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Conserved domains on  [gi|18390706|ref|NP_563773|]
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6,7-dimethyl-8-ribityllumazine synthase [Arabidopsis thaliana]

Protein Classification

PADRE domain-containing protein( domain architecture ID 10623740)

pathogen and abiotic stress response, cadmium tolerance, disordered region-containing (PADRE) domain-containing protein similar to Arabidopsis thaliana protein At1g66480

PubMed:  32547597

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PADRE pfam14009
PADRE domain; This entry represents the Pathogen and abiotic stress response, cadmium ...
 1-166 2.68e-36

PADRE domain; This entry represents the Pathogen and abiotic stress response, cadmium tolerance, disordered region-containing (PADRE) domain, which is specifically found in plants. PADRE typically occurs in small single-domain proteins with a bipartite architecture. PADRE contains conserved sequence motifs at the N-terminal, and its C-terminal includes an intrinsically disordered region with multiple phosphorylation sites. This domain is associated with plant defense upon diverse stress stimulus and has a role in disease resistance to fungi.


:

Pssm-ID: 464065  Cd Length: 146  Bit Score: 122.94  E-value: 2.68e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390706     1 MGNslrcCLACVLPCGAL-DLIRIVHLNGYVEEITRSITAGEILQANPNHVLSKPCSQGVVRKILILSPESELKRGSIYF 79
Cdd:pfam14009   1 MGN----CVSCCLLAGAAaKVVKVVHPDGEVRELYRPVTAAEVMLENPGHFVCDADSLFIGRRIPPLPPDEELLPGQIYF 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390706    80 LipdssLPEKKRRRKDTPRRKKNLQNPSADAAGREIKGDEECVKLCEKylEEVVSSASTGKEHRHrrrhsrsasvSTWRP 159
Cdd:pfam14009  77 L-----LPADRLQSVLTAEDLAALALKASSALSRSRSRSSVAAGQSPF--EYVKGGKSRGRARVR----------VLWRP 139


                  ....*..
gi 18390706   160 LLDSISE 166
Cdd:pfam14009 140 ALETISE 146
 
Name Accession Description Interval E-value
PADRE pfam14009
PADRE domain; This entry represents the Pathogen and abiotic stress response, cadmium ...
 1-166 2.68e-36

PADRE domain; This entry represents the Pathogen and abiotic stress response, cadmium tolerance, disordered region-containing (PADRE) domain, which is specifically found in plants. PADRE typically occurs in small single-domain proteins with a bipartite architecture. PADRE contains conserved sequence motifs at the N-terminal, and its C-terminal includes an intrinsically disordered region with multiple phosphorylation sites. This domain is associated with plant defense upon diverse stress stimulus and has a role in disease resistance to fungi.


Pssm-ID: 464065  Cd Length: 146  Bit Score: 122.94  E-value: 2.68e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390706     1 MGNslrcCLACVLPCGAL-DLIRIVHLNGYVEEITRSITAGEILQANPNHVLSKPCSQGVVRKILILSPESELKRGSIYF 79
Cdd:pfam14009   1 MGN----CVSCCLLAGAAaKVVKVVHPDGEVRELYRPVTAAEVMLENPGHFVCDADSLFIGRRIPPLPPDEELLPGQIYF 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390706    80 LipdssLPEKKRRRKDTPRRKKNLQNPSADAAGREIKGDEECVKLCEKylEEVVSSASTGKEHRHrrrhsrsasvSTWRP 159
Cdd:pfam14009  77 L-----LPADRLQSVLTAEDLAALALKASSALSRSRSRSSVAAGQSPF--EYVKGGKSRGRARVR----------VLWRP 139


                  ....*..
gi 18390706   160 LLDSISE 166
Cdd:pfam14009 140 ALETISE 146
 
Name Accession Description Interval E-value
PADRE pfam14009
PADRE domain; This entry represents the Pathogen and abiotic stress response, cadmium ...
 1-166 2.68e-36

PADRE domain; This entry represents the Pathogen and abiotic stress response, cadmium tolerance, disordered region-containing (PADRE) domain, which is specifically found in plants. PADRE typically occurs in small single-domain proteins with a bipartite architecture. PADRE contains conserved sequence motifs at the N-terminal, and its C-terminal includes an intrinsically disordered region with multiple phosphorylation sites. This domain is associated with plant defense upon diverse stress stimulus and has a role in disease resistance to fungi.


Pssm-ID: 464065  Cd Length: 146  Bit Score: 122.94  E-value: 2.68e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390706     1 MGNslrcCLACVLPCGAL-DLIRIVHLNGYVEEITRSITAGEILQANPNHVLSKPCSQGVVRKILILSPESELKRGSIYF 79
Cdd:pfam14009   1 MGN----CVSCCLLAGAAaKVVKVVHPDGEVRELYRPVTAAEVMLENPGHFVCDADSLFIGRRIPPLPPDEELLPGQIYF 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390706    80 LipdssLPEKKRRRKDTPRRKKNLQNPSADAAGREIKGDEECVKLCEKylEEVVSSASTGKEHRHrrrhsrsasvSTWRP 159
Cdd:pfam14009  77 L-----LPADRLQSVLTAEDLAALALKASSALSRSRSRSSVAAGQSPF--EYVKGGKSRGRARVR----------VLWRP 139


                  ....*..
gi 18390706   160 LLDSISE 166
Cdd:pfam14009 140 ALETISE 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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