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Conserved domains on  [gi|18398763|ref|NP_564419|]
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S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

Protein Classification

class I SAM-dependent methyltransferase( domain architecture ID 12042358)

class I SAM-dependent methyltransferase catalyzes the methylation of one or more specific substrates using S-adenosyl-L-methionine (SAM or AdoMet) as the methyl donor; similar to Arabidopsis thaliana methyltransferase PMTs

CATH:  2.20.25.110
EC:  2.1.1.-
Gene Ontology:  GO:0032259|GO:0008757|GO:0008168|GO:1904047
PubMed:  12504684|12826405
SCOP:  3000118

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Methyltransf_29 pfam03141
Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative ...
 119-631 0e+00

Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase.


:

Pssm-ID: 335237 [Multi-domain]  Cd Length: 506  Bit Score: 850.83  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   119 EYTPCEDRERGRRF--DRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSIEKAIQNWIQV 196
Cdd:pfam03141   1 DYIPCLDNKRAIKFllSRERMEHRERHCPPPEEKLNCLVPPPDGYKTPIPWPKSRDKVWYANVPHTKLAEEKGGQNWVKV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   197 EGERFRFPGGGTMFPRGADAYIDDIARLIPL--TDGAIRTAIDTGCGVASFGAYLLKRDIVAMSFAPRDTHEAQVQFALE 274
Cdd:pfam03141  81 EGDKFTFPGGGTQFPHGADQYIDFIAQMIPDiaWGGRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   275 RGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQNDGLYLTEVDRVLRPGGYWILSGPPINwkkywkgwERSQEDLKQ 354
Cdd:pfam03141 161 RGIPAMLGVLGTKRLPYPSRSFDLAHCSRCRIPWTANDGILLLEVDRVLRPGGYFVLSGPPVY--------ARTEEDLQE 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   355 EQDSIEDAARSLCWKKVTEKGDLSIWQKPINHvECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCVTPLPEAnsSDEFAG 434
Cdd:pfam03141 233 IWKEMEDLTKSLCWKLVAKKGDIAIWQKPLNN-SCYNKREPGKKPPLCKDSDDPDAAWYVPMEACITPLPEV--SHEVGG 309

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   435 GALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQIM-PELSRGRFRNIMDMNAYLGGFAAAMMKYPSW 513
Cdd:pfam03141 310 GWPEPWPARLTAVPPRLSSGQIGGVSPESFKADTELWKKRVNKYKRLLkLGIDWGKVRNVMDMNAGFGGFAAALIDLPVW 389

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   514 VMNVVPVDaEKQTLGVIFERGFIGTYQDWCEGFSTYPRTYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRDT 593
Cdd:pfam03141 390 VMNVVPVD-SPNTLPVIYDRGLIGIYHDWCEAFSTYPRTYDLLHADHLFSLYKKRCNLVDILLEMDRILRPEGFVIIRDS 468

                         490       500       510
                  ....*....|....*....|....*....|....*...
gi 18398763   594 VEMLTKIQSITNGMRWKSRILDHERGPFNPEKILLAVK 631
Cdd:pfam03141 469 VDVLDKVKKIAKAMRWEVRMTDTEDGPHVPEKILIAQK 506
 
Name Accession Description Interval E-value
Methyltransf_29 pfam03141
Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative ...
 119-631 0e+00

Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase.


