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Conserved domains on  [gi|18379145|ref|NP_565250|]
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Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]

Protein Classification

LEA type 2 family protein( domain architecture ID 10504605)

late embryogenesis abundant (LEA) type 2 family protein plays a role in tolerance to drought and other abiotic stresses in plants

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LEA_2 pfam03168
Late embryogenesis abundant protein; Different types of LEA proteins are expressed at ...
 111-208 2.08e-12

Late embryogenesis abundant protein; Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.


:

Pssm-ID: 427176  Cd Length: 99  Bit Score: 61.18  E-value: 2.08e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18379145   111 NPNKVGIRYGESSFTVMYKGMPLGRAT-VPGFYQDAHSTKNVEATISVDRVNLMQahaadLVRDASLNDRVELTVRGDVG 189
Cdd:pfam03168   6 NPNSFGLPYDGLDYDLSYNGQPLASGGsPQPGTIPAGGTTTLEVPVSVSYDDLVR-----LLRDLISVVGLELPYTLRGR 80

                          90
                  ....*....|....*....
gi 18379145   190 AKIRVMNFDSPGVQVSVNC 208
Cdd:pfam03168  81 LKVGGPFFGSRTVPLSVSG 99
 
Name Accession Description Interval E-value
LEA_2 pfam03168
Late embryogenesis abundant protein; Different types of LEA proteins are expressed at ...
 111-208 2.08e-12

Late embryogenesis abundant protein; Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.


Pssm-ID: 427176  Cd Length: 99  Bit Score: 61.18  E-value: 2.08e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18379145   111 NPNKVGIRYGESSFTVMYKGMPLGRAT-VPGFYQDAHSTKNVEATISVDRVNLMQahaadLVRDASLNDRVELTVRGDVG 189
Cdd:pfam03168   6 NPNSFGLPYDGLDYDLSYNGQPLASGGsPQPGTIPAGGTTTLEVPVSVSYDDLVR-----LLRDLISVVGLELPYTLRGR 80

                          90
                  ....*....|....*....
gi 18379145   190 AKIRVMNFDSPGVQVSVNC 208
Cdd:pfam03168  81 LKVGGPFFGSRTVPLSVSG 99
PLN03160 PLN03160
uncharacterized protein; Provisional
 69-224 2.11e-03

uncharacterized protein; Provisional


Pssm-ID: 215609  Cd Length: 219  Bit Score: 38.19  E-value: 2.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18379145   69 KKPQFDLQQVAVVYMGISNPSAVLDPTTASLSLTIrmlfTAVNPNKVGIRYGESSFTVMYKGMPLGRATVPGFYQDAHST 148
Cdd:PLN03160  65 KDPVIKMNGVTVTKLELINNTTLRPGTNITLIADV----SVKNPNVASFKYSNTTTTIYYGGTVVGEARTPPGKAKARRT 140

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18379145  149 KNVEATISVDRVNLMQahAADLVRDASlNDRVELTVRGDVGAKIRVMNFDSPGVQVSVNCGIGISPRKQALIYKQC 224
Cdd:PLN03160 141 MRMNVTVDIIPDKILS--VPGLLTDIS-SGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTMTVNITSQAIQGQKC 213
 
Name Accession Description Interval E-value
LEA_2 pfam03168
Late embryogenesis abundant protein; Different types of LEA proteins are expressed at ...
 111-208 2.08e-12

Late embryogenesis abundant protein; Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.


Pssm-ID: 427176  Cd Length: 99  Bit Score: 61.18  E-value: 2.08e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18379145   111 NPNKVGIRYGESSFTVMYKGMPLGRAT-VPGFYQDAHSTKNVEATISVDRVNLMQahaadLVRDASLNDRVELTVRGDVG 189
Cdd:pfam03168   6 NPNSFGLPYDGLDYDLSYNGQPLASGGsPQPGTIPAGGTTTLEVPVSVSYDDLVR-----LLRDLISVVGLELPYTLRGR 80

                          90
                  ....*....|....*....
gi 18379145   190 AKIRVMNFDSPGVQVSVNC 208
Cdd:pfam03168  81 LKVGGPFFGSRTVPLSVSG 99
PLN03160 PLN03160
uncharacterized protein; Provisional
 69-224 2.11e-03

uncharacterized protein; Provisional


Pssm-ID: 215609  Cd Length: 219  Bit Score: 38.19  E-value: 2.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18379145   69 KKPQFDLQQVAVVYMGISNPSAVLDPTTASLSLTIrmlfTAVNPNKVGIRYGESSFTVMYKGMPLGRATVPGFYQDAHST 148
Cdd:PLN03160  65 KDPVIKMNGVTVTKLELINNTTLRPGTNITLIADV----SVKNPNVASFKYSNTTTTIYYGGTVVGEARTPPGKAKARRT 140

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18379145  149 KNVEATISVDRVNLMQahAADLVRDASlNDRVELTVRGDVGAKIRVMNFDSPGVQVSVNCGIGISPRKQALIYKQC 224
Cdd:PLN03160 141 MRMNVTVDIIPDKILS--VPGLLTDIS-SGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTMTVNITSQAIQGQKC 213
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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