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Conserved domains on  [gi|18409870|ref|NP_565018|]
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Rieske (2Fe-2S) domain-containing protein [Arabidopsis thaliana]

Protein Classification

nitrite reductase (NAD(P)H) small subunit( domain architecture ID 10619160)

NAD(P)H-dependent nitrite reductase small subunit NirD is required for nitrite assimilation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rieske_2 pfam13806
Rieske-like [2Fe-2S] domain;
81-193 2.81e-27

Rieske-like [2Fe-2S] domain;


:

Pssm-ID: 433491 [Multi-domain]  Cd Length: 103  Bit Score: 101.86  E-value: 2.81e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409870    81 WVPVVPLSALPKGERRVVIQDDETILLLWYKND-VFAIENRSPAEGAY--SEGLLNARlTQDGCIVCPSTDSTFDLRTGE 157
Cdd:pfam13806   1 WTPVCALDDLPPGTGVCALVGGRQVAVFRLEDGqVYAIDNRDPFSGANvlSRGIVGDL-GGELVVASPLYKQHFDLKTGE 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 18409870   158 irewypknpvlrVLTPALRKLFVYPVKYDEENIYIS 193
Cdd:pfam13806  80 ------------CLEDPEVSVPVYPVRVRDGNVEVQ 103
 
Name Accession Description Interval E-value
Rieske_2 pfam13806
Rieske-like [2Fe-2S] domain;
81-193 2.81e-27

Rieske-like [2Fe-2S] domain;


Pssm-ID: 433491 [Multi-domain]  Cd Length: 103  Bit Score: 101.86  E-value: 2.81e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409870    81 WVPVVPLSALPKGERRVVIQDDETILLLWYKND-VFAIENRSPAEGAY--SEGLLNARlTQDGCIVCPSTDSTFDLRTGE 157
Cdd:pfam13806   1 WTPVCALDDLPPGTGVCALVGGRQVAVFRLEDGqVYAIDNRDPFSGANvlSRGIVGDL-GGELVVASPLYKQHFDLKTGE 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 18409870   158 irewypknpvlrVLTPALRKLFVYPVKYDEENIYIS 193
Cdd:pfam13806  80 ------------CLEDPEVSVPVYPVRVRDGNVEVQ 103
Rieske cd03467
Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron ...
 81-188 8.01e-21

Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.


Pssm-ID: 239550 [Multi-domain]  Cd Length: 98  Bit Score: 84.85  E-value: 8.01e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409870  81 WVPVVPLSALPKGERRVVIQDDETILLLWYKND-VFAIENRSPAEGayseGLLNARLTQDGCIVCPSTDSTFDLRTGEIR 159
Cdd:cd03467   1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGeVYALSNRCTHQG----CPLSEGEGEDGCIVCPCHGSRFDLRTGEVV 76

                        90       100
                ....*....|....*....|....*....
gi 18409870 160 EWypknpvlrvltPALRKLFVYPVKYDEE 188
Cdd:cd03467  77 SG-----------PAPRPLPKYPVKVEGD 94
NirD COG2146
Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase [Inorganic ion ...
 80-196 1.31e-17

Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase [Inorganic ion transport and metabolism, Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 441749 [Multi-domain]  Cd Length: 103  Bit Score: 76.42  E-value: 1.31e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409870  80 NWVPVVPLSALPKGERRVVIQDDETILLLWYKNDVFAIENRSPAEGAY-SEGLLNarltqDGCIVCPSTDSTFDLRTGEi 158
Cdd:COG2146   2 SEVKVCALDDLPEGGGVVVEVGGKQIAVFRTDGEVYAYDNRCPHQGAPlSEGIVD-----GGVVTCPLHGARFDLRTGE- 75

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 18409870 159 rewyPKNPvlrvltPALRKLFVYPVKYDEENIYISIRD 196
Cdd:COG2146  76 ----CLGG------PATEPLKTYPVRVEDGDVYVDLPE 103
PRK09965 PRK09965
3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
 82-194 2.92e-08

