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Conserved domains on  [gi|18410230|ref|NP_565050|]
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Glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana]

Protein Classification

PLN02785 family protein( domain architecture ID 11477138)

PLN02785 family protein

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PLN02785 PLN02785
Protein HOTHEAD
18-594 0e+00

Protein HOTHEAD


:

Pssm-ID: 215420 [Multi-domain]  Cd Length: 587  Bit Score: 1117.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230   18 LSSTASKGKEKKSKFNPYRYTFIDKASTFSSSSSSSFSsNGQDSSYDYIVIGGGTAGCPLAATLSQNFSVLVLERGGVPF 97
Cdd:PLN02785  12 LCLPTSSSSQGKSHFTPYRYPFIDKASSFSSSSSSSSS-SGGDSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPF 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230   98 TNANVSFLRNFHIGLADISASSASQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESYPWVERE 177
Cdd:PLN02785  91 GNANVSFLENFHIGLADTSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQ 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  178 IVHQPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAAELLAYANPQKLRVLIYATVQKIVFDT 257
Cdd:PLN02785 171 IVHWPKVAPWQAALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDT 250
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  258 SGTRPRVTGVIFKDEKGNQHQALLSNRKGSEVILSSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPMN 337
Cdd:PLN02785 251 SGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMN 330
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  338 TILVPSKAPIEQSLIQTVGITKMGVYVEASTGFGQSPESIHTHYGIMSNKNELFSTIPAKQRRPEATQAYITRNKYQLHE 417
Cdd:PLN02785 331 SIFVPSKAPVEQSLIQTVGITKMGVYIEASSGFGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHE 410
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  418 AFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTSNRFLNYTQCDKQNVHKMLSL 497
Cdd:PLN02785 411 AFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNM 490
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  498 SVKANINLRPKQLNDTKSMAQFCKDTVVTIWHYHGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGR 577
Cdd:PLN02785 491 SVKANINLIPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGR 570
                        570
                 ....*....|....*..
gi 18410230  578 YMGVKILRERLGNKAGV 594
Cdd:PLN02785 571 YMGVKILRERLGRAAGV 587
 
Name Accession Description Interval E-value
PLN02785 PLN02785
Protein HOTHEAD
18-594 0e+00

Protein HOTHEAD


Pssm-ID: 215420 [Multi-domain]  Cd Length: 587  Bit Score: 1117.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230   18 LSSTASKGKEKKSKFNPYRYTFIDKASTFSSSSSSSFSsNGQDSSYDYIVIGGGTAGCPLAATLSQNFSVLVLERGGVPF 97
Cdd:PLN02785  12 LCLPTSSSSQGKSHFTPYRYPFIDKASSFSSSSSSSSS-SGGDSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPF 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230   98 TNANVSFLRNFHIGLADISASSASQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESYPWVERE 177
Cdd:PLN02785  91 GNANVSFLENFHIGLADTSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQ 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  178 IVHQPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAAELLAYANPQKLRVLIYATVQKIVFDT 257
Cdd:PLN02785 171 IVHWPKVAPWQAALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDT 250
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  258 SGTRPRVTGVIFKDEKGNQHQALLSNRKGSEVILSSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPMN 337
Cdd:PLN02785 251 SGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMN 330
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  338 TILVPSKAPIEQSLIQTVGITKMGVYVEASTGFGQSPESIHTHYGIMSNKNELFSTIPAKQRRPEATQAYITRNKYQLHE 417
Cdd:PLN02785 331 SIFVPSKAPVEQSLIQTVGITKMGVYIEASSGFGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHE 410
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  418 AFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTSNRFLNYTQCDKQNVHKMLSL 497
Cdd:PLN02785 411 AFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNM 490
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  498 SVKANINLRPKQLNDTKSMAQFCKDTVVTIWHYHGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGR 577
Cdd:PLN02785 491 SVKANINLIPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGR 570
                        570
                 ....*....|....*..
gi 18410230  578 YMGVKILRERLGNKAGV 594
Cdd:PLN02785 571 YMGVKILRERLGRAAGV 587
BetA COG2303
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ...
60-588 2.10e-68

Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441878 [Multi-domain]  Cd Length: 531  Bit Score: 230.87  E-value: 2.10e-68
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  60 DSSYDYIVIGGGTAGCPLAATLSQN--FSVLVLERGGV---PFTNANVSFLRNFHIGLADISASSASQAFVSTDGVYNAR 134
Cdd:COG2303   2 LEEYDYVIVGAGSAGCVLANRLSEDagLRVLLLEAGGRdddPLIRMPAGYAKLLGNPRYDWRYETEPQPGLNGRRLYWPR 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230 135 ARVLGGGSCINAGFYSRADAA-FVKRA-----GWdpklvkeSY----PW---VEREI--------------VHQPKL-TL 186
Cdd:COG2303  82 GKVLGGSSSINGMIYVRGQPEdFDLWAqlgnqGW-------GYddvlPYfkrAEDNErgadayhgrsgplpVSDPPLpNP 154
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230 187 WQKALRDSLLEVGVRP---FNGftydhvsGTKIGGTIFD---RFGRRHTAAEllAYANPQK----LRVLIYATVQKIVFD 256
Cdd:COG2303 155 LSDAFIEAAEELGIPRaddFNG-------GACEGCGFCQvtcRNGARWSAAR--AYLPPALkrpnLTVRTGALVTRILFD 225
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230 257 tsGTRprVTGVIFKDeKGNQHQAllsnRKGSEVILSSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPM 336
Cdd:COG2303 226 --GGR--ATGVEYRD-DGEEHTV----RAAREVILAAGAINSPQLLLLSGIGPASHLREHGIPVVHDLPGVGRNLQDHLE 296
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230 337 NTILVPSKAPIeqSLIQTVGITKMGV-YVEASTGFGQSpeSIHTHYGIMSNKNEL------FSTIPAKQRRPEATQAYIT 409
Cdd:COG2303 297 VSVVFRFKEPV--TLNKSLRKARIGLqYLLTRSGPLTS--NVAEAGGFFRSDPGLerpdlqFHFLPLGLTPRWGKKALHD 372
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230 410 RNKYQLHeafnGSFIleklaYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTSNRFLNYTQCDkq 489
Cdd:COG2303 373 GHGFTAH----VEQL-----RPESRGRVTLDSADPLGAPLIRPNYLSDENDRRVLVAGVRLAREIAAQPALAPYRGEE-- 441
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230 490 nvhkmlslsvkaninLRPKQLNDTKSMAQFCKDTVVTIWHYHGGCLVGK----VVSPNRKVLGVDRLRVIDGSTFDESPG 565
Cdd:COG2303 442 ---------------ILPGPDVQSDEELAFIRARAYTIYHPVGTCRMGTdpdsVVDPRLRVHGVENLRVVDASVMPTITS 506
                       570       580
                ....*....|....*....|...
gi 18410230 566 TNPQATMMMMGrYMGVKILRERL 588
Cdd:COG2303 507 GNTNAPTIMLA-EKAADMILGDY 528
GMC_oxred_C pfam05199
GMC oxidoreductase; This domain found associated with pfam00732.
431-576 2.04e-28

GMC oxidoreductase; This domain found associated with pfam00732.


Pssm-ID: 398739 [Multi-domain]  Cd Length: 143  Bit Score: 110.56  E-value: 2.04e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230   431 PISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTSNRFLNYTqcdkqnvhkmlSLSVKANINLRPKQL 510
Cdd:pfam05199   1 PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGV-----------ELTPGPVPEVSDAAV 69
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18410230   511 NDTKSMAQFCKDTVVTIWHYHGGCLVGK-----VVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMG 576
Cdd:pfam05199  70 TSDDELLAYIRAAASTSYHPMGTCRMGAdpddaVVDPDLRVHGVDNLRVVDASVFPSSPSGNPTLTIYALA 140
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
63-96 2.61e-03

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 39.99  E-value: 2.61e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 18410230    63 YDYIVIGGGTAGCPLAATLSQ-NFSVLVLERGGVP 96
Cdd:TIGR02032   1 YDVVVVGAGPAGASAAYRLADkGLRVLLLEKKSFP 35
 
Name Accession Description Interval E-value
PLN02785 PLN02785
Protein HOTHEAD
18-594 0e+00

Protein HOTHEAD


Pssm-ID: 215420 [Multi-domain]  Cd Length: 587  Bit Score: 1117.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230   18 LSSTASKGKEKKSKFNPYRYTFIDKASTFSSSSSSSFSsNGQDSSYDYIVIGGGTAGCPLAATLSQNFSVLVLERGGVPF 97
Cdd:PLN02785  12 LCLPTSSSSQGKSHFTPYRYPFIDKASSFSSSSSSSSS-SGGDSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPF 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230   98 TNANVSFLRNFHIGLADISASSASQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESYPWVERE 177
Cdd:PLN02785  91 GNANVSFLENFHIGLADTSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQ 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  178 IVHQPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAAELLAYANPQKLRVLIYATVQKIVFDT 257
Cdd:PLN02785 171 IVHWPKVAPWQAALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDT 250
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  258 SGTRPRVTGVIFKDEKGNQHQALLSNRKGSEVILSSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPMN 337
Cdd:PLN02785 251 SGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMN 330
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  338 TILVPSKAPIEQSLIQTVGITKMGVYVEASTGFGQSPESIHTHYGIMSNKNELFSTIPAKQRRPEATQAYITRNKYQLHE 417
Cdd:PLN02785 331 SIFVPSKAPVEQSLIQTVGITKMGVYIEASSGFGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHE 410
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  418 AFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTSNRFLNYTQCDKQNVHKMLSL 497
Cdd:PLN02785 411 AFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNM 490
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  498 SVKANINLRPKQLNDTKSMAQFCKDTVVTIWHYHGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGR 577
Cdd:PLN02785 491 SVKANINLIPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGR 570
                        570
                 ....*....|....*..
gi 18410230  578 YMGVKILRERLGNKAGV 594
Cdd:PLN02785 571 YMGVKILRERLGRAAGV 587
BetA COG2303
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ...
60-588 2.10e-68

Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441878 [Multi-domain]  Cd Length: 531  Bit Score: 230.87  E-value: 2.10e-68
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  60 DSSYDYIVIGGGTAGCPLAATLSQN--FSVLVLERGGV---PFTNANVSFLRNFHIGLADISASSASQAFVSTDGVYNAR 134
Cdd:COG2303   2 LEEYDYVIVGAGSAGCVLANRLSEDagLRVLLLEAGGRdddPLIRMPAGYAKLLGNPRYDWRYETEPQPGLNGRRLYWPR 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230 135 ARVLGGGSCINAGFYSRADAA-FVKRA-----GWdpklvkeSY----PW---VEREI--------------VHQPKL-TL 186
Cdd:COG2303  82 GKVLGGSSSINGMIYVRGQPEdFDLWAqlgnqGW-------GYddvlPYfkrAEDNErgadayhgrsgplpVSDPPLpNP 154
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230 187 WQKALRDSLLEVGVRP---FNGftydhvsGTKIGGTIFD---RFGRRHTAAEllAYANPQK----LRVLIYATVQKIVFD 256
Cdd:COG2303 155 LSDAFIEAAEELGIPRaddFNG-------GACEGCGFCQvtcRNGARWSAAR--AYLPPALkrpnLTVRTGALVTRILFD 225
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230 257 tsGTRprVTGVIFKDeKGNQHQAllsnRKGSEVILSSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPM 336
Cdd:COG2303 226 --GGR--ATGVEYRD-DGEEHTV----RAAREVILAAGAINSPQLLLLSGIGPASHLREHGIPVVHDLPGVGRNLQDHLE 296
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230 337 NTILVPSKAPIeqSLIQTVGITKMGV-YVEASTGFGQSpeSIHTHYGIMSNKNEL------FSTIPAKQRRPEATQAYIT 409
Cdd:COG2303 297 VSVVFRFKEPV--TLNKSLRKARIGLqYLLTRSGPLTS--NVAEAGGFFRSDPGLerpdlqFHFLPLGLTPRWGKKALHD 372
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230 410 RNKYQLHeafnGSFIleklaYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTSNRFLNYTQCDkq 489
Cdd:COG2303 373 GHGFTAH----VEQL-----RPESRGRVTLDSADPLGAPLIRPNYLSDENDRRVLVAGVRLAREIAAQPALAPYRGEE-- 441
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230 490 nvhkmlslsvkaninLRPKQLNDTKSMAQFCKDTVVTIWHYHGGCLVGK----VVSPNRKVLGVDRLRVIDGSTFDESPG 565
Cdd:COG2303 442 ---------------ILPGPDVQSDEELAFIRARAYTIYHPVGTCRMGTdpdsVVDPRLRVHGVENLRVVDASVMPTITS 506
                       570       580
                ....*....|....*....|...
gi 18410230 566 TNPQATMMMMGrYMGVKILRERL 588
Cdd:COG2303 507 GNTNAPTIMLA-EKAADMILGDY 528
PRK02106 PRK02106
choline dehydrogenase; Validated
60-584 3.59e-39

