NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|18394104|ref|NP_563947|]
View 

NAD(P)-linked oxidoreductase superfamily protein [Arabidopsis thaliana]

Protein Classification

PH domain-containing protein( domain architecture ID 10508669)

bacterial Pleckstrin homology (bPH) domain-containing protein may be involved in protein-protein interactions

CATH:  2.30.29.50
Gene Ontology:  GO:0005515
PubMed:  15493994|22728242|19913036
SCOP:  3000134

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
bPH_2 pfam03703
Bacterial PH domain; Domain found in uncharacterized family of membrane proteins. 1-3 copies ...
 107-178 4.47e-11

Bacterial PH domain; Domain found in uncharacterized family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices. Members of this family have a PH domain like structure.


:

Pssm-ID: 427450 [Multi-domain]  Cd Length: 78  Bit Score: 56.45  E-value: 4.47e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18394104   107 FNLRYRFTNLRVTVISGLTGDDRSDFSYKVIKDVQVV----PRFIGeWGDIIITLKDGTKVDL--RSVPKFREIAKYC 178
Cdd:pfam03703   2 RATGYTITDRRVVVRSGILGRKRVDIPLERIQDVSLSqsplQRRLG-LGTIVIDTAGGSGVRLplRDVPDAEELREWL 78
 
Name Accession Description Interval E-value
bPH_2 pfam03703
Bacterial PH domain; Domain found in uncharacterized family of membrane proteins. 1-3 copies ...
 107-178 4.47e-11

Bacterial PH domain; Domain found in uncharacterized family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices. Members of this family have a PH domain like structure.


Pssm-ID: 427450 [Multi-domain]  Cd Length: 78  Bit Score: 56.45  E-value: 4.47e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18394104   107 FNLRYRFTNLRVTVISGLTGDDRSDFSYKVIKDVQVV----PRFIGeWGDIIITLKDGTKVDL--RSVPKFREIAKYC 178
Cdd:pfam03703   2 RATGYTITDRRVVVRSGILGRKRVDIPLERIQDVSLSqsplQRRLG-LGTIVIDTAGGSGVRLplRDVPDAEELREWL 78
 
Name Accession Description Interval E-value
bPH_2 pfam03703
Bacterial PH domain; Domain found in uncharacterized family of membrane proteins. 1-3 copies ...
 107-178 4.47e-11

Bacterial PH domain; Domain found in uncharacterized family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices. Members of this family have a PH domain like structure.


Pssm-ID: 427450 [Multi-domain]  Cd Length: 78  Bit Score: 56.45  E-value: 4.47e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18394104   107 FNLRYRFTNLRVTVISGLTGDDRSDFSYKVIKDVQVV----PRFIGeWGDIIITLKDGTKVDL--RSVPKFREIAKYC 178
Cdd:pfam03703   2 RATGYTITDRRVVVRSGILGRKRVDIPLERIQDVSLSqsplQRRLG-LGTIVIDTAGGSGVRLplRDVPDAEELREWL 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH