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Conserved domains on  [gi|18409119|ref|NP_564942|]
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RNI-like superfamily protein [Arabidopsis thaliana]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 1000136)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00113 super family cl33413
leucine-rich repeat receptor-like protein kinase; Provisional
 108-381 9.61e-34

leucine-rich repeat receptor-like protein kinase; Provisional


The actual alignment was detected with superfamily member PLN00113:

Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 134.21  E-value: 9.61e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  108 IRPQLFELKHLKSLSLfncfttPNRYLASISDEKWLDLsKSLERLEIRSNpGLIGELPSVITNLTNLQSLVVLENKLTGP 187
Cdd:PLN00113 276 IPPSIFSLQKLISLDL------SDNSLSGEIPELVIQL-QNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  188 LPVNLAKLTRLRRLVLSGNRFTGRIPEVYGLTG-LLILDVSRNFLSGALPLSVGGLYSLLKLDLSNNYLEGKLPRELESL 266
Cdd:PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGnLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  267 KNLTLLDLRNNRLSGGLSKEIQEMTSLVELVLSNNRLAGDL-------------------TGI---KWRNLKNLVVLDLS 324
Cdd:PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLpdsfgskrlenldlsrnqfSGAvprKLGSLSELMQLKLS 507

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 18409119  325 NTGLKGEIPGSILELKKLRFLGLSNNNLGGKlIPQMETEMPSLSALYVNGNNISGEL 381
Cdd:PLN00113 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ-IPASFSEMPVLSQLDLSQNQLSGEI 563
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 108-381 9.61e-34

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 134.21  E-value: 9.61e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  108 IRPQLFELKHLKSLSLfncfttPNRYLASISDEKWLDLsKSLERLEIRSNpGLIGELPSVITNLTNLQSLVVLENKLTGP 187
Cdd:PLN00113 276 IPPSIFSLQKLISLDL------SDNSLSGEIPELVIQL-QNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  188 LPVNLAKLTRLRRLVLSGNRFTGRIPEVYGLTG-LLILDVSRNFLSGALPLSVGGLYSLLKLDLSNNYLEGKLPRELESL 266
Cdd:PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGnLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  267 KNLTLLDLRNNRLSGGLSKEIQEMTSLVELVLSNNRLAGDL-------------------TGI---KWRNLKNLVVLDLS 324
Cdd:PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLpdsfgskrlenldlsrnqfSGAvprKLGSLSELMQLKLS 507

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 18409119  325 NTGLKGEIPGSILELKKLRFLGLSNNNLGGKlIPQMETEMPSLSALYVNGNNISGEL 381
Cdd:PLN00113 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ-IPASFSEMPVLSQLDLSQNQLSGEI 563
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
108-352 7.22e-28

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 114.26  E-value: 7.22e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 108 IRPQLFELKHLKSLSLFNCFTTPNRYLASISDEKWLDLSKSLERLEIRSNPGligelpsvITNLTNLQSLVVLENKLTGp 187
Cdd:COG4886  57 LRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEE--------LSNLTNLESLDLSGNQLTD- 127

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 188 LPVNLAKLTRLRRLVLSGNRFTGRIPEVYGLTGLLILDVSRNFLSGaLPLSVGGLYSLLKLDLSNNYLEgKLPRELESLK 267
Cdd:COG4886 128 LPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQIT-DLPEPLGNLT 205

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 268 NLTLLDLRNNRLSgGLSKEIQEMTSLVELVLSNNRLAgDLTGIKwrNLKNLVVLDLSNTGLKgEIPgSILELKKLRFLGL 347
Cdd:COG4886 206 NLEELDLSGNQLT-DLPEPLANLTNLETLDLSNNQLT-DLPELG--NLTNLEELDLSNNQLT-DLP-PLANLTNLKTLDL 279


                ....*
gi 18409119 348 SNNNL 352
Cdd:COG4886 280 SNNQL 284
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 171-377 1.89e-13

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 70.85  E-value: 1.89e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 171 LTNLQSLVVLENKLTGP----LPVNLAKLTRLRRLVLSGNrFTGRIPEVYGL--------TGLLILDVSRNFLSgalPLS 238
Cdd:cd00116  22 LLCLQVLRLEGNTLGEEaakaLASALRPQPSLKELCLSLN-ETGRIPRGLQSllqgltkgCGLQELDLSDNALG---PDG 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 239 VGGLYSLLK------LDLSNNYLE-GKLPRELESLK----NLTLLDLRNNRLSGG----LSKEIQEMTSLVELVLSNNRL 303
Cdd:cd00116  98 CGVLESLLRssslqeLKLNNNGLGdRGLRLLAKGLKdlppALEKLVLGRNRLEGAsceaLAKALRANRDLKELNLANNGI 177

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 304 AGDLTGIKWRNLK---NLVVLDLSNTGLKGE----IPGSILELKKLRFLGLSNNNLGG----KLIPQMETEMPSLSALYV 372
Cdd:cd00116 178 GDAGIRALAEGLKancNLEVLDLNNNGLTDEgasaLAETLASLKSLEVLNLGDNNLTDagaaALASALLSPNISLLTLSL 257


                ....*
gi 18409119 373 NGNNI 377
Cdd:cd00116 258 SCNDI 262
LRR_8 pfam13855
Leucine rich repeat;
219-279 8.93e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 45.98  E-value: 8.93e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18409119   219 TGLLILDVSRNFLSGALPLSVGGLYSLLKLDLSNNYLEGKLPRELESLKNLTLLDLRNNRL 279
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 108-381 9.61e-34

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 134.21  E-value: 9.61e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  108 IRPQLFELKHLKSLSLfncfttPNRYLASISDEKWLDLsKSLERLEIRSNpGLIGELPSVITNLTNLQSLVVLENKLTGP 187
Cdd:PLN00113 276 IPPSIFSLQKLISLDL------SDNSLSGEIPELVIQL-QNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  188 LPVNLAKLTRLRRLVLSGNRFTGRIPEVYGLTG-LLILDVSRNFLSGALPLSVGGLYSLLKLDLSNNYLEGKLPRELESL 266
Cdd:PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGnLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  267 KNLTLLDLRNNRLSGGLSKEIQEMTSLVELVLSNNRLAGDL-------------------TGI---KWRNLKNLVVLDLS 324
Cdd:PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLpdsfgskrlenldlsrnqfSGAvprKLGSLSELMQLKLS 507

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 18409119  325 NTGLKGEIPGSILELKKLRFLGLSNNNLGGKlIPQMETEMPSLSALYVNGNNISGEL 381
Cdd:PLN00113 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ-IPASFSEMPVLSQLDLSQNQLSGEI 563
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 160-386 1.41e-33

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 133.82  E-value: 1.41e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  160 LIGELPSVITNLTNLQSLVVLENKLTGPLPVNLAKLTRLRRLVLSGNRFTGRIP-EVYGLTGLLILDVSRNFLSGALPLS 238
Cdd:PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPpSIFSLQKLISLDLSDNSLSGEIPEL 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  239 VGGLYSLLKLDLSNNYLEGKLPRELESLKNLTLLDLRNNRLSGGLSKEIQEMTSLVELVLSNNRLAGDLTGiKWRNLKNL 318
Cdd:PLN00113 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE-GLCSSGNL 382

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18409119  319 VVLDLSNTGLKGEIPGSILELKKLRFLGLSNNNLGGKLiPQMETEMPSLSALYVNGNNISGELEFSRY 386
Cdd:PLN00113 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL-PSEFTKLPLVYFLDISNNNLQGRINSRKW 449
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 162-381 4.28e-31

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 126.50  E-value: 4.28e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  162 GELPSVITNLTNLQSLVVLENKLTGPLPVNLAKLT-RLRRLVLSGNRFTGRIPEVYgLTGLLILDVSRNFLSGALPLSVG 240
Cdd:PLN00113  83 GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSsSLRYLNLSNNNFTGSIPRGS-IPNLETLDLSNNMLSGEIPNDIG 161

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  241 GLYSLLKLDLSNNYLEGK------------------------LPRELESLKNLTLLDLRNNRLSGGLSKEIQEMTSLVEL 296
Cdd:PLN00113 162 SFSSLKVLDLGGNVLVGKipnsltnltslefltlasnqlvgqIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  297 VLSNNRLA-------GDLTGIKWR----------------NLKNLVVLDLSNTGLKGEIPGSILELKKLRFLGLSNNNLG 353
Cdd:PLN00113 242 DLVYNNLTgpipsslGNLKNLQYLflyqnklsgpippsifSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321

                        250       260
                 ....*....|....*....|....*...
gi 18409119  354 GKlIPQMETEMPSLSALYVNGNNISGEL 381
Cdd:PLN00113 322 GK-IPVALTSLPRLQVLQLWSNKFSGEI 348
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 141-333 6.47e-29

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 119.95  E-value: 6.47e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  141 KWLDLSKSLERLEIRSNpGLIGELPSVITNLTNLQSLVVLENKLTGPLPVNLAKLTRLRRLVLSGNRFTGRIPEVYGLTG 220
Cdd:PLN00113 398 KSLGACRSLRRVRLQDN-SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR 476

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  221 LLILDVSRNFLSGALPLSVGGLYSLLKLDLSNNYLEGKLPRELESLKNLTLLDLRNNRLSGGLSKEIQEMTSLVELVLSN 300
Cdd:PLN00113 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556

                        170       180       190
                 ....*....|....*....|....*....|...
gi 18409119  301 NRLAGDLTGiKWRNLKNLVVLDLSNTGLKGEIP 333
Cdd:PLN00113 557 NQLSGEIPK-NLGNVESLVQVNISHNHLHGSLP 588
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
108-352 7.22e-28

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 114.26  E-value: 7.22e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 108 IRPQLFELKHLKSLSLFNCFTTPNRYLASISDEKWLDLSKSLERLEIRSNPGligelpsvITNLTNLQSLVVLENKLTGp 187
Cdd:COG4886  57 LRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEE--------LSNLTNLESLDLSGNQLTD- 127

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 188 LPVNLAKLTRLRRLVLSGNRFTGRIPEVYGLTGLLILDVSRNFLSGaLPLSVGGLYSLLKLDLSNNYLEgKLPRELESLK 267
Cdd:COG4886 128 LPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQIT-DLPEPLGNLT 205

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 268 NLTLLDLRNNRLSgGLSKEIQEMTSLVELVLSNNRLAgDLTGIKwrNLKNLVVLDLSNTGLKgEIPgSILELKKLRFLGL 347
Cdd:COG4886 206 NLEELDLSGNQLT-DLPEPLANLTNLETLDLSNNQLT-DLPELG--NLTNLEELDLSNNQLT-DLP-PLANLTNLKTLDL 279


                ....*
gi 18409119 348 SNNNL 352
Cdd:COG4886 280 SNNQL 284
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
135-379 1.91e-25

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 107.33  E-value: 1.91e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 135 ASISDEKWLDLSKSLERLEIRSNPGLIGELPSVITNLTNLQSLVVLENKltgplpvNLAKLTRLRRLVLSGNRFTGRIPE 214
Cdd:COG4886  59 DLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQLTDLPEE 131

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 215 VYGLTGLLILDVSRNFLSgALPLSVGGLYSLLKLDLSNNYLEGkLPRELESLKNLTLLDLRNNRLSgGLSKEIQEMTSLV 294
Cdd:COG4886 132 LANLTNLKELDLSNNQLT-DLPEPLGNLTNLKSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTNLE 208

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 295 ELVLSNNRLAgDLtGIKWRNLKNLVVLDLSNTGLKgEIPgSILELKKLRFLGLSNNNLGGklIPQmETEMPSLSALYVNG 374
Cdd:COG4886 209 ELDLSGNQLT-DL-PEPLANLTNLETLDLSNNQLT-DLP-ELGNLTNLEELDLSNNQLTD--LPP-LANLTNLKTLDLSN 281


                ....*
gi 18409119 375 NNISG 379
Cdd:COG4886 282 NQLTD 286
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
96-357 8.23e-25

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 105.40  E-value: 8.23e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  96 KDNSLACSESPVIRPQLFELKHLKSLSLFNcfttpNRYLASISDEKWLDLSKSLerleirsnpglIGELPSVITNLTNLQ 175
Cdd:COG4886  76 LLSLLLLSLLLLGLTDLGDLTNLTELDLSG-----NEELSNLTNLESLDLSGNQ-----------LTDLPEELANLTNLK 139

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 176 SLVVLENKLTgPLPVNLAKLTRLRRLVLSGNRFTGRIPEVYGLTGLLILDVSRNFLSgALPLSVGGLYSLLKLDLSNNYL 255
Cdd:COG4886 140 ELDLSNNQLT-DLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQL 217

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 256 EgKLPRELESLKNLTLLDLRNNRLSGgLSkEIQEMTSLVELVLSNNRLAgDLTGIKwrNLKNLVVLDLSNTGLKGEIPGS 335
Cdd:COG4886 218 T-DLPEPLANLTNLETLDLSNNQLTD-LP-ELGNLTNLEELDLSNNQLT-DLPPLA--NLTNLKTLDLSNNQLTDLKLKE 291

                       250       260
                ....*....|....*....|..
gi 18409119 336 ILELKKLRFLGLSNNNLGGKLI 357
Cdd:COG4886 292 LELLLGLNSLLLLLLLLNLLEL 313
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
110-352 3.21e-19

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 89.22  E-value: 3.21e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 110 PQLFELKHLKSLSLFNCfttpnrYLASISDEkwLDLSKSLERLEIRSNPglIGELPSVITNLTNLQSLVVLENKLTgPLP 189
Cdd:COG4886 130 EELANLTNLKELDLSNN------QLTDLPEP--LGNLTNLKSLDLSNNQ--LTDLPEELGNLTNLKELDLSNNQIT-DLP 198

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 190 VNLAKLTRLRRLVLSGNRFTGRIPEVYGLTGLLILDVSRNFLSgALPlSVGGLYSLLKLDLSNNYLEGkLPrELESLKNL 269
Cdd:COG4886 199 EPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLT-DLP-ELGNLTNLEELDLSNNQLTD-LP-PLANLTNL 274

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 270 TLLDLRNNRLSGGLSKEIQEMTSLVELVLSNNRLAGDLTGIKWRNLKNLVVLDLSNTGLKGEIPGSILELKKLRFLGLSN 349
Cdd:COG4886 275 KTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLL 354


                ...
gi 18409119 350 NNL 352
Cdd:COG4886 355 LLN 357
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
163-378 2.14e-18

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 86.53  E-value: 2.14e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 163 ELPSVITNLTNLQSLVVLENKLTGPLPVNLAKLTRLRRLVLSGNRFTGRIPEVYGLTGLLILDVSRNflsgalpLSVGGL 242
Cdd:COG4886  40 LSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN-------EELSNL 112

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 243 YSLLKLDLSNNYLEgKLPRELESLKNLTLLDLRNNRLSgGLSKEIQEMTSLVELVLSNNRLAGDLTGIKwrNLKNLVVLD 322
Cdd:COG4886 113 TNLESLDLSGNQLT-DLPEELANLTNLKELDLSNNQLT-DLPEPLGNLTNLKSLDLSNNQLTDLPEELG--NLTNLKELD 188

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 18409119 323 LSNTGLKgEIPGSILELKKLRFLGLSNNNLggKLIPQMETEMPSLSALYVNGNNIS 378
Cdd:COG4886 189 LSNNQIT-DLPEPLGNLTNLEELDLSGNQL--TDLPEPLANLTNLETLDLSNNQLT 241
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
149-378 1.46e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 81.13  E-value: 1.46e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 149 LERLEIRSNPGLIGELPSVITNLTNLQSLVVLENKLTGPLPVNLAKLTRLRRLVLSGNRFTGRIPEVYGLTGLLILDVSR 228
Cdd:COG4886   2 LLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLL 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 229 NFLSGALPLSVGGLYSLLKLDLSNNylegklpRELESLKNLTLLDLRNNRLSgGLSKEIQEMTSLVELVLSNNRLAGDLT 308
Cdd:COG4886  82 LSLLLLGLTDLGDLTNLTELDLSGN-------EELSNLTNLESLDLSGNQLT-DLPEELANLTNLKELDLSNNQLTDLPE 153

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 309 GIKwrNLKNLVVLDLSNTGLKgEIPGSILELKKLRFLGLSNNNLggKLIPQMETEMPSLSALYVNGNNIS 378
Cdd:COG4886 154 PLG--NLTNLKSLDLSNNQLT-DLPEELGNLTNLKELDLSNNQI--TDLPEPLGNLTNLEELDLSGNQLT 218
PLN03150 PLN03150
hypothetical protein; Provisional
 157-242 8.32e-15

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 76.39  E-value: 8.32e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  157 NPGLIGELPSVITNLTNLQSLVVLENKLTGPLPVNLAKLTRLRRLVLSGNRFTGRIPEVYG-LTGLLILDVSRNFLSGAL 235
Cdd:PLN03150 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGqLTSLRILNLNGNSLSGRV 506


                 ....*..
gi 18409119  236 PLSVGGL 242
Cdd:PLN03150 507 PAALGGR 513
PLN03150 PLN03150
hypothetical protein; Provisional
 180-263 1.02e-13

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 72.93  E-value: 1.02e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  180 LENK-LTGPLPVNLAKLTRLRRLVLSGNRFTGRIPEVYG-LTGLLILDVSRNFLSGALPLSVGGLYSLLKLDLSNNYLEG 257
Cdd:PLN03150 425 LDNQgLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGsITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504


                 ....*.
gi 18409119  258 KLPREL 263
Cdd:PLN03150 505 RVPAAL 510
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 171-377 1.89e-13

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 70.85  E-value: 1.89e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 171 LTNLQSLVVLENKLTGP----LPVNLAKLTRLRRLVLSGNrFTGRIPEVYGL--------TGLLILDVSRNFLSgalPLS 238
Cdd:cd00116  22 LLCLQVLRLEGNTLGEEaakaLASALRPQPSLKELCLSLN-ETGRIPRGLQSllqgltkgCGLQELDLSDNALG---PDG 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 239 VGGLYSLLK------LDLSNNYLE-GKLPRELESLK----NLTLLDLRNNRLSGG----LSKEIQEMTSLVELVLSNNRL 303
Cdd:cd00116  98 CGVLESLLRssslqeLKLNNNGLGdRGLRLLAKGLKdlppALEKLVLGRNRLEGAsceaLAKALRANRDLKELNLANNGI 177

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 304 AGDLTGIKWRNLK---NLVVLDLSNTGLKGE----IPGSILELKKLRFLGLSNNNLGG----KLIPQMETEMPSLSALYV 372
Cdd:cd00116 178 GDAGIRALAEGLKancNLEVLDLNNNGLTDEgasaLAETLASLKSLEVLNLGDNNLTDagaaALASALLSPNISLLTLSL 257


                ....*
gi 18409119 373 NGNNI 377
Cdd:cd00116 258 SCNDI 262
PLN03150 PLN03150
hypothetical protein; Provisional
 224-334 5.90e-10

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 61.37  E-value: 5.90e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  224 LDVSRNFLSGALPLSVGGLYSLLKLDLSNNYLEGKLPRELESLKNLTLLDLRNNRLSGGLSKEIQEMTSLVELVLSNNRL 303
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

                         90       100       110
                 ....*....|....*....|....*....|..
gi 18409119  304 AGDLTG-IKWRNLKNLVVLDLSNTGLKGeIPG 334
Cdd:PLN03150 503 SGRVPAaLGGRLLHRASFNFTDNAGLCG-IPG 533
PLN03150 PLN03150
hypothetical protein; Provisional
 58-234 1.23e-09

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 60.21  E-value: 1.23e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119   58 WNGsylypDPC--GWTPIQGVTC--DIYDELWYVTALSFgtmkDNSLACSESPVIRPQLfelKHLKSLSLfncfttpnry 133
Cdd:PLN03150 392 WNG-----DPCvpQQHPWSGADCqfDSTKGKWFIDGLGL----DNQGLRGFIPNDISKL---RHLQSINL---------- 449

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  134 lasisdekwldlskslerleirSNPGLIGELPSVITNLTNLQSLVVLENKLTGPLPVNLAKLTRLRRLVLSGNRFTGRIP 213
Cdd:PLN03150 450 ----------------------SGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

                        170       180
                 ....*....|....*....|.
gi 18409119  214 EVYGltGLLILDVSRNFLSGA 234
Cdd:PLN03150 508 AALG--GRLLHRASFNFTDNA 526
PLN03150 PLN03150
hypothetical protein; Provisional
 248-356 6.35e-09

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 57.90  E-value: 6.35e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  248 LDLSNNYLEGKLPRELESLKNLTLLDLRNNRLSGGLSKEIQEMTSLVelvlsnnrlagdltgikwrnlknlvVLDLSNTG 327
Cdd:PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE-------------------------VLDLSYNS 477

                         90       100
                 ....*....|....*....|....*....
gi 18409119  328 LKGEIPGSILELKKLRFLGLSNNNLGGKL 356
Cdd:PLN03150 478 FNGSIPESLGQLTSLRILNLNGNSLSGRV 506
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 240-378 1.24e-08

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 55.18  E-value: 1.24e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 240 GGLYSLLKLDLSNNYLEgKLPrELESLKNLTLLDLRNNRLS--GGLSKeiqeMTSLVELVLSNNRLAGD---------LT 308
Cdd:cd21340  43 EFLTNLTHLYLQNNQIE-KIE-NLENLVNLKKLYLGGNRISvvEGLEN----LTNLEELHIENQRLPPGekltfdprsLA 116

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18409119 309 GIkwrnLKNLVVLDLSNTGLkgEIPGSILELKKLRFLGLSNNNLGG-KLIPQMETEMPSLSALYVNGNNIS 378
Cdd:cd21340 117 AL----SNSLRVLNISGNNI--DSLEPLAPLRNLEQLDASNNQISDlEELLDLLSSWPSLRELDLTGNPVC 181
PLN03150 PLN03150
hypothetical protein; Provisional
 296-404 2.49e-08

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 55.98  E-value: 2.49e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119  296 LVLSNNRLAGDLtGIKWRNLKNLVVLDLSNTGLKGEIPGSILELKKLRFLGLSNNNLGGkLIPQMETEMPSLSALYVNGN 375
Cdd:PLN03150 423 LGLDNQGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQLTSLRILNLNGN 500

                         90       100
                 ....*....|....*....|....*....
gi 18409119  376 NISGELEFSRYFYERMGRRLGVWGNPNLC 404
Cdd:PLN03150 501 SLSGRVPAALGGRLLHRASFNFTDNAGLC 529
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 131-322 4.92e-07

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 50.17  E-value: 4.92e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 131 NRYLASISDekwLDLSKSLERL-----EIRSNPGLigelpsviTNLTNLQSLVVLENKLTgPLPvNLAKLTRLRRLVLSG 205
Cdd:cd21340  11 DKNITKIDN---LSLCKNLKVLylydnKITKIENL--------EFLTNLTHLYLQNNQIE-KIE-NLENLVNLKKLYLGG 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 206 NRFTgRIPEVYGLTGLLILDVSRNFLSGALPL-----SVGGL-YSLLKLDLSNNYLEGklPRELESLKNLTLLDLRNNRL 279
Cdd:cd21340  78 NRIS-VVEGLENLTNLEELHIENQRLPPGEKLtfdprSLAALsNSLRVLNISGNNIDS--LEPLAPLRNLEQLDASNNQI 154

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|
gi 18409119 280 SGG--LSKEIQEMTSLVELVLSNNRLAgdlTGIKWR-----NLKNLVVLD 322
Cdd:cd21340 155 SDLeeLLDLLSSWPSLRELDLTGNPVC---KKPKYRdkiilASKSLEVLD 201
LRR_8 pfam13855
Leucine rich repeat;
219-279 8.93e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 45.98  E-value: 8.93e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18409119   219 TGLLILDVSRNFLSGALPLSVGGLYSLLKLDLSNNYLEGKLPRELESLKNLTLLDLRNNRL 279
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
291-352 7.08e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 43.28  E-value: 7.08e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18409119   291 TSLVELVLSNNRLaGDLTGIKWRNLKNLVVLDLSNTGLKGEIPGSILELKKLRFLGLSNNNL 352
Cdd:pfam13855   1 PNLRSLDLSNNRL-TSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 143-371 5.47e-05

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 45.17  E-value: 5.47e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 143 LDLSKSLERLEIRSNPglIGE-----LPSVITNLTNLQSLVVLENKLTGPLPVNLAKL----TRLRRLVLSGNRFT---- 209
Cdd:COG5238 204 LTQNTTVTTLWLKRNP--IGDegaeiLAEALKGNKSLTTLDLSNNQIGDEGVIALAEAlknnTTVETLYLSGNQIGaega 281

