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Conserved domains on  [gi|18390446|ref|NP_563719|]
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ubiquitin-specific protease 2 [Arabidopsis thaliana]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 13671465)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
703-955 1.33e-50

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member cd02667:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 279  Bit Score: 179.89  E-value: 1.33e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 703 DDSDLPVSVERCLGHFTKHEILSDDNAWNCENCSKnlklqrlrekrksnedesrssntsngwvkenedegfgeteilavk 782
Cdd:cd02667 105 DEIKSECSIESCLKQFTEVEILEGNNKFACENCTK--------------------------------------------- 139
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 783 qdpndtscvkdhssdgrkaarihsadeseskgtqdededsekvitvkrdATKKVLINKAPPVLTIHLKRFSQDLRGRLSK 862
Cdd:cd02667 140 -------------------------------------------------AKKQYLISKLPPVLVIHLKRFQQPRSANLRK 170
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 863 LNGHVAFKEVIDLRQYMDSRC---SGEDPPVYRLAGLVEHSGTMRGGHYVAYVR-------GGQRVKETDSSSTA----- 927
Cdd:cd02667 171 VSRHVSFPEILDLAPFCDPKCnssEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKvrppqqrLSDLTKSKPAADEAgpgsg 250
                       250       260
                ....*....|....*....|....*....
gi 18390446 928 -WYNVSDAYVRQVSLEKVLHSEAYILFYE 955
Cdd:cd02667 251 qWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
232-383 1.88e-42

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member cd02667:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 279  Bit Score: 156.39  E-value: 1.88e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKengsgvggplasslrklftetkpeaglksviNPRAFFGSFCSKAPQFRGY 311
Cdd:cd02667   1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------TPKELFSQVCRKAPQFKGY 49
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18390446 312 DQHDSHELLRCLLDSLSteesalrkkrgvsdndekstTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02667  50 QQQDSHELLRYLLDGLR--------------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSL 101
UBP12 super family cl35019
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
232-956 3.73e-21

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5560:

Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 99.57  E-value: 3.73e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFL---------KENGSGVGGPLASS----LRKLFTetkpeaGLKSVINPRAFF 298
Cdd:COG5560 267 GLRNLGNTCYMNSALQCLMHTWELRDYFLsdeyeesinEENPLGMHGSVASAyadlIKQLYD------GNLHAFTPSGFK 340
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 299 GSFCSKAPQFRGYDQHDSHELLRCLLDSLSTEESALRKKR-----GVSDNDE----------------KSTTLIESVFGG 357
Cdd:COG5560 341 KTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPytskpDLSPGDDvvvkkkakecwwehlkRNDSIITDLFQG 420
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 358 ETSSIVSCMECGHSSKVYEPFLDLSLpvpfkksppkkpqpvsrakkaKLPPKRVPKNVskvskvskvlpgMVLSELNSSG 437
Cdd:COG5560 421 MYKSTLTCPGCGSVSITFDPFMDLTL---------------------PLPVSMVWKHT------------IVVFPESGRR 467
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 438 KSMAVTADSDTSCSSL-----APLDNGPVLETPSVLTLDNNQASESASQSDTgfdgsWLDFIGPEtsgdetnldmqedgi 512
Cdd:COG5560 468 QPLKIELDASSTIRGLkklvdAEYGKLGCFEIKVMCIYYGGNYNMLEPADKV-----LLQDIPQT--------------- 527
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 513 DNVITAEVNQ---IVPSPNIVANSSVSS----GDQTLEGNTERLMQDYEEIAKAEANLDEKdVQAMQSDECPATSGIsae 585
Cdd:COG5560 528 DFVYLYETNDngiEVPVVHLRIEKGYKSkrlfGDPFLQLNVLIKASIYDKLVKEFEELLVL-VEMKKTDVDLVSEQV--- 603
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 586 fsqascigcdpGIGESSSSVNPWDEEELPLVVADSQILymPYKEISCNDKSVEGECEasssfvtgdHEPQNSDFvdfggL 665
Cdd:COG5560 604 -----------RLLREESSPSSWLKLETEIDTKREEQV--EEEGQMNFNDAVVISCE---------WEEKRYLS-----L 656
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 666 FDEPETtegpvfGPPSKAEasgvgfmaFSSESdpeeiddsdlpVSVERCLGHFTKHEILSDDNAWNCENCsknlklqrlr 745
Cdd:COG5560 657 FSYDPL------WTIREIG--------AAERT-----------ITLQDCLNEFSKPEQLGLSDSWYCPGC---------- 701
                       570       580       590       600       610       620       630       640
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 746 ekrksnedesrssntsngwvKEnedegfgeteilavkqdpndtscvkdhssdgrkaarihsadeseskgtqdededsekv 825
Cdd:COG5560 702 --------------------KE---------------------------------------------------------- 703
                       650       660       670       680       690       700       710       720
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 826 itvKRDATKKVLINKAPPVLTIHLKRFSQDLRGRLsKLNGHVAFK-EVIDLRQYMDSRcsgEDPPV-YRLAGLVEHSGTM 903
Cdd:COG5560 704 ---FRQASKQMELWRLPMILIIHLKRFSSVRSFRD-KIDDLVEYPiDDLDLSGVEYMV---DDPRLiYDLYAVDNHYGGL 776
                       730       740       750       760       770
                ....*....|....*....|....*....|....*....|....*....|...
gi 18390446 904 RGGHYVAYVRggqrvketDSSSTAWYNVSDAYVRQVSLEKVLHSEAYILFYER 956
Cdd:COG5560 777 SGGHYTAYAR--------NFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
105-161 3.94e-09

