Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]
SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)
SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
PLN03091 super family | cl33633 | hypothetical protein; Provisional |
28-223 | 1.54e-17 | ||||
hypothetical protein; Provisional The actual alignment was detected with superfamily member PLN03091: Pssm-ID: 215570 [Multi-domain] Cd Length: 459 Bit Score: 84.26 E-value: 1.54e-17
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Name | Accession | Description | Interval | E-value | ||||
PLN03091 | PLN03091 | hypothetical protein; Provisional |
28-223 | 1.54e-17 | ||||
hypothetical protein; Provisional Pssm-ID: 215570 [Multi-domain] Cd Length: 459 Bit Score: 84.26 E-value: 1.54e-17
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REB1 | COG5147 | Myb superfamily proteins, including transcription factors and mRNA splicing factors ... |
19-157 | 2.08e-16 | ||||
Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]; Pssm-ID: 227476 [Multi-domain] Cd Length: 512 Bit Score: 80.99 E-value: 2.08e-16
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Myb_DNA-bind_6 | pfam13921 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
28-88 | 4.28e-13 | ||||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 372817 [Multi-domain] Cd Length: 60 Bit Score: 63.87 E-value: 4.28e-13
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SANT | cd00167 | 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
27-71 | 2.06e-11 | ||||
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Pssm-ID: 238096 [Multi-domain] Cd Length: 45 Bit Score: 58.36 E-value: 2.06e-11
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SANT | smart00717 | SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
27-73 | 5.68e-11 | ||||
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 57.23 E-value: 5.68e-11
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Name | Accession | Description | Interval | E-value | ||||
PLN03091 | PLN03091 | hypothetical protein; Provisional |
28-223 | 1.54e-17 | ||||
hypothetical protein; Provisional Pssm-ID: 215570 [Multi-domain] Cd Length: 459 Bit Score: 84.26 E-value: 1.54e-17
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REB1 | COG5147 | Myb superfamily proteins, including transcription factors and mRNA splicing factors ... |
19-157 | 2.08e-16 | ||||
Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]; Pssm-ID: 227476 [Multi-domain] Cd Length: 512 Bit Score: 80.99 E-value: 2.08e-16
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PLN03212 | PLN03212 | Transcription repressor MYB5; Provisional |
28-186 | 1.34e-14 | ||||
Transcription repressor MYB5; Provisional Pssm-ID: 178751 [Multi-domain] Cd Length: 249 Bit Score: 73.19 E-value: 1.34e-14
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Myb_DNA-bind_6 | pfam13921 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
28-88 | 4.28e-13 | ||||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 372817 [Multi-domain] Cd Length: 60 Bit Score: 63.87 E-value: 4.28e-13
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Myb_DNA-binding | pfam00249 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
77-121 | 5.05e-12 | ||||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 60.21 E-value: 5.05e-12
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SANT | cd00167 | 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
27-71 | 2.06e-11 | ||||
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Pssm-ID: 238096 [Multi-domain] Cd Length: 45 Bit Score: 58.36 E-value: 2.06e-11
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SANT | smart00717 | SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
27-73 | 5.68e-11 | ||||
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 57.23 E-value: 5.68e-11
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SANT | cd00167 | 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
80-121 | 4.06e-10 | ||||
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Pssm-ID: 238096 [Multi-domain] Cd Length: 45 Bit Score: 54.89 E-value: 4.06e-10
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Myb_DNA-binding | pfam00249 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
28-71 | 5.16e-10 | ||||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 54.43 E-value: 5.16e-10
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SANT | smart00717 | SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
77-124 | 1.23e-09 | ||||
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 53.77 E-value: 1.23e-09
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Myb_DNA-bind_6 | pfam13921 | Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
80-133 | 7.92e-06 | ||||
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Pssm-ID: 372817 [Multi-domain] Cd Length: 60 Bit Score: 43.07 E-value: 7.92e-06
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SANT_TRF | cd11660 | Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ... |
28-69 | 5.72e-05 | ||||
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Pssm-ID: 212558 [Multi-domain] Cd Length: 50 Bit Score: 40.24 E-value: 5.72e-05
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SANT_TRF | cd11660 | Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ... |
80-123 | 9.74e-04 | ||||
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Pssm-ID: 212558 [Multi-domain] Cd Length: 50 Bit Score: 36.78 E-value: 9.74e-04
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Blast search parameters | ||||
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