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 210 -GRIPEVYGLTGLLILDVSRNFLS--GALPLSVG--GLYSLLKLDLSNNYLEGK----LPRELESLKNLTLLDLRNNRLS 280
Cdd:COG5238 282 iALAKALQGNTTLTSLDLSVNRIGdeGAIALAEGlqGNKTLHTLNLAYNGIGAQgaiaLAKALQENTTLHSLDLSDNQIG 361

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 281 G----GLSKEIQEMTSLVELVLSNNRLAgdltgikwrNLKNLVVLDLSNTGlkgeipgsilelkKLRFLGLSNNNLGGKL 356
Cdd:COG5238 362 DegaiALAKYLEGNTTLRELNLGKNNIG---------KQGAEALIDALQTN-------------RLHTLILDGNLIGAEA 419

                       250
                ....*....|....*
gi 18409119 357 IPQMETEMPSLSALY 371
Cdd:COG5238 420 QQRLEQLLERIKSVY 434
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 192-382 8.11e-05

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 44.78  E-value: 8.11e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 192 LAKLTRLRRLVLSGNRFTGR-----IPEVYGLTGLLILDVSRNflsgalPLSVGGLYSLLK----------LDLSNNYLE 256
Cdd:COG5238 204 LTQNTTVTTLWLKRNPIGDEgaeilAEALKGNKSLTTLDLSNN------QIGDEGVIALAEalknnttvetLYLSGNQIG 277

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119 257 GK----LPRELESLKNLTLLDLRNNRLSG----GLSKEIQEMTSLVELVLSNNRLAGD----LTGIKWRNlKNLVVLDL- 323
Cdd:COG5238 278 AEgaiaLAKALQGNTTLTSLDLSVNRIGDegaiALAEGLQGNKTLHTLNLAYNGIGAQgaiaLAKALQEN-TTLHSLDLs 356

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18409119 324 ----SNTGLKGeIPGSILELKKLRFLGLSNNNLGGK----LIPQMETEmpSLSALYVNGNNISGELE 382
Cdd:COG5238 357 dnqiGDEGAIA-LAKYLEGNTTLRELNLGKNNIGKQgaeaLIDALQTN--RLHTLILDGNLIGAEAQ 420
LRR_8 pfam13855
Leucine rich repeat;
244-303 9.47e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 40.20  E-value: 9.47e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119   244 SLLKLDLSNNYLEGKLPRELESLKNLTLLDLRNNRLSGGLSKEIQEMTSLVELVLSNNRL 303
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
196-255 2.66e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 38.66  E-value: 2.66e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18409119   196 TRLRRLVLSGNRFTGRIPEV-YGLTGLLILDVSRNFLSGALPLSVGGLYSLLKLDLSNNYL 255
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAfKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 114-349 3.63e-03

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 39.86  E-value: 3.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119   114 ELKHLKSLSLFNcfttpNRYLASISDekwLDLSKSLERLEIRSNPGLIgELPSVITNLTNLQSLVV--LENKLTGPLPVN 191
Cdd:PLN03210  632 SLTGLRNIDLRG-----SKNLKEIPD---LSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMsrCENLEILPTGIN 702

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409119   192 LAKLTRLrrlvlsgnrftgripEVYGLTGLLI-LDVSRNflsgalplsvgglysLLKLDLSNNYLEgKLPRELEsLKNLT 270
Cdd:PLN03210  703 LKSLYRL---------------NLSGCSRLKSfPDISTN---------------ISWLDLDETAIE-EFPSNLR-LENLD 750

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 18409119   271 LLDLRNNRlSGGLSKEIQEMTSLVELvlsnnrLAGDLTGIKWRNLKNLVvldlsntglkgEIPGSILELKKLRFLGLSN 349
Cdd:PLN03210  751 ELILCEMK-SEKLWERVQPLTPLMTM------LSPSLTRLFLSDIPSLV-----------ELPSSIQNLHKLEHLEIEN 811
LRR_8 pfam13855
Leucine rich repeat;
317-377 6.52e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 34.81  E-value: 6.52e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18409119   317 NLVVLDLSNTGLKGEIPGSILELKKLRFLGLSNNNLGGkLIPQMETEMPSLSALYVNGNNI 377
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTT-LSPGAFSGLPSLRYLDLSGNRL 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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