Zn-finger in ubiquitin-hydrolases and other protein;


:

Pssm-ID: 460464  Cd Length: 63  Bit Score: 53.42  E-value: 3.94e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18390446   105 SNNKAIWLCLECGCYVCGgvglpNGPQSHVLRHSRVTRHRLVIQWENPQLrWCFPCQ 161
Cdd:pfam02148   5 GNTSNLWLCLTCGHVGCG-----RYQNSHALEHYEETGHPLAVNLSTLTV-YCYPCD 55
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
703-955 1.33e-50

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 179.89  E-value: 1.33e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 703 DDSDLPVSVERCLGHFTKHEILSDDNAWNCENCSKnlklqrlrekrksnedesrssntsngwvkenedegfgeteilavk 782
Cdd:cd02667 105 DEIKSECSIESCLKQFTEVEILEGNNKFACENCTK--------------------------------------------- 139
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 783 qdpndtscvkdhssdgrkaarihsadeseskgtqdededsekvitvkrdATKKVLINKAPPVLTIHLKRFSQDLRGRLSK 862
Cdd:cd02667 140 -------------------------------------------------AKKQYLISKLPPVLVIHLKRFQQPRSANLRK 170
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 863 LNGHVAFKEVIDLRQYMDSRC---SGEDPPVYRLAGLVEHSGTMRGGHYVAYVR-------GGQRVKETDSSSTA----- 927
Cdd:cd02667 171 VSRHVSFPEILDLAPFCDPKCnssEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKvrppqqrLSDLTKSKPAADEAgpgsg 250
                       250       260
                ....*....|....*....|....*....
gi 18390446 928 -WYNVSDAYVRQVSLEKVLHSEAYILFYE 955
Cdd:cd02667 251 qWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 1.88e-42

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 156.39  E-value: 1.88e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKengsgvggplasslrklftetkpeaglksviNPRAFFGSFCSKAPQFRGY 311
Cdd:cd02667   1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------TPKELFSQVCRKAPQFKGY 49
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18390446 312 DQHDSHELLRCLLDSLSteesalrkkrgvsdndekstTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02667  50 QQQDSHELLRYLLDGLR--------------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSL 101
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
231-383 9.78e-33

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 129.48  E-value: 9.78e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446   231 RGLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGSGVGGP------LASSLRKLFTETKPeAGLKSVINPRAFFGSFCSK 304
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRynkdinLLCALRDLFKALQK-NSKSSSVSPKMFKKSLGKL 79
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 18390446   305 APQFRGYDQHDSHELLRCLLDSLSTEESALRKKRGVSdndeksttLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:pfam00443  80 NPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENES--------LITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSL 150
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
788-954 3.01e-28

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 116.00  E-value: 3.01e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446   788 TSCVKDHSSDGRKAARIHSADESESKGtQDEDEDSEKVITV-------------KRDATKKVLINKAPPVLTIHLKRFSQ 854
Cdd:pfam00443 138 VSETFEPFSDLSLPIPGDSAELKTASL-QICFLQFSKLEELddeekyycdkcgcKQDAIKQLKISRLPPVLIIHLKRFSY 216
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446   855 DLRGRlSKLNGHVAFKEVIDLRQYMdsrCSGEDP-----PVYRLAGLVEHSGTMRGGHYVAYVRGGQRVKetdssstaWY 929
Cdd:pfam00443 217 NRSTW-EKLNTEVEFPLELDLSRYL---AEELKPktnnlQDYRLVAVVVHSGSLSSGHYIAYIKAYENNR--------WY 284
                         170       180
                  ....*....|....*....|....*.
gi 18390446   930 NVSDAYVRQVSLEK-VLHSEAYILFY 954
Cdd:pfam00443 285 KFDDEKVTEVDEETaVLSSSAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
232-956 3.73e-21

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 99.57  E-value: 3.73e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFL---------KENGSGVGGPLASS----LRKLFTetkpeaGLKSVINPRAFF 298
Cdd:COG5560 267 GLRNLGNTCYMNSALQCLMHTWELRDYFLsdeyeesinEENPLGMHGSVASAyadlIKQLYD------GNLHAFTPSGFK 340
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 299 GSFCSKAPQFRGYDQHDSHELLRCLLDSLSTEESALRKKR-----GVSDNDE----------------KSTTLIESVFGG 357
Cdd:COG5560 341 KTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPytskpDLSPGDDvvvkkkakecwwehlkRNDSIITDLFQG 420
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 358 ETSSIVSCMECGHSSKVYEPFLDLSLpvpfkksppkkpqpvsrakkaKLPPKRVPKNVskvskvskvlpgMVLSELNSSG 437
Cdd:COG5560 421 MYKSTLTCPGCGSVSITFDPFMDLTL---------------------PLPVSMVWKHT------------IVVFPESGRR 467
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 438 KSMAVTADSDTSCSSL-----APLDNGPVLETPSVLTLDNNQASESASQSDTgfdgsWLDFIGPEtsgdetnldmqedgi 512
Cdd:COG5560 468 QPLKIELDASSTIRGLkklvdAEYGKLGCFEIKVMCIYYGGNYNMLEPADKV-----LLQDIPQT--------------- 527
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 513 DNVITAEVNQ---IVPSPNIVANSSVSS----GDQTLEGNTERLMQDYEEIAKAEANLDEKdVQAMQSDECPATSGIsae 585
Cdd:COG5560 528 DFVYLYETNDngiEVPVVHLRIEKGYKSkrlfGDPFLQLNVLIKASIYDKLVKEFEELLVL-VEMKKTDVDLVSEQV--- 603
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 586 fsqascigcdpGIGESSSSVNPWDEEELPLVVADSQILymPYKEISCNDKSVEGECEasssfvtgdHEPQNSDFvdfggL 665
Cdd:COG5560 604 -----------RLLREESSPSSWLKLETEIDTKREEQV--EEEGQMNFNDAVVISCE---------WEEKRYLS-----L 656
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 666 FDEPETtegpvfGPPSKAEasgvgfmaFSSESdpeeiddsdlpVSVERCLGHFTKHEILSDDNAWNCENCsknlklqrlr 745
Cdd:COG5560 657 FSYDPL------WTIREIG--------AAERT-----------ITLQDCLNEFSKPEQLGLSDSWYCPGC---------- 701
                       570       580       590       600       610       620       630       640
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 746 ekrksnedesrssntsngwvKEnedegfgeteilavkqdpndtscvkdhssdgrkaarihsadeseskgtqdededsekv 825
Cdd:COG5560 702 --------------------KE---------------------------------------------------------- 703
                       650       660       670       680       690       700       710       720
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 826 itvKRDATKKVLINKAPPVLTIHLKRFSQDLRGRLsKLNGHVAFK-EVIDLRQYMDSRcsgEDPPV-YRLAGLVEHSGTM 903
Cdd:COG5560 704 ---FRQASKQMELWRLPMILIIHLKRFSSVRSFRD-KIDDLVEYPiDDLDLSGVEYMV---DDPRLiYDLYAVDNHYGGL 776
                       730       740       750       760       770
                ....*....|....*....|....*....|....*....|....*....|...
gi 18390446 904 RGGHYVAYVRggqrvketDSSSTAWYNVSDAYVRQVSLEKVLHSEAYILFYER 956
Cdd:COG5560 777 SGGHYTAYAR--------NFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
810-957 7.65e-15

