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Conserved domains on  [gi|18401414|ref|NP_564492|]
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uncharacterized protein AT1G44920 [Arabidopsis thaliana]

Protein Classification

DUF3054 domain-containing protein( domain architecture ID 10567952)

uncharacterized DUF3054 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3054 pfam11255
Protein of unknown function (DUF3054); Some members in this family of proteins are annotated ...
 113-224 1.15e-35

Protein of unknown function (DUF3054); Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.


:

Pssm-ID: 431762  Cd Length: 110  Bit Score: 123.16  E-value: 1.15e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401414   113 AGGDVLALLIFSAIGRFSHGFPVFSLDTLHTADPFIAGWFLSAYFLGGYAeEGRGMKGKSKAVVAAAKSWIVGTPLGIII 192
Cdd:pfam11255   1 AVGDVLAVLLFALIGRLSHGEPLTPGGVLETAWPFLVGWLLVAPLLGLYG-PARAWSRPARAWPAGVVVWIVAVPVGLVL 79

                          90       100       110
                  ....*....|....*....|....*....|..
gi 18401414   193 RSASSGHIPaYSFVLVTMGSTAVLLIGWRALL 224
Cdd:pfam11255  80 RALFGGGVP-WSFVLVALVFGAVLLLGWRALA 110
 
Name Accession Description Interval E-value
DUF3054 pfam11255
Protein of unknown function (DUF3054); Some members in this family of proteins are annotated ...
 113-224 1.15e-35

Protein of unknown function (DUF3054); Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.


Pssm-ID: 431762  Cd Length: 110  Bit Score: 123.16  E-value: 1.15e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401414   113 AGGDVLALLIFSAIGRFSHGFPVFSLDTLHTADPFIAGWFLSAYFLGGYAeEGRGMKGKSKAVVAAAKSWIVGTPLGIII 192
Cdd:pfam11255   1 AVGDVLAVLLFALIGRLSHGEPLTPGGVLETAWPFLVGWLLVAPLLGLYG-PARAWSRPARAWPAGVVVWIVAVPVGLVL 79

                          90       100       110
                  ....*....|....*....|....*....|..
gi 18401414   193 RSASSGHIPaYSFVLVTMGSTAVLLIGWRALL 224
Cdd:pfam11255  80 RALFGGGVP-WSFVLVALVFGAVLLLGWRALA 110
 
Name Accession Description Interval E-value
DUF3054 pfam11255
Protein of unknown function (DUF3054); Some members in this family of proteins are annotated ...
 113-224 1.15e-35

Protein of unknown function (DUF3054); Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.


Pssm-ID: 431762  Cd Length: 110  Bit Score: 123.16  E-value: 1.15e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401414   113 AGGDVLALLIFSAIGRFSHGFPVFSLDTLHTADPFIAGWFLSAYFLGGYAeEGRGMKGKSKAVVAAAKSWIVGTPLGIII 192
Cdd:pfam11255   1 AVGDVLAVLLFALIGRLSHGEPLTPGGVLETAWPFLVGWLLVAPLLGLYG-PARAWSRPARAWPAGVVVWIVAVPVGLVL 79

                          90       100       110
                  ....*....|....*....|....*....|..
gi 18401414   193 RSASSGHIPaYSFVLVTMGSTAVLLIGWRALL 224
Cdd:pfam11255  80 RALFGGGVP-WSFVLVALVFGAVLLLGWRALA 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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