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Conserved domains on  [gi|18396341|ref|NP_566184|]
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ARM repeat superfamily protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG5096 super family cl34899
Vesicle coat complex, various subunits [Intracellular trafficking, secretion, and vesicular ...
150-218 4.16e-03

Vesicle coat complex, various subunits [Intracellular trafficking, secretion, and vesicular transport];


The actual alignment was detected with superfamily member COG5096:

Pssm-ID: 227427 [Multi-domain]  Cd Length: 757  Bit Score: 39.33  E-value: 4.16e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18396341 150 LNCLVRFLNGKDAKTRQNAAFCIREVIAVDKRYVYAltdvEGACEGLVKIIRDSVST--SSTKASLMVIYR 218
Cdd:COG5096 129 IDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHE----LGLIDILKELVADSDPIviANALASLAEIDP 195
 
Name Accession Description Interval E-value
COG5096 COG5096
Vesicle coat complex, various subunits [Intracellular trafficking, secretion, and vesicular ...
150-218 4.16e-03

Vesicle coat complex, various subunits [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 227427 [Multi-domain]  Cd Length: 757  Bit Score: 39.33  E-value: 4.16e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18396341 150 LNCLVRFLNGKDAKTRQNAAFCIREVIAVDKRYVYAltdvEGACEGLVKIIRDSVST--SSTKASLMVIYR 218
Cdd:COG5096 129 IDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHE----LGLIDILKELVADSDPIviANALASLAEIDP 195
 
Name Accession Description Interval E-value
COG5096 COG5096
Vesicle coat complex, various subunits [Intracellular trafficking, secretion, and vesicular ...
150-218 4.16e-03

Vesicle coat complex, various subunits [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 227427 [Multi-domain]  Cd Length: 757  Bit Score: 39.33  E-value: 4.16e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18396341 150 LNCLVRFLNGKDAKTRQNAAFCIREVIAVDKRYVYAltdvEGACEGLVKIIRDSVST--SSTKASLMVIYR 218
Cdd:COG5096 129 IDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHE----LGLIDILKELVADSDPIviANALASLAEIDP 195
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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