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 75.99  E-value: 7.65e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 810 SESKGTQDEDEDSEKVITVKRDATKKVlinKAPPVLTIHLKRFSQDLRGRlsKLNGHVafKEVIDLRQYMDSRCSGEDPP 889
Cdd:COG5533 151 DDETGVKAKENEELEVQAKQEYEVSFV---KLPKILTIQLKRFANLGGNQ--KIDTEV--DEKFELPVKHDQILNIVKET 223
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18390446 890 VYRLAGLVEHSGTMRGGHYVAYVRGGQRvketdssstaWYNVSDAYVRQVSLEKVLHSE---AYILFYERI 957
Cdd:COG5533 224 YYDLVGFVLHQGSLEGGHYIAYVKKGGK----------WEKANDSDVTPVSEEEAINEKaknAYLYFYERI 284
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
105-161 3.94e-09

Zn-finger in ubiquitin-hydrolases and other protein;


Pssm-ID: 460464  Cd Length: 63  Bit Score: 53.42  E-value: 3.94e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18390446   105 SNNKAIWLCLECGCYVCGgvglpNGPQSHVLRHSRVTRHRLVIQWENPQLrWCFPCQ 161
Cdd:pfam02148   5 GNTSNLWLCLTCGHVGCG-----RYQNSHALEHYEETGHPLAVNLSTLTV-YCYPCD 55
ZnF_UBP smart00290
Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;
106-154 4.11e-08

Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;


Pssm-ID: 197632  Cd Length: 50  Bit Score: 50.44  E-value: 4.11e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 18390446    106 NNKAIWLCLECGCYVCGgvglpNGPQSHVLRHSRVTRHRLVIQWENPQL 154
Cdd:smart00290   7 TIENLWLCLTCGQVGCG-----RYQNGHALEHFEETGHPLVVKLGTQRV 50
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
232-327 2.04e-04

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 44.41  E-value: 2.04e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 232 GLVNLGNTCFFNSIMQNL-LSLDRLRDHFlkengsgvgGPLASSLRKLFTE-TKPEAGLKSVINPRAFFGSFCSKAPQFR 309
Cdd:COG5533   1 GLPNLGNTCFMNSVLQILaLYLPKLDELL---------DDLSKELKVLKNViRKPEPDLNQEEALKLFTALWSSKEHKVG 71
                        90       100
                ....*....|....*....|..
gi 18390446 310 G----YDQHDSHELLRCLLDSL 327
Cdd:COG5533  72 WippmGSQEDAHELLGKLLDEL 93
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
703-955 1.33e-50

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 179.89  E-value: 1.33e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 703 DDSDLPVSVERCLGHFTKHEILSDDNAWNCENCSKnlklqrlrekrksnedesrssntsngwvkenedegfgeteilavk 782
Cdd:cd02667 105 DEIKSECSIESCLKQFTEVEILEGNNKFACENCTK--------------------------------------------- 139
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 783 qdpndtscvkdhssdgrkaarihsadeseskgtqdededsekvitvkrdATKKVLINKAPPVLTIHLKRFSQDLRGRLSK 862
Cdd:cd02667 140 -------------------------------------------------AKKQYLISKLPPVLVIHLKRFQQPRSANLRK 170
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 863 LNGHVAFKEVIDLRQYMDSRC---SGEDPPVYRLAGLVEHSGTMRGGHYVAYVR-------GGQRVKETDSSSTA----- 927
Cdd:cd02667 171 VSRHVSFPEILDLAPFCDPKCnssEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKvrppqqrLSDLTKSKPAADEAgpgsg 250
                       250       260
                ....*....|....*....|....*....
gi 18390446 928 -WYNVSDAYVRQVSLEKVLHSEAYILFYE 955
Cdd:cd02667 251 qWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 1.88e-42

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 156.39  E-value: 1.88e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKengsgvggplasslrklftetkpeaglksviNPRAFFGSFCSKAPQFRGY 311
Cdd:cd02667   1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------TPKELFSQVCRKAPQFKGY 49
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18390446 312 DQHDSHELLRCLLDSLSteesalrkkrgvsdndekstTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02667  50 QQQDSHELLRYLLDGLR--------------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSL 101
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
231-383 9.78e-33

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 129.48  E-value: 9.78e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446   231 RGLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGSGVGGP------LASSLRKLFTETKPeAGLKSVINPRAFFGSFCSK 304
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRynkdinLLCALRDLFKALQK-NSKSSSVSPKMFKKSLGKL 79
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 18390446   305 APQFRGYDQHDSHELLRCLLDSLSTEESALRKKRGVSdndeksttLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:pfam00443  80 NPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENES--------LITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSL 150
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
701-954 1.04e-32

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 128.93  E-value: 1.04e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 701 EIDDSDlpvSVERCLGHFTKHEILSDDNAWNCENCSKnlklqrlrekrksnedesrssntsngwvkenedegfgeteila 780
Cdd:cd02661 157 DIKGAD---SLEDALEQFTKPEQLDGENKYKCERCKK------------------------------------------- 190
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 781 vkqdpndtscvkdhssdgrkaarihsadeseskgtqdededsekvitvKRDATKKVLINKAPPVLTIHLKRFSQdlrGRL 860
Cdd:cd02661 191 ------------------------------------------------KVKASKQLTIHRAPNVLTIHLKRFSN---FRG 219
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 861 SKLNGHVAFKEVIDLRQYMDSrcSGEDPPVYRLAGLVEHSGT-MRGGHYVAYVRggqrvketdSSSTAWYNVSDAYVRQV 939
Cdd:cd02661 220 GKINKQISFPETLDLSPYMSQ--PNDGPLKYKLYAVLVHSGFsPHSGHYYCYVK---------SSNGKWYNMDDSKVSPV 288
                       250
                ....*....|....*
gi 18390446 940 SLEKVLHSEAYILFY 954
Cdd:cd02661 289 SIETVLSQKAYILFY 303
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
829-955 3.20e-32

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 126.06  E-value: 3.20e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 829 KRDATKKVLINKAPPVLTIHLKRFSQDLRGRLSKLNGHVAFKEVIDLRQYMDSRC----SGEDPPVYRLAGLVEHSGT-M 903
Cdd:cd02257 127 KQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLSPYLSEGEkdsdSDNGSYKYELVAVVVHSGTsA 206
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 18390446 904 RGGHYVAYVRggqrvketDSSSTAWYNVSDAYVRQVSLEKVL-----HSEAYILFYE 955
Cdd:cd02257 207 DSGHYVAYVK--------DPSDGKWYKFNDDKVTEVSEEEVLefgslSSSAYILFYE 255
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
788-954 3.01e-28

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 116.00  E-value: 3.01e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446   788 TSCVKDHSSDGRKAARIHSADESESKGtQDEDEDSEKVITV-------------KRDATKKVLINKAPPVLTIHLKRFSQ 854
Cdd:pfam00443 138 VSETFEPFSDLSLPIPGDSAELKTASL-QICFLQFSKLEELddeekyycdkcgcKQDAIKQLKISRLPPVLIIHLKRFSY 216
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446   855 DLRGRlSKLNGHVAFKEVIDLRQYMdsrCSGEDP-----PVYRLAGLVEHSGTMRGGHYVAYVRGGQRVKetdssstaWY 929
Cdd:pfam00443 217 NRSTW-EKLNTEVEFPLELDLSRYL---AEELKPktnnlQDYRLVAVVVHSGSLSSGHYIAYIKAYENNR--------WY 284
                         170       180
                  ....*....|....*....|....*.
gi 18390446   930 NVSDAYVRQVSLEK-VLHSEAYILFY 954
Cdd:pfam00443 285 KFDDEKVTEVDEETaVLSSSAYILFY 310
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
828-955 1.28e-27

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 112.00  E-value: 1.28e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 828 VKRDATKKVLINKAPPVLTIHLKRFSQDlRGRLSKLNGHVAFK-EVIDLRQYMDSRcSGEDPPVYRLAGLVEHSGTMRGG 906
Cdd:cd02674 112 KKRKATKKLTISRLPKVLIIHLKRFSFS-RGSTRKLTTPVTFPlNDLDLTPYVDTR-SFTGPFKYDLYAVVNHYGSLNGG 189
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 18390446 907 HYVAYVRggqrvketDSSSTAWYNVSDAYVRQVSLEKVLHSEAYILFYE 955
Cdd:cd02674 190 HYTAYCK--------NNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
829-954 2.16e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 105.15  E-value: 2.16e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 829 KRDATKKVLINKAPPVLTIHLKRFSQDLRGRLSKLNGHVAFKEVIDLRQYMDSRC-----SGEDPP--VYRLAGLVEHSG 901
Cdd:cd02660 204 TQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSSIgdtqdSNSLDPdyTYDLFAVVVHKG 283
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 18390446 902 TMRGGHYVAYVRGGQRVketdssstaWYNVSDAYVRQVSLEKVLHSEAYILFY 954
Cdd:cd02660 284 TLDTGHYTAYCRQGDGQ---------WFKFDDAMITRVSEEEVLKSQAYLLFY 327
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
231-383 9.67e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 102.74  E-value: 9.67e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 231 RGLVNLGNTCFFNSIMQNLLSLDRLRDHFL-KENGSGVGGPLASSLRKL--FTETKPEAGLKSvINPRAFFGSFCSKAPQ 307
Cdd:cd02661   2 AGLQNLGNTCFLNSVLQCLTHTPPLANYLLsREHSKDCCNEGFCMMCALeaHVERALASSGPG-SAPRIFSSNLKQISKH 80
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18390446 308 FRGYDQHDSHELLRCLLDSLstEESALRKKRGVSDNDEKS--TTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02661  81 FRIGRQEDAHEFLRYLLDAM--QKACLDRFKKLKAVDPSSqeTTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSL 156
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
817-955 1.50e-22

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 97.82  E-value: 1.50e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 817 DEDEDSEKVITVKRDaTKKVLINKAPPVLTIHLKRFSQDLRGRLSKLNGHVAFKEVidLRQYMdsrcsgedppvYRLAGL 896
Cdd:cd02662 103 DDFLSTEIIDDYKCD-RCQTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPER--LPKVL-----------YRLRAV 168
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18390446 897 VEHSGTMRGGHYVAYVRGGQRVKETDSSSTA------------WYNVSDAYVRQVSLEKVL-HSEAYILFYE 955
Cdd:cd02662 169 VVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVrmregpsstshpWWRISDTTVKEVSESEVLeQKSAYMLFYE 240
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
232-956 3.73e-21

