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Conserved domains on  [gi|18410833|ref|NP_565109|]
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Ribosomal protein L31 [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmE super family cl00377
50S ribosomal protein L31; Reviewed
 50-115 2.85e-26

50S ribosomal protein L31; Reviewed


The actual alignment was detected with superfamily member CHL00136:

Pssm-ID: 469748  Cd Length: 68  Bit Score: 93.95  E-value: 2.85e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18410833   50 KKELHPEFHEDAKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGnrSALMVDAD-QVEKFRKRFAG 115
Cdd:CHL00136   3 KKNIHPQWFPETKVYCDGQLVMTVGSTKPELNVDIWSGNHPFYTG--SQKIIDTEgRVERFMKKYGL 67
 
Name Accession Description Interval E-value
rpl31 CHL00136
ribosomal protein L31; Validated
 50-115 2.85e-26

ribosomal protein L31; Validated


Pssm-ID: 177058  Cd Length: 68  Bit Score: 93.95  E-value: 2.85e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18410833   50 KKELHPEFHEDAKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGnrSALMVDAD-QVEKFRKRFAG 115
Cdd:CHL00136   3 KKNIHPQWFPETKVYCDGQLVMTVGSTKPELNVDIWSGNHPFYTG--SQKIIDTEgRVERFMKKYGL 67
Ribosomal_L31 pfam01197
Ribosomal protein L31;
50-114 1.40e-19

Ribosomal protein L31;


Pssm-ID: 460107  Cd Length: 65  Bit Score: 76.68  E-value: 1.40e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18410833    50 KKELHPEFHEdAKVYCNGELVMTTGGTKKEYV-VDVWSGNHPFYLGnRSALMVDADQVEKFRKRFA 114
Cdd:pfam01197   2 KKGIHPEYRE-VTVTCTCGNTFLTRSTEYPEIkVDVCSACHPFYTG-KQKLVDTAGRVEKFNKRYG 65
RpmE COG0254
Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 ...
 50-118 4.05e-17

Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440024  Cd Length: 72  Bit Score: 70.56  E-value: 4.05e-17
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18410833  50 KKELHPEFHEdAKVYCNGELVMTTGGT--KKEYVVDVWSGNHPFYLGNRSalMVD-ADQVEKFRKRFAGLSE 118
Cdd:COG0254   2 KKGIHPEYRE-VVVTCSCGNEFLTRSTleYPEIKVDVCSACHPFYTGKQK--IVDtAGRVEKFNKRYGKFGK 70
L31 TIGR00105
ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ...
 50-116 1.02e-15

ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272907  Cd Length: 68  Bit Score: 66.93  E-value: 1.02e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410833    50 KKELHPEFHEdAKVYCNGELVMTTGGTKKEYV--VDVWSGNHPFYLGnrSALMVDAD-QVEKFRKRFAGL 116
Cdd:TIGR00105   2 KKDIHPDYHE-ITVTCTCGNVFTTRSTWGKETlnLDICSKCHPFYTG--KQKIVDTGgRVDKFNKKFGGL 68
 
Name Accession Description Interval E-value
rpl31 CHL00136
ribosomal protein L31; Validated
 50-115 2.85e-26

ribosomal protein L31; Validated


Pssm-ID: 177058  Cd Length: 68  Bit Score: 93.95  E-value: 2.85e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18410833   50 KKELHPEFHEDAKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGnrSALMVDAD-QVEKFRKRFAG 115
Cdd:CHL00136   3 KKNIHPQWFPETKVYCDGQLVMTVGSTKPELNVDIWSGNHPFYTG--SQKIIDTEgRVERFMKKYGL 67
rpmE PRK00528
50S ribosomal protein L31; Reviewed
 50-116 1.14e-21

50S ribosomal protein L31; Reviewed


Pssm-ID: 179057  Cd Length: 71  Bit Score: 82.31  E-value: 1.14e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410833   50 KKELHPEFHEDAKVYCNGELVMTT---GGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGL 116
Cdd:PRK00528   2 KKDIHPDYHPIKVVMTDGTEYETRstwGKTGPELRLDIDSGNHPAWTGGTQKLLDTGGRVAKFNKKFGGL 71
Ribosomal_L31 pfam01197
Ribosomal protein L31;
50-114 1.40e-19

Ribosomal protein L31;


Pssm-ID: 460107  Cd Length: 65  Bit Score: 76.68  E-value: 1.40e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18410833    50 KKELHPEFHEdAKVYCNGELVMTTGGTKKEYV-VDVWSGNHPFYLGnRSALMVDADQVEKFRKRFA 114
Cdd:pfam01197   2 KKGIHPEYRE-VTVTCTCGNTFLTRSTEYPEIkVDVCSACHPFYTG-KQKLVDTAGRVEKFNKRYG 65
RpmE COG0254
Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 ...
 50-118 4.05e-17

Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440024  Cd Length: 72  Bit Score: 70.56  E-value: 4.05e-17
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18410833  50 KKELHPEFHEdAKVYCNGELVMTTGGT--KKEYVVDVWSGNHPFYLGNRSalMVD-ADQVEKFRKRFAGLSE 118
Cdd:COG0254   2 KKGIHPEYRE-VVVTCSCGNEFLTRSTleYPEIKVDVCSACHPFYTGKQK--IVDtAGRVEKFNKRYGKFGK 70
L31 TIGR00105
ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ...
 50-116 1.02e-15

ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272907  Cd Length: 68  Bit Score: 66.93  E-value: 1.02e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410833    50 KKELHPEFHEdAKVYCNGELVMTTGGTKKEYV--VDVWSGNHPFYLGnrSALMVDAD-QVEKFRKRFAGL 116
Cdd:TIGR00105   2 KKDIHPDYHE-ITVTCTCGNVFTTRSTWGKETlnLDICSKCHPFYTG--KQKIVDTGgRVDKFNKKFGGL 68
rpmE PRK00019
50S ribosomal protein L31; Reviewed
 50-114 2.42e-13

50S ribosomal protein L31; Reviewed


Pssm-ID: 234576  Cd Length: 72  Bit Score: 60.71  E-value: 2.42e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18410833   50 KKELHPEFHEdAKVYCNGELVMTTGGT--KKEYVVDVWSGNHPFYLGNRSalMVD-ADQVEKFRKRFA 114
Cdd:PRK00019   2 KKDIHPKYEE-VTVTCSCGNVFETRSTlgKDEINVDVCSKCHPFYTGKQK--IVDtGGRVERFNKRFG 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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