3-phenylpropionate dioxygenase ferredoxin subunit; Provisional


Pssm-ID: 170182 [Multi-domain]  Cd Length: 106  Bit Score: 50.93  E-value: 2.92e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409870   82 VPVVPLSALPKGERRVVIQDdETILLLWYKNDVFAIENR-SPAEGAYSEGLLnarltQDGCIV-CPSTDSTFDLRTGEir 159
Cdd:PRK09965   4 IYACPVADLPEGEALRVDTS-PVIALFNVGGEFYAIDDRcSHGNASLSEGYL-----EDDATVeCPLHAASFCLRTGK-- 75

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 18409870  160 ewyPKNPvlrvltPALRKLFVYPVKYDEENIYISI 194
Cdd:PRK09965  76 ---ALCL------PATDPLRTYPVHVEGGDIFIDL 101
nirD_assim_sml TIGR02378
nitrite reductase [NAD(P)H], small subunit; This model describes NirD, the small subunit of ...
 80-192 1.07e-06

nitrite reductase [NAD(P)H], small subunit; This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused. [Central intermediary metabolism, Nitrogen metabolism]


Pssm-ID: 131431 [Multi-domain]  Cd Length: 105  Bit Score: 46.16  E-value: 1.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409870    80 NWVPVVPLSALP-KGERRVVIQDDETILLLWYKNDVFAIENRSPAEGAY--SEGLLNarlTQDG--CIVCPSTDSTFDLR 154
Cdd:TIGR02378   1 TWQDICAIDDIPeETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFvlSRGIVG---DAQGelWVACPLHKRNFRLE 77

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 18409870   155 TGEIREwypkNPVLRVLTpalrklfvYPVKYDEENIYI 192
Cdd:TIGR02378  78 DGRCLE----DDSGSVRT--------YEVRVEDGRVYV 103
 
Name Accession Description Interval E-value
Rieske_2 pfam13806
Rieske-like [2Fe-2S] domain;
81-193 2.81e-27

Rieske-like [2Fe-2S] domain;


Pssm-ID: 433491 [Multi-domain]  Cd Length: 103  Bit Score: 101.86  E-value: 2.81e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409870    81 WVPVVPLSALPKGERRVVIQDDETILLLWYKND-VFAIENRSPAEGAY--SEGLLNARlTQDGCIVCPSTDSTFDLRTGE 157
Cdd:pfam13806   1 WTPVCALDDLPPGTGVCALVGGRQVAVFRLEDGqVYAIDNRDPFSGANvlSRGIVGDL-GGELVVASPLYKQHFDLKTGE 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 18409870   158 irewypknpvlrVLTPALRKLFVYPVKYDEENIYIS 193
Cdd:pfam13806  80 ------------CLEDPEVSVPVYPVRVRDGNVEVQ 103
Rieske cd03467
Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron ...
 81-188 8.01e-21

Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.


Pssm-ID: 239550 [Multi-domain]  Cd Length: 98  Bit Score: 84.85  E-value: 8.01e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409870  81 WVPVVPLSALPKGERRVVIQDDETILLLWYKND-VFAIENRSPAEGayseGLLNARLTQDGCIVCPSTDSTFDLRTGEIR 159
Cdd:cd03467   1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGeVYALSNRCTHQG----CPLSEGEGEDGCIVCPCHGSRFDLRTGEVV 76

                        90       100
                ....*....|....*....|....*....
gi 18409870 160 EWypknpvlrvltPALRKLFVYPVKYDEE 188
Cdd:cd03467  77 SG-----------PAPRPLPKYPVKVEGD 94
NirD COG2146
Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase [Inorganic ion ...
 80-196 1.31e-17

Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase [Inorganic ion transport and metabolism, Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 441749 [Multi-domain]  Cd Length: 103  Bit Score: 76.42  E-value: 1.31e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409870  80 NWVPVVPLSALPKGERRVVIQDDETILLLWYKNDVFAIENRSPAEGAY-SEGLLNarltqDGCIVCPSTDSTFDLRTGEi 158
Cdd:COG2146   2 SEVKVCALDDLPEGGGVVVEVGGKQIAVFRTDGEVYAYDNRCPHQGAPlSEGIVD-----GGVVTCPLHGARFDLRTGE- 75

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 18409870 159 rewyPKNPvlrvltPALRKLFVYPVKYDEENIYISIRD 196
Cdd:COG2146  76 ----CLGG------PATEPLKTYPVRVEDGDVYVDLPE 103
Rieske_RO_ferredoxin cd03528
Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the ...
 81-193 2.64e-12

Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the insertions that give other Rieske proteins unique structural features are missing. CARDO catalyzes dihydroxylation at the C1 and C9a positions of carbazole. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.


Pssm-ID: 239604 [Multi-domain]  Cd Length: 98  Bit Score: 61.74  E-value: 2.64e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409870  81 WVPVVPLSALPKGERRVVIQDDETILLLWYKNDVFAIENRSPAEGAY-SEGLLnarltQDGCIVCPSTDSTFDLRTGEir 159
Cdd:cd03528   1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRVDGEFYATDDLCTHGDASlSEGYV-----EGGVIECPLHGGRFDLRTGK-- 73

                        90       100       110
                ....*....|....*....|....*....|....
gi 18409870 160 ewyPKNPvlrvltPALRKLFVYPVKYDEENIYIS 193
Cdd:cd03528  74 ---ALSL------PATEPLKTYPVKVEDGDVYVD 98
Rieske pfam00355
Rieske [2Fe-2S] domain; The rieske domain has a [2Fe-2S] centre. Two conserved cysteines ...
 80-182 3.72e-10

Rieske [2Fe-2S] domain; The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilizes the protein.


Pssm-ID: 425632 [Multi-domain]  Cd Length: 89  Bit Score: 55.43  E-value: 3.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409870    80 NWVPVVPLSALPKGERRVVIQDDETILLLWYKN-DVFAIENRSPAEGAYsegLLNARLTQDGCIVCPSTDSTFDlRTGEI 158
Cdd:pfam00355   1 SWYPVCHSSELPEGEPKVVEVGGEPLVVFRDEDgELYALEDRCPHRGAP---LSEGKVNGGGRLECPYHGWRFD-GTGKV 76

                          90       100
                  ....*....|....*....|....
gi 18409870   159 REWypknpvlrvltPALRKLFVYP 182
Cdd:pfam00355  77 VKV-----------PAPRPLKSYP 89
Rieske_NirD_small_Bacillus cd03530
Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar ...
 81-193 1.59e-09

Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.


Pssm-ID: 239606 [Multi-domain]  Cd Length: 98  Bit Score: 54.15  E-value: 1.59e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409870  81 WVPVVPLSALPKGERRVVIQDDETILLLWYKND-VFAIENRSP-AEGAYSEGLLNarltqDGCIVCPSTDSTFDLRTGEI 158
Cdd:cd03530   1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTADDeVFALENRCPhKGGPLSEGIVH-----GEYVTCPLHNWVIDLETGEA 75

                        90       100       110
                ....*....|....*....|....*....|....*
gi 18409870 159 reWYPKNPvlRVLTpalrklfvYPVKYDEENIYIS 193
Cdd:cd03530  76 --QGPDEG--CVRT--------FPVKVEDGRVYLG 98
Rieske_AIFL_N cd03478
AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family ...
 84-191 2.40e-09

AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.