choline dehydrogenase; Validated


Pssm-ID: 235000 [Multi-domain]  Cd Length: 560  Bit Score: 151.14  E-value: 3.59e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230   60 DSSYDYIVIGGGTAGCPLAATLSQ--NFSVLVLERGGvpfTNANVSFLRNFHIGLAD-ISASSASQAFVST-----DG-- 129
Cdd:PRK02106   3 TMEYDYIIIGAGSAGCVLANRLSEdpDVSVLLLEAGG---PDYRWDFFIQMPAALAFpLQGKRYNWAYETEpephmNNrr 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  130 VYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESY----PWVER-EIVHQP-----------KLTLWQKA--- 190
Cdd:PRK02106  80 MECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYadclPYFKKaETRDGGeddyrggdgplSVTRGKPGtnp 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  191 LRDSLLEVGVRPfnGFTY-DHVSGTKIGG------TIFDrfGRRHTAAEllAYANPQK----LRVLIYATVQKIVFDTsg 259
Cdd:PRK02106 160 LFQAFVEAGVQA--GYPRtDDLNGYQQEGfgpmdrTVTN--GRRWSAAR--AYLDPALkrpnLTIVTHALTDRILFEG-- 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  260 trPRVTGVIFkdEKGNQHQALLSNRkgsEVILSSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPMNTI 339
Cdd:PRK02106 232 --KRAVGVEY--ERGGGRETARARR---EVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYI 304
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  340 LVPSKAPIE-QSLIQTVGITKMGV-YVEASTGFGQSpesihTHY---GIMSNKNEL------FSTIPAKQRR--PEATQA 406
Cdd:PRK02106 305 QYECKQPVSlYPALKWWNKPKIGAeWLFTGTGLGAS-----NHFeagGFIRSRAGVdwpniqYHFLPVAIRYdgSNAVKG 379
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  407 YitrnKYQLHEAFNgsfileklaYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTSNRFLNYTqc 486
Cdd:PRK02106 380 H----GFQAHVGPM---------RSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYR-- 444
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230  487 dKQNVHKMLSLSVKANINlrpkqlndtksmaQFCKDTVVTIWHYHGGCLVGK----VVSPNRKVLGVDRLRVIDGSTFDE 562
Cdd:PRK02106 445 -GREISPGADVQTDEEID-------------AFVREHAETAYHPSCTCKMGTdpmaVVDPEGRVHGVEGLRVVDASIMPT 510
                        570       580
                 ....*....|....*....|..
gi 18410230  563 SPGTNPQATMMMMGRYMGVKIL 584
Cdd:PRK02106 511 ITNGNLNAPTIMIAEKAADLIR 532
GMC_oxred_C pfam05199
GMC oxidoreductase; This domain found associated with pfam00732.
431-576 2.04e-28

GMC oxidoreductase; This domain found associated with pfam00732.


Pssm-ID: 398739 [Multi-domain]  Cd Length: 143  Bit Score: 110.56  E-value: 2.04e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230   431 PISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTSNRFLNYTqcdkqnvhkmlSLSVKANINLRPKQL 510
Cdd:pfam05199   1 PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGV-----------ELTPGPVPEVSDAAV 69
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18410230   511 NDTKSMAQFCKDTVVTIWHYHGGCLVGK-----VVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMG 576
Cdd:pfam05199  70 TSDDELLAYIRAAASTSYHPMGTCRMGAdpddaVVDPDLRVHGVDNLRVVDASVFPSSPSGNPTLTIYALA 140
GMC_oxred_N pfam00732
GMC oxidoreductase; This family of proteins bind FAD as a cofactor.
63-335 4.03e-17

GMC oxidoreductase; This family of proteins bind FAD as a cofactor.


