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Conserved domains on  [gi|18397408|ref|NP_566264|]
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Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

Protein Classification

heavy-metal-associated domain-containing protein( domain architecture ID 10449815)

heavy-metal-associated domain-containing protein may function as a heavy metal transporter and/or detoxification protein; such as heavy metal-associated isoprenylated plant proteins

Gene Ontology:  GO:0046872
PubMed:  12443926|8905098

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
HMA pfam00403
Heavy-metal-associated domain;
6-63 4.24e-05

Heavy-metal-associated domain;


:

Pssm-ID: 459804 [Multi-domain]  Cd Length: 58  Bit Score: 38.75  E-value: 4.24e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 18397408     6 VEIKVDINCGKCNSAIMEAVTEIEGVNHISLDEGNSILTVVGTMDPVCVATRLKKIKQ 63
Cdd:pfam00403   1 TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK 58
 
Name Accession Description Interval E-value
HMA pfam00403
Heavy-metal-associated domain;
6-63 4.24e-05

Heavy-metal-associated domain;


Pssm-ID: 459804 [Multi-domain]  Cd Length: 58  Bit Score: 38.75  E-value: 4.24e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 18397408     6 VEIKVDINCGKCNSAIMEAVTEIEGVNHISLDEGNSILTVVGTMDPVCVATRLKKIKQ 63
Cdd:pfam00403   1 TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK 58
PLN02957 PLN02957
copper, zinc superoxide dismutase
 7-52 1.68e-03

copper, zinc superoxide dismutase


Pssm-ID: 215516 [Multi-domain]  Cd Length: 238  Bit Score: 36.65  E-value: 1.68e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 18397408    7 EIKVDINCGKCNSAIMEAVTEIEGVNHISLDEGNSILTVVGTmDPV 52
Cdd:PLN02957   9 EFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS-SPV 53
 
Name Accession Description Interval E-value
HMA pfam00403
Heavy-metal-associated domain;
6-63 4.24e-05

Heavy-metal-associated domain;


Pssm-ID: 459804 [Multi-domain]  Cd Length: 58  Bit Score: 38.75  E-value: 4.24e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 18397408     6 VEIKVDINCGKCNSAIMEAVTEIEGVNHISLDEGNSILTVVGTMDPVCVATRLKKIKQ 63
Cdd:pfam00403   1 TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK 58
PLN02957 PLN02957
copper, zinc superoxide dismutase
 7-52 1.68e-03

copper, zinc superoxide dismutase


Pssm-ID: 215516 [Multi-domain]  Cd Length: 238  Bit Score: 36.65  E-value: 1.68e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 18397408    7 EIKVDINCGKCNSAIMEAVTEIEGVNHISLDEGNSILTVVGTmDPV 52
Cdd:PLN02957   9 EFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS-SPV 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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