Pssm-ID: 239560 [Multi-domain]  Cd Length: 95  Bit Score: 53.40  E-value: 2.40e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409870  84 VVPLSALPKGERRVVIQDDETILLLWYKNDVFAIENRSPAEGA-YSEGLLNarltqDGCIVCPSTDSTFDLRTGEIREwy 162
Cdd:cd03478   3 VCRLSDLGDGEMKEVDVGDGKVLLVRQGGEVHAIGAKCPHYGApLAKGVLT-----DGRIRCPWHGACFNLRTGDIED-- 75

                        90       100
                ....*....|....*....|....*....
gi 18409870 163 pknpvlrvlTPALRKLFVYPVKYDEENIY 191
Cdd:cd03478  76 ---------APALDSLPCYEVEVEDGRVY 95
PRK09965 PRK09965
3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
 82-194 2.92e-08

3-phenylpropionate dioxygenase ferredoxin subunit; Provisional


Pssm-ID: 170182 [Multi-domain]  Cd Length: 106  Bit Score: 50.93  E-value: 2.92e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409870   82 VPVVPLSALPKGERRVVIQDdETILLLWYKNDVFAIENR-SPAEGAYSEGLLnarltQDGCIV-CPSTDSTFDLRTGEir 159
Cdd:PRK09965   4 IYACPVADLPEGEALRVDTS-PVIALFNVGGEFYAIDDRcSHGNASLSEGYL-----EDDATVeCPLHAASFCLRTGK-- 75

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 18409870  160 ewyPKNPvlrvltPALRKLFVYPVKYDEENIYISI 194
Cdd:PRK09965  76 ---ALCL------PATDPLRTYPVHVEGGDIFIDL 101
nirD_assim_sml TIGR02378
nitrite reductase [NAD(P)H], small subunit; This model describes NirD, the small subunit of ...
 80-192 1.07e-06

nitrite reductase [NAD(P)H], small subunit; This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused. [Central intermediary metabolism, Nitrogen metabolism]


Pssm-ID: 131431 [Multi-domain]  Cd Length: 105  Bit Score: 46.16  E-value: 1.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409870    80 NWVPVVPLSALP-KGERRVVIQDDETILLLWYKNDVFAIENRSPAEGAY--SEGLLNarlTQDG--CIVCPSTDSTFDLR 154
Cdd:TIGR02378   1 TWQDICAIDDIPeETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFvlSRGIVG---DAQGelWVACPLHKRNFRLE 77

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 18409870   155 TGEIREwypkNPVLRVLTpalrklfvYPVKYDEENIYI 192
Cdd:TIGR02378  78 DGRCLE----DDSGSVRT--------YEVRVEDGRVYV 103
Rieske_NirD cd03529
Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite ...
 81-192 1.89e-06

Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.


Pssm-ID: 239605 [Multi-domain]  Cd Length: 103  Bit Score: 45.58  E-value: 1.89e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409870  81 WVPVVPLSALPKGeRRVVIQDDETILLLWY--KNDVFAIENRSPAEGAY--SEGLLNarlTQDG--CIVCPSTDSTFDLR 154
Cdd:cd03529   1 WQTVCALDDLPPG-SGVAALVGDTQIAIFRlpGREVYAVQNMDPHSRANvlSRGIVG---DIGGepVVASPLYKQHFSLK 76

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 18409870 155 TGEIREwypkNPVLRVLTpalrklfvYPVKYDEENIYI 192
Cdd:cd03529  77 TGRCLE----DEDVSVAT--------FPVRVEDGEVYV 102
Rieske_T4moC cd03474
Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske ...
 81-194 1.09e-03

Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.


Pssm-ID: 239556 [Multi-domain]  Cd Length: 108  Bit Score: 37.70  E-value: 1.09e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409870  81 WVPVVPLSALPKGERRVVIQDDETILLLWYKNDVF-AIENRSP-AEGAYSEGLLNARLtqdgcIVCPSTDSTFDLRTGEI 158
Cdd:cd03474   1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFrAFQGICPhQEIPLAEGGFDGGV-----LTCRAHLWQFDADTGEG 75

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 18409870 159 rewypknpvlrvLTPALRKLFVYPVKYDEENIYISI 194
Cdd:cd03474  76 ------------LNPRDCRLARYPVKVEGGDILVDT 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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