Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in ...
81-289
2.18e-78
Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in plant cell walls. IRX15/IRX15-L precise role in xylan biosynthesis is unknown. Glucuronoxylan methyltransferase (GXMT) catalyzes 4-O-methylation of the glucuronic acid substituents of this polysaccharide. AtGXMT1 specifically transfers the methyl group from S-adenosyl-l-methionine to O-4 of alpha-d-glucopyranosyluronic acid residues that are linked to O-2 of the xylan backbone. The function of members of this family in animals and fungi is not known.
The actual alignment was detected with superfamily member TIGR01627:
Pssm-ID: 383809 Cd Length: 225 Bit Score: 238.65 E-value: 2.18e-78
uncharacterized plant-specific domain TIGR01627; This model represents an uncharacterized ...
81-289
2.18e-78
uncharacterized plant-specific domain TIGR01627; This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Pssm-ID: 130688 Cd Length: 225 Bit Score: 238.65 E-value: 2.18e-78
Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in ...
98-287
3.60e-75
Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in plant cell walls. IRX15/IRX15-L precise role in xylan biosynthesis is unknown. Glucuronoxylan methyltransferase (GXMT) catalyzes 4-O-methylation of the glucuronic acid substituents of this polysaccharide. AtGXMT1 specifically transfers the methyl group from S-adenosyl-l-methionine to O-4 of alpha-d-glucopyranosyluronic acid residues that are linked to O-2 of the xylan backbone. The function of members of this family in animals and fungi is not known.
Pssm-ID: 368048 Cd Length: 177 Bit Score: 228.92 E-value: 3.60e-75
uncharacterized plant-specific domain TIGR01627; This model represents an uncharacterized ...
81-289
2.18e-78
uncharacterized plant-specific domain TIGR01627; This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Pssm-ID: 130688 Cd Length: 225 Bit Score: 238.65 E-value: 2.18e-78
Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in ...
98-287
3.60e-75
Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in plant cell walls. IRX15/IRX15-L precise role in xylan biosynthesis is unknown. Glucuronoxylan methyltransferase (GXMT) catalyzes 4-O-methylation of the glucuronic acid substituents of this polysaccharide. AtGXMT1 specifically transfers the methyl group from S-adenosyl-l-methionine to O-4 of alpha-d-glucopyranosyluronic acid residues that are linked to O-2 of the xylan backbone. The function of members of this family in animals and fungi is not known.
Pssm-ID: 368048 Cd Length: 177 Bit Score: 228.92 E-value: 3.60e-75
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
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if a domain or superfamily has been annotated with functional sites (conserved features),
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click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.
The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
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(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
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(labeled illustration) Four types of hits can be shown, as available,
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specific hits meet or exceed a domain-specific e-value threshold
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