Pssm-ID: 366272 [Multi-domain]  Cd Length: 218  Bit Score: 80.40  E-value: 4.03e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230    63 YDYIVIGGGTAGCplaatlsqnfsvlvlerggvpfTNANVSFLRnfhigladisassasqafvstdgvynaRARVLGGGS 142
Cdd:pfam00732   1 YDYLYEGGGSAGS----------------------VNGRRMILP---------------------------AGSTVGGGS 31
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230   143 CINAGFYSRADAAFVKR-------AGWDPKLVKESYPWVEREI-------VHQPKLTLWQKALRDSLLEVGVRP--FNGF 206
Cdd:pfam00732  32 SVNWSACIRTPAAVLDEwasefglEGWGYDDYLPYMDKVEGPLgvttkgiEESPLNQALLKAAEELGYPVEAVPrnSNGC 111
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18410230   207 TYDHVSGTKIggtifdRFGRRH-TAAELLAYANPQKLRVLIYATVQKIVFDtsGTRPRVTGVIFKDEKGNQHQALLSNRk 285
Cdd:pfam00732 112 HYCGFCGLGC------PTGAKQsTARTWLRPALERNLRILTGAKAEKIIIL--GRGGRAVGVEARDGGGGIKRLITAAK- 182
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 18410230   286 gsEVILSSGAIGSPQMLMLSGIGPKKelqrlkipvvlenEHVGKGMADNP 335
Cdd:pfam00732 183 --EVVVAAGALNTPPLLLRSGLGKNP-------------HPVGKNLQLHP 217
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
62-106 9.77e-04

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 41.81  E-value: 9.77e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 18410230  62 SYDYIVIGGGTAGCPLAATLSQ-NFSVLVLERGGVPF--TNANVSFLR 106
Cdd:COG0665   2 TADVVVIGGGIAGLSTAYHLARrGLDVTVLERGRPGSgaSGRNAGQLR 49
PTZ00367 PTZ00367
squalene epoxidase; Provisional
63-92 1.30e-03

squalene epoxidase; Provisional


Pssm-ID: 240384 [Multi-domain]  Cd Length: 567  Bit Score: 41.76  E-value: 1.30e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 18410230   63 YDYIVIGGGTAGCPLAATLS-QNFSVLVLER 92
Cdd:PTZ00367  34 YDVIIVGGSIAGPVLAKALSkQGRKVLMLER 64
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
63-96 2.61e-03

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 39.99  E-value: 2.61e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 18410230    63 YDYIVIGGGTAGCPLAATLSQ-NFSVLVLERGGVP 96
Cdd:TIGR02032   1 YDVVVVGAGPAGASAAYRLADkGLRVLLLEKKSFP 35
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
62-92 6.43e-03

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 39.36  E-value: 6.43e-03
                        10        20        30
                ....*....|....*....|....*....|...
gi 18410230  62 SYDYIVIGGGTAGCPLAATLSQ--NFSVLVLER 92
Cdd:COG0579   4 MYDVVIIGAGIVGLALARELSRyeDLKVLVLEK 36
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
61-96 7.87e-03

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 39.06  E-value: 7.87e-03
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 18410230  61 SSYDYIVIGGGTAGcpL--AATLSQN-FSVLVLERGGVP 96
Cdd:COG1233   2 MMYDVVVIGAGIGG--LaaAALLARAgYRVTVLEKNDTP 38
PRK06370 PRK06370
FAD-containing oxidoreductase;
62-93 8.41e-03

FAD-containing oxidoreductase;


Pssm-ID: 235787 [Multi-domain]  Cd Length: 463  Bit Score: 39.03  E-value: 8.41e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 18410230   62 SYDYIVIGGGTAGCPLAATLSQ-NFSVLVLERG 93
Cdd:PRK06370   5 RYDAIVIGAGQAGPPLAARAAGlGMKVALIERG 37
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
62-93 9.47e-03

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 38.62  E-value: 9.47e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 18410230   62 SYDYIVIGGGTAGCPLAATLSQN-FSVLVLERG 93
Cdd:PRK06292   3 KYDVIVIGAGPAGYVAARRAAKLgKKVALIEKG 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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