NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|18395620|ref|NP_565306|]
View 

Late embryogenesis abundant protein (LEA) family protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PLN00089 super family cl02879
fucoxanthin-chlorophyll a/c binding protein; Provisional
 1-70 1.83e-10

fucoxanthin-chlorophyll a/c binding protein; Provisional


The actual alignment was detected with superfamily member PLN00170:

Pssm-ID: 470693 [Multi-domain]  Cd Length: 255  Bit Score: 58.40  E-value: 1.83e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18395620    1 MAMSISGAVFNGLGSSFLISrGKRS-----GVGLGVVAMRVgRKNVITSPKCKKSWVPtAVKGDGNSkLDPKWLD 70
Cdd:PLN00170   1 SAAATSGAVLNGLGSSFLTG-GKRSlallvGTGAAKVGART-LLVVAAAAQPKKSWIP-AVKGGGNL-VDPEWLD 71
YtxH pfam12732
YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are ...
 130-186 6.69e-03

YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.


:

Pssm-ID: 432750 [Multi-domain]  Cd Length: 71  Bit Score: 34.11  E-value: 6.69e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18395620   130 FVTEKGKETKKEtasISEKAKDFIvEKAGEIIDIATDVSKKTAKYVGDKAKEVKEAI 186
Cdd:pfam12732  18 LAPKSGKETRKD---LKDKAEDLK-DKAKDLAEEAKEKAEDLKEKVKEKADELKEKV 70
 
Name Accession Description Interval E-value
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 1-70 1.83e-10

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 58.40  E-value: 1.83e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18395620    1 MAMSISGAVFNGLGSSFLISrGKRS-----GVGLGVVAMRVgRKNVITSPKCKKSWVPtAVKGDGNSkLDPKWLD 70
Cdd:PLN00170   1 SAAATSGAVLNGLGSSFLTG-GKRSlallvGTGAAKVGART-LLVVAAAAQPKKSWIP-AVKGGGNL-VDPEWLD 71
YtxH pfam12732
YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are ...
 130-186 6.69e-03

YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.


Pssm-ID: 432750 [Multi-domain]  Cd Length: 71  Bit Score: 34.11  E-value: 6.69e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18395620   130 FVTEKGKETKKEtasISEKAKDFIvEKAGEIIDIATDVSKKTAKYVGDKAKEVKEAI 186
Cdd:pfam12732  18 LAPKSGKETRKD---LKDKAEDLK-DKAKDLAEEAKEKAEDLKEKVKEKADELKEKV 70
 
Name Accession Description Interval E-value
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 1-70 1.83e-10

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 58.40  E-value: 1.83e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18395620    1 MAMSISGAVFNGLGSSFLISrGKRS-----GVGLGVVAMRVgRKNVITSPKCKKSWVPtAVKGDGNSkLDPKWLD 70
Cdd:PLN00170   1 SAAATSGAVLNGLGSSFLTG-GKRSlallvGTGAAKVGART-LLVVAAAAQPKKSWIP-AVKGGGNL-VDPEWLD 71
YtxH pfam12732
YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are ...
 130-186 6.69e-03

YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.


Pssm-ID: 432750 [Multi-domain]  Cd Length: 71  Bit Score: 34.11  E-value: 6.69e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18395620   130 FVTEKGKETKKEtasISEKAKDFIvEKAGEIIDIATDVSKKTAKYVGDKAKEVKEAI 186
Cdd:pfam12732  18 LAPKSGKETRKD---LKDKAEDLK-DKAKDLAEEAKEKAEDLKEKVKEKADELKEKV 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH