHGNEECESVPKVVEGLSHVKAvhVATGDYTTFVVSDDGDVYSFGCGESASLGHhpsfdeqGNRhANVLSPT 363
Cdd:COG5184 224 GSNSSGQLGDGTTTDRATPVQVAGLTGVVA--IAAGGSHTCALKSDGTVWCWGDNSYGQLGD-------GTT-TDRSTPV 293

                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*....
gi 18404804 364 VVTSLKQVnermVQISLTNSiywnaHTFALTESGKLFAFGAGDQGQLGT 412
Cdd:COG5184 294 KVPGLSGV----VAVAAGSS-----HTCALLTDGTVWCWGDNAYGQLGD 333
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 50-302 9.69e-36

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 134.72  E-value: 9.69e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404804  50 AGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDeaRIQPVRSLQGVR-IIQAAAGAARTMLISDDGKVYACGKESFGEAe 128
Cdd:COG5184 105 AGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTN--RLTPVQVDAGLSgVVAIAAGGYHTCALKSDGTVWCWGANSYGQL- 181

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404804 129 ygGQGTKP-VTTPQLVTSLKNifVVQAAIGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPLLGPlenVPVVQI 207
Cdd:COG5184 182 --GDGTTTdRPTPVQVGGLSG--VVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQVAGL---TGVVAI 254

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18404804 208 AAGY---CYLLAlacqpNGmSVYSVGCGLGGKLGHGSRTDEKYPRvieqfQILNLQP-RVVAAGAWHAAVVGQDGRVCTW 283
Cdd:COG5184 255 AAGGshtCALKS-----DG-TVWCWGDNSYGQLGDGTTTDRSTPV-----KVPGLSGvVAVAAGSSHTCALLTDGTVWCW 323

                       250
                ....*....|....*....
gi 18404804 284 GWGRYGCLGHGNEECESVP 302
Cdd:COG5184 324 GDNAYGQLGDGTTTDRSTP 342
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
277-326 1.28e-14

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 67.54  E-value: 1.28e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 18404804   277 DGRVCTWGWGRYGCLGHGNEECESVPKVVEGLSHVKAVHVATGDYTTFVV 326
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
61-110 1.15e-10

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 56.37  E-value: 1.15e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 18404804    61 KGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVRIIQAAAGAARTMLI 110
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
167-217 5.72e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 43.27  E-value: 5.72e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 18404804   167 EGKVYTFSWGNDGRLGHQTEAADVEPRPLLGpLENVPVVQIAAGYCYLLAL 217
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEG-LSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
113-164 1.74e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 41.73  E-value: 1.74e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 18404804   113 DGKVYacgkeSFGEAEYG--GQGT-KPVTTPQLVTSLKNIFVVQAAIGNYFTAVL 164
Cdd:pfam00415   1 DGRVY-----TWGRNDYGqlGLGTtENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
47-74 1.77e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 38.56  E-value: 1.77e-04
                          10        20
                  ....*....|....*....|....*...
gi 18404804    47 QAVAGPGHSVAVTSKGEVYTFGYNNSGQ 74
Cdd:pfam13540   3 SVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
225-274 3.46e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 35.19  E-value: 3.46e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 18404804   225 SVYSVGCGLGGKLGHGSRTDEKYPRVIEQFQILNLQprVVAAGAWHAAVV 274
Cdd:pfam00415   3 RVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVV--QVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
97-125 4.94e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 34.32  E-value: 4.94e-03
                          10        20
                  ....*....|....*....|....*....
gi 18404804    97 IIQAAAGAARTMLISDDGKVYACGKESFG 125
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYG 29
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
314-340 8.24e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 33.94  E-value: 8.24e-03
                          10        20
                  ....*....|....*....|....*..
gi 18404804   314 VHVATGDYTTFVVSDDGDVYSFGCGES 340
Cdd:pfam13540   2 VSVAAGDNHTLALTSDGRVYCWGDNSY 28
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
396-427 9.93e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 34.03  E-value: 9.93e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 18404804   396 SGKLFAFGAGDQGQLGTelgKNQKERCVPEKV 427
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGL---GTTENVLVPQKV 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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