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 99.57  E-value: 3.73e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFL---------KENGSGVGGPLASS----LRKLFTetkpeaGLKSVINPRAFF 298
Cdd:COG5560 267 GLRNLGNTCYMNSALQCLMHTWELRDYFLsdeyeesinEENPLGMHGSVASAyadlIKQLYD------GNLHAFTPSGFK 340
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 299 GSFCSKAPQFRGYDQHDSHELLRCLLDSLSTEESALRKKR-----GVSDNDE----------------KSTTLIESVFGG 357
Cdd:COG5560 341 KTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPytskpDLSPGDDvvvkkkakecwwehlkRNDSIITDLFQG 420
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 358 ETSSIVSCMECGHSSKVYEPFLDLSLpvpfkksppkkpqpvsrakkaKLPPKRVPKNVskvskvskvlpgMVLSELNSSG 437
Cdd:COG5560 421 MYKSTLTCPGCGSVSITFDPFMDLTL---------------------PLPVSMVWKHT------------IVVFPESGRR 467
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 438 KSMAVTADSDTSCSSL-----APLDNGPVLETPSVLTLDNNQASESASQSDTgfdgsWLDFIGPEtsgdetnldmqedgi 512
Cdd:COG5560 468 QPLKIELDASSTIRGLkklvdAEYGKLGCFEIKVMCIYYGGNYNMLEPADKV-----LLQDIPQT--------------- 527
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 513 DNVITAEVNQ---IVPSPNIVANSSVSS----GDQTLEGNTERLMQDYEEIAKAEANLDEKdVQAMQSDECPATSGIsae 585
Cdd:COG5560 528 DFVYLYETNDngiEVPVVHLRIEKGYKSkrlfGDPFLQLNVLIKASIYDKLVKEFEELLVL-VEMKKTDVDLVSEQV--- 603
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 586 fsqascigcdpGIGESSSSVNPWDEEELPLVVADSQILymPYKEISCNDKSVEGECEasssfvtgdHEPQNSDFvdfggL 665
Cdd:COG5560 604 -----------RLLREESSPSSWLKLETEIDTKREEQV--EEEGQMNFNDAVVISCE---------WEEKRYLS-----L 656
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 666 FDEPETtegpvfGPPSKAEasgvgfmaFSSESdpeeiddsdlpVSVERCLGHFTKHEILSDDNAWNCENCsknlklqrlr 745
Cdd:COG5560 657 FSYDPL------WTIREIG--------AAERT-----------ITLQDCLNEFSKPEQLGLSDSWYCPGC---------- 701
                       570       580       590       600       610       620       630       640
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 746 ekrksnedesrssntsngwvKEnedegfgeteilavkqdpndtscvkdhssdgrkaarihsadeseskgtqdededsekv 825
Cdd:COG5560 702 --------------------KE---------------------------------------------------------- 703
                       650       660       670       680       690       700       710       720
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 826 itvKRDATKKVLINKAPPVLTIHLKRFSQDLRGRLsKLNGHVAFK-EVIDLRQYMDSRcsgEDPPV-YRLAGLVEHSGTM 903
Cdd:COG5560 704 ---FRQASKQMELWRLPMILIIHLKRFSSVRSFRD-KIDDLVEYPiDDLDLSGVEYMV---DDPRLiYDLYAVDNHYGGL 776
                       730       740       750       760       770
                ....*....|....*....|....*....|....*....|....*....|...
gi 18390446 904 RGGHYVAYVRggqrvketDSSSTAWYNVSDAYVRQVSLEKVLHSEAYILFYER 956
Cdd:COG5560 777 SGGHYTAYAR--------NFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
231-383 1.68e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 93.59  E-value: 1.68e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 231 RGLVNLGNTCFFNSIMQNLLSLDRLRDHFLKE---NGSGVGGP---LASSLRKLFTETKpEAGLKSVINPRAFFGSFCSK 304
Cdd:cd02660   1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDrhsCTCLSCSPnscLSCAMDEIFQEFY-YSGDRSPYGPINLLYLSWKH 79
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 18390446 305 APQFRGYDQHDSHELLRCLLDSLSTeeSALRKKRGVSDNDEkSTTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02660  80 SRNLAGYSQQDAHEFFQFLLDQLHT--HYGGDKNEANDESH-CNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSL 155
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
829-957 2.86e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 93.09  E-value: 2.86e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 829 KRDATKKVLINKAPPVLTIHLKRFSQDL-RGRLSKLNGHVAFKEVIDLRQYMD---SRCSGEDPP------VYRLAGLVE 898
Cdd:cd02659 180 KVDAEKGVCFKKLPPVLTLQLKRFEFDFeTMMRIKINDRFEFPLELDMEPYTEkglAKKEGDSEKkdsesyIYELHGVLV 259
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18390446 899 HSGTMRGGHYVAYVRGG----------QRVKETDSSSTA--WYNVSDAYVRQVSLEK--VLHSEAYILFYERI 957
Cdd:cd02659 260 HSGDAHGGHYYSYIKDRddgkwykfndDVVTPFDPNDAEeeCFGGEETQKTYDSGPRafKRTTNAYMLFYERK 332
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
232-383 3.40e-18

