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Conserved domains on  [gi|18398872|ref|NP_564425|]
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E3 ubiquitin-protein ligase [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG3216 super family cl42031
Uncharacterized conserved protein, DUF2062 family [Function unknown];
23-150 3.03e-03

Uncharacterized conserved protein, DUF2062 family [Function unknown];


The actual alignment was detected with superfamily member COG3216:

Pssm-ID: 442449  Cd Length: 169  Bit Score: 36.41  E-value: 3.03e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398872  23 ILRRGAEPKQLAFSAALGITMGVFPICGVTVLLCgVAIASL--GSLchaPTVMLANFIATPielsLVVPFL-----RLGE 95
Cdd:COG3216  27 LLRWHLNPRSIARGVAIGVFIGFLPFFGLQMLLA-AALALLlrGNL---PAAVAGTWISNP----LTMPPIyyfayKLGA 98
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 18398872  96 KITGGPHFPLTSDALKKVFTG--QASRDVFLSignALLGWLIAAPFVIVALYIMFLP 150
Cdd:COG3216  99 WLLGTPPLAFALFELSLSWSAllELLLEIGLP---LLLGSLILGLVAALLGYFLVRR 152
 
Name Accession Description Interval E-value
COG3216 COG3216
Uncharacterized conserved protein, DUF2062 family [Function unknown];
23-150 3.03e-03

Uncharacterized conserved protein, DUF2062 family [Function unknown];


Pssm-ID: 442449  Cd Length: 169  Bit Score: 36.41  E-value: 3.03e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398872  23 ILRRGAEPKQLAFSAALGITMGVFPICGVTVLLCgVAIASL--GSLchaPTVMLANFIATPielsLVVPFL-----RLGE 95
Cdd:COG3216  27 LLRWHLNPRSIARGVAIGVFIGFLPFFGLQMLLA-AALALLlrGNL---PAAVAGTWISNP----LTMPPIyyfayKLGA 98
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 18398872  96 KITGGPHFPLTSDALKKVFTG--QASRDVFLSignALLGWLIAAPFVIVALYIMFLP 150
Cdd:COG3216  99 WLLGTPPLAFALFELSLSWSAllELLLEIGLP---LLLGSLILGLVAALLGYFLVRR 152
DUF2062 pfam09835
Uncharacterized protein conserved in bacteria (DUF2062); This domain, found in various ...
20-158 3.83e-03

Uncharacterized protein conserved in bacteria (DUF2062); This domain, found in various prokaryotic proteins, has no known function.


Pssm-ID: 430865  Cd Length: 139  Bit Score: 36.03  E-value: 3.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398872    20 LIQILRRGAEPKQLAFSAALGITMGVFPICGV-TVLLCGVAIASLGSLchaPTVMLANFIATPIelsLVVPFL----RLG 94
Cdd:pfam09835   7 LLRPLRWHLNPRSVARGVAIGLFIGFLPIFGLqMLLAAALALLLRGNL---PAAAAGTWISNPL---TMPPIFylayKLG 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 18398872    95 EKITGGPHFPLTSDALKKVFTGQAsrdvflsiGNALLGWLIAAPFVIVALYIMFLPCFKILVRK 158
Cdd:pfam09835  81 ALLLGRPPQAFTFELAALLLSPIG--------PPLLLGSLILGLIAALLGYFLVLWLWRLYRRR 136
 
Name Accession Description Interval E-value
COG3216 COG3216
Uncharacterized conserved protein, DUF2062 family [Function unknown];
23-150 3.03e-03

Uncharacterized conserved protein, DUF2062 family [Function unknown];


Pssm-ID: 442449  Cd Length: 169  Bit Score: 36.41  E-value: 3.03e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398872  23 ILRRGAEPKQLAFSAALGITMGVFPICGVTVLLCgVAIASL--GSLchaPTVMLANFIATPielsLVVPFL-----RLGE 95
Cdd:COG3216  27 LLRWHLNPRSIARGVAIGVFIGFLPFFGLQMLLA-AALALLlrGNL---PAAVAGTWISNP----LTMPPIyyfayKLGA 98
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 18398872  96 KITGGPHFPLTSDALKKVFTG--QASRDVFLSignALLGWLIAAPFVIVALYIMFLP 150
Cdd:COG3216  99 WLLGTPPLAFALFELSLSWSAllELLLEIGLP---LLLGSLILGLVAALLGYFLVRR 152
DUF2062 pfam09835
Uncharacterized protein conserved in bacteria (DUF2062); This domain, found in various ...
20-158 3.83e-03

Uncharacterized protein conserved in bacteria (DUF2062); This domain, found in various prokaryotic proteins, has no known function.


Pssm-ID: 430865  Cd Length: 139  Bit Score: 36.03  E-value: 3.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398872    20 LIQILRRGAEPKQLAFSAALGITMGVFPICGV-TVLLCGVAIASLGSLchaPTVMLANFIATPIelsLVVPFL----RLG 94
Cdd:pfam09835   7 LLRPLRWHLNPRSVARGVAIGLFIGFLPIFGLqMLLAAALALLLRGNL---PAAAAGTWISNPL---TMPPIFylayKLG 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 18398872    95 EKITGGPHFPLTSDALKKVFTGQAsrdvflsiGNALLGWLIAAPFVIVALYIMFLPCFKILVRK 158
Cdd:pfam09835  81 ALLLGRPPQAFTFELAALLLSPIG--------PPLLLGSLILGLIAALLGYFLVLWLWRLYRRR 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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