Pssm-ID: 335237 [Multi-domain]  Cd Length: 506  Bit Score: 850.83  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   119 EYTPCEDRERGRRF--DRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSIEKAIQNWIQV 196
Cdd:pfam03141   1 DYIPCLDNKRAIKFllSRERMEHRERHCPPPEEKLNCLVPPPDGYKTPIPWPKSRDKVWYANVPHTKLAEEKGGQNWVKV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   197 EGERFRFPGGGTMFPRGADAYIDDIARLIPL--TDGAIRTAIDTGCGVASFGAYLLKRDIVAMSFAPRDTHEAQVQFALE 274
Cdd:pfam03141  81 EGDKFTFPGGGTQFPHGADQYIDFIAQMIPDiaWGGRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   275 RGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQNDGLYLTEVDRVLRPGGYWILSGPPINwkkywkgwERSQEDLKQ 354
Cdd:pfam03141 161 RGIPAMLGVLGTKRLPYPSRSFDLAHCSRCRIPWTANDGILLLEVDRVLRPGGYFVLSGPPVY--------ARTEEDLQE 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   355 EQDSIEDAARSLCWKKVTEKGDLSIWQKPINHvECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCVTPLPEAnsSDEFAG 434
Cdd:pfam03141 233 IWKEMEDLTKSLCWKLVAKKGDIAIWQKPLNN-SCYNKREPGKKPPLCKDSDDPDAAWYVPMEACITPLPEV--SHEVGG 309

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   435 GALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQIM-PELSRGRFRNIMDMNAYLGGFAAAMMKYPSW 513
Cdd:pfam03141 310 GWPEPWPARLTAVPPRLSSGQIGGVSPESFKADTELWKKRVNKYKRLLkLGIDWGKVRNVMDMNAGFGGFAAALIDLPVW 389

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   514 VMNVVPVDaEKQTLGVIFERGFIGTYQDWCEGFSTYPRTYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRDT 593
Cdd:pfam03141 390 VMNVVPVD-SPNTLPVIYDRGLIGIYHDWCEAFSTYPRTYDLLHADHLFSLYKKRCNLVDILLEMDRILRPEGFVIIRDS 468

                         490       500       510
                  ....*....|....*....|....*....|....*...
gi 18398763   594 VEMLTKIQSITNGMRWKSRILDHERGPFNPEKILLAVK 631
Cdd:pfam03141 469 VDVLDKVKKIAKAMRWEVRMTDTEDGPHVPEKILIAQK 506
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
 210-332 4.74e-10

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 58.08  E-value: 4.74e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763 210 FPRGADAY--IDDIARLIPLTDGAirTAIDTGCGVASFGAYLLKRD--IVAMsfaprDTHEAQVQFALERGVPAIIGI-- 283
Cdd:COG2226   1 FDRVAARYdgREALLAALGLRPGA--RVLDLGCGTGRLALALAERGarVTGV-----DISPEMLELARERAAEAGLNVef 73

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 18398763 284 --MGSRRLPYPARAFDLAHCSRCLiPWFQNDGLYLTEVDRVLRPGGYWILS 332
Cdd:COG2226  74 vvGDAEDLPFPDGSFDLVISSFVL-HHLPDPERALAEIARVLKPGGRLVVV 123
 
Name Accession Description Interval E-value
Methyltransf_29 pfam03141
Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative ...
 119-631 0e+00

Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase.


Pssm-ID: 335237 [Multi-domain]  Cd Length: 506  Bit Score: 850.83  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   119 EYTPCEDRERGRRF--DRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSIEKAIQNWIQV 196
Cdd:pfam03141   1 DYIPCLDNKRAIKFllSRERMEHRERHCPPPEEKLNCLVPPPDGYKTPIPWPKSRDKVWYANVPHTKLAEEKGGQNWVKV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   197 EGERFRFPGGGTMFPRGADAYIDDIARLIPL--TDGAIRTAIDTGCGVASFGAYLLKRDIVAMSFAPRDTHEAQVQFALE 274
Cdd:pfam03141  81 EGDKFTFPGGGTQFPHGADQYIDFIAQMIPDiaWGGRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   275 RGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQNDGLYLTEVDRVLRPGGYWILSGPPINwkkywkgwERSQEDLKQ 354
Cdd:pfam03141 161 RGIPAMLGVLGTKRLPYPSRSFDLAHCSRCRIPWTANDGILLLEVDRVLRPGGYFVLSGPPVY--------ARTEEDLQE 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   355 EQDSIEDAARSLCWKKVTEKGDLSIWQKPINHvECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCVTPLPEAnsSDEFAG 434
Cdd:pfam03141 233 IWKEMEDLTKSLCWKLVAKKGDIAIWQKPLNN-SCYNKREPGKKPPLCKDSDDPDAAWYVPMEACITPLPEV--SHEVGG 309

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   435 GALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQIM-PELSRGRFRNIMDMNAYLGGFAAAMMKYPSW 513
Cdd:pfam03141 310 GWPEPWPARLTAVPPRLSSGQIGGVSPESFKADTELWKKRVNKYKRLLkLGIDWGKVRNVMDMNAGFGGFAAALIDLPVW 389

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   514 VMNVVPVDaEKQTLGVIFERGFIGTYQDWCEGFSTYPRTYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRDT 593
Cdd:pfam03141 390 VMNVVPVD-SPNTLPVIYDRGLIGIYHDWCEAFSTYPRTYDLLHADHLFSLYKKRCNLVDILLEMDRILRPEGFVIIRDS 468

                         490       500       510
                  ....*....|....*....|....*....|....*...
gi 18398763   594 VEMLTKIQSITNGMRWKSRILDHERGPFNPEKILLAVK 631
Cdd:pfam03141 469 VDVLDKVKKIAKAMRWEVRMTDTEDGPHVPEKILIAQK 506
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
 210-332 4.74e-10

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 58.08  E-value: 4.74e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763 210 FPRGADAY--IDDIARLIPLTDGAirTAIDTGCGVASFGAYLLKRD--IVAMsfaprDTHEAQVQFALERGVPAIIGI-- 283
Cdd:COG2226   1 FDRVAARYdgREALLAALGLRPGA--RVLDLGCGTGRLALALAERGarVTGV-----DISPEMLELARERAAEAGLNVef 73

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 18398763 284 --MGSRRLPYPARAFDLAHCSRCLiPWFQNDGLYLTEVDRVLRPGGYWILS 332
Cdd:COG2226  74 vvGDAEDLPFPDGSFDLVISSFVL-HHLPDPERALAEIARVLKPGGRLVVV 123
UbiG COG2227
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ...
 211-334 1.59e-08

2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 441829 [Multi-domain]  Cd Length: 126  Bit Score: 53.48  E-value: 1.59e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763 211 PRGADAYIDDIARLIPLTDGAIRTAIDTGCGVASFGAYLLKR--DIVAMSFAPRDTHEAQvQFALERGVPAIIGIMgsRR 288
Cdd:COG2227   4 PDARDFWDRRLAALLARLLPAGGRVLDVGCGTGRLALALARRgaDVTGVDISPEALEIAR-ERAAELNVDFVQGDL--ED 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 18398763 289 LPYPARAFDLAHCSRCLIpWFQNDGLYLTEVDRVLRPGGYWILSGP 334
Cdd:COG2227  81 LPLEDGSFDLVICSEVLE-HLPDPAALLRELARLLKPGGLLLLSTP 125
Methyltransf_11 pfam08241
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
 236-328 2.30e-08

Methyltransferase domain; Members of this family are SAM dependent methyltransferases.


Pssm-ID: 462406 [Multi-domain]  Cd Length: 94  Bit Score: 51.90  E-value: 2.30e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   236 IDTGCGVASFGAYLLKR--DIVAMsfaprDTHEAQVQFALERGVPAIIG-IMGS-RRLPYPARAFDLAHCSRCLiPWFQN 311
Cdd:pfam08241   1 LDVGCGTGLLTELLARLgaRVTGV-----DISPEMLELAREKAPREGLTfVVGDaEDLPFPDNSFDLVLSSEVL-HHVED 74

                          90
                  ....*....|....*..
gi 18398763   312 DGLYLTEVDRVLRPGGY 328
Cdd:pfam08241  75 PERALREIARVLKPGGI 91
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
 239-327 1.20e-06

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 47.17  E-value: 1.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763   239 GCGVASFGAYLLKR---DIVAMsfaprDTHEAQVQFALERGVPAIIGI----MGSRRLPYPARAFDLAHCSRCLIpWFQN 311
Cdd:pfam13649   5 GCGTGRLTLALARRggaRVTGV-----DLSPEMLERARERAAEAGLNVefvqGDAEDLPFPDGSFDLVVSSGVLH-HLPD 78

                          90
                  ....*....|....*...
gi 18398763   312 DGL--YLTEVDRVLRPGG 327
Cdd:pfam13649  79 PDLeaALREIARVLKPGG 96
Cfa COG2230
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport ...
 203-334 3.29e-04

Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism];


Pssm-ID: 441831 [Multi-domain]  Cd Length: 158  Bit Score: 41.45  E-value: 3.29e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763 203 FPGGGTMFPRGADAYIDDIARLIPLTDGAirTAIDTGCGVASFGAYLLKR---DIVAMsfaprDTHEAQVQFALER---- 275
Cdd:COG2230  25 FEDPDDTLEEAQEAKLDLILRKLGLKPGM--RVLDIGCGWGGLALYLARRygvRVTGV-----TLSPEQLEYARERaaea 97

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18398763 276 GVPAIIGI--MGSRRLPYPARaFDLAHCSRCLIpWFQNDGL--YLTEVDRVLRPGGYWILSGP 334
Cdd:COG2230  98 GLADRVEVrlADYRDLPADGQ-FDAIVSIGMFE-HVGPENYpaYFAKVARLLKPGGRLLLHTP 158
Tam COG4106
Trans-aconitate methyltransferase [Energy production and conversion];
233-332 1.72e-03

Trans-aconitate methyltransferase [Energy production and conversion];


Pssm-ID: 443282 [Multi-domain]  Cd Length: 100  Bit Score: 38.27  E-value: 1.72e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763 233 RTAIDTGCGVASFGAYLLKR----DIVAMsfaprDTHEAQVQFALER--GVPAIIGIMgsRRLPyPARAFDLAHCSRCLi 306
Cdd:COG4106   3 RRVLDLGCGTGRLTALLAERfpgaRVTGV-----DLSPEMLARARARlpNVRFVVADL--RDLD-PPEPFDLVVSNAAL- 73

                        90       100
                ....*....|....*....|....*.
gi 18398763 307 PWFQNDGLYLTEVDRVLRPGGYWILS 332
Cdd:COG4106  74 HWLPDHAALLARLAAALAPGGVLAVQ 99
COG4976 COG4976
Predicted methyltransferase, contains TPR repeat [General function prediction only];
212-332 3.85e-03

Predicted methyltransferase, contains TPR repeat [General function prediction only];


Pssm-ID: 444001 [Multi-domain]  Cd Length: 181  Bit Score: 38.83  E-value: 3.85e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763 212 RGADAYIDDIARLIPltDGAIRTAIDTGCGVASFGAYLLKR--DIVAMsfaprDTHEAQVQFALERGVPAIIGIMGSRRL 289
Cdd:COG4976  29 EAPALLAEELLARLP--PGPFGRVLDLGCGTGLLGEALRPRgyRLTGV-----DLSEEMLAKAREKGVYDRLLVADLADL 101

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 18398763 290 PYPARAFDLAHCS------RCLIPWFQNdglylteVDRVLRPGGYWILS 332
Cdd:COG4976 102 AEPDGRFDLIVAAdvltylGDLAAVFAG-------VARALKPGGLFIFS 143
SmtA COG0500
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ...
 210-338 7.12e-03

SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 440266 [Multi-domain]  Cd Length: 199  Bit Score: 38.36  E-value: 7.12e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18398763 210 FPRGADAYIDDIARLIPLTDGAIRtAIDTGCGVASFGAYLLKR---DIVAMSFAPRDTHEAQvQFALERGVPAIIGIMGS 286
Cdd:COG0500   6 YSDELLPGLAALLALLERLPKGGR-VLDLGCGTGRNLLALAARfggRVIGIDLSPEAIALAR-ARAAKAGLGNVEFLVAD 83

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 18398763 287 --RRLPYPARAFDLAhCSRCLIPWFQNDGL--YLTEVDRVLRPGGYWILSGPPINW 338
Cdd:COG0500  84 laELDPLPAESFDLV-VAFGVLHHLPPEEReaLLRELARALKPGGVLLLSASDAAA 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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