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 85.23  E-value: 3.40e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 232 GLVNLGNTCFFNSIMQNLLSldrlrdhflkengsgvggplasslrklftetkpeaglksvinpraffgsfcskapqfrgy 311
Cdd:cd02257   1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18390446 312 DQHDSHELLRCLLDSLsteESALRKKRGVSDNDEKSTTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02257  21 EQQDAHEFLLFLLDKL---HEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSL 89
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 2.28e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 78.30  E-value: 2.28e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGSGVGG--PLASSLRKLFT---ETKPEAGLKsvinPRAFFGSfcSKAP 306
Cdd:cd02664   1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDsqSVMKKLQLLQAhlmHTQRRAEAP----PDYFLEA--SRPP 74
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18390446 307 QFRGYDQHDSHELLRCLLDSLSteesalrkkrgvsdndekstTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02664  75 WFTPGSQQDCSEYLRYLLDRLH--------------------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDL 131
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 3.17e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 77.35  E-value: 3.17e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 232 GLVNLGNTCFFNSIMQNLLSldrlrdhflkENgsgvggpLASSLRKLF---TETKPEAGlksVINPRAFFGSFCSKAPQF 308
Cdd:cd02663   1 GLENFGNTCYCNSVLQALYF----------EN-------LLTCLKDLFesiSEQKKRTG---VISPKKFITRLKRENELF 60
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 309 RGYDQHDSHELLRCLL----DSLSTEESALRKKRGVSDN--DEKSTTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLS 382
Cdd:cd02663  61 DNYMHQDAHEFLNFLLneiaEILDAERKAEKANRKLNNNnnAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLS 140

                .
gi 18390446 383 L 383
Cdd:cd02663 141 I 141
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
227-383 6.17e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 77.30  E-value: 6.17e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 227 GYVvrGLVNLGNTCFFNSIMQNLLSLDRLRDHFL----KENGSGVGGpLASSLRKLFTETkpEAGLKSVI--NPRAFFGS 300
Cdd:cd02659   1 GYV--GLKNQGATCYMNSLLQQLYMTPEFRNAVYsippTEDDDDNKS-VPLALQRLFLFL--QLSESPVKttELTDKTRS 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 301 FCSKApqFRGYDQHDSHELLRCLLDSLsteesalrkkrgvsDNDEKSTT---LIESVFGGETSSIVSCMECGHSSKVYEP 377
Cdd:cd02659  76 FGWDS--LNTFEQHDVQEFFRVLFDKL--------------EEKLKGTGqegLIKNLFGGKLVNYIICKECPHESEREEY 139

                ....*.
gi 18390446 378 FLDLSL 383
Cdd:cd02659 140 FLDLQV 145
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
810-957 7.65e-15

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 75.99  E-value: 7.65e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 810 SESKGTQDEDEDSEKVITVKRDATKKVlinKAPPVLTIHLKRFSQDLRGRlsKLNGHVafKEVIDLRQYMDSRCSGEDPP 889
Cdd:COG5533 151 DDETGVKAKENEELEVQAKQEYEVSFV---KLPKILTIQLKRFANLGGNQ--KIDTEV--DEKFELPVKHDQILNIVKET 223
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18390446 890 VYRLAGLVEHSGTMRGGHYVAYVRGGQRvketdssstaWYNVSDAYVRQVSLEKVLHSE---AYILFYERI 957
Cdd:COG5533 224 YYDLVGFVLHQGSLEGGHYIAYVKKGGK----------WEKANDSDVTPVSEEEAINEKaknAYLYFYERI 284
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 9.06e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 76.22  E-value: 9.06e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGSGVG-----GPLASSLRKLFTE--TKPEAglksvINPRAFFGSFCSK 304
Cdd:cd02657   1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGanqssDNLTNALRDLFDTmdKKQEP-----VPPIEFLQLLRMA 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 305 APQF------RGYDQHDSHELLRCLLDSLSteeSALRKKRGVSDNdeksttlIESVFGGETSSIVSCMECGHSSKV-YEP 377
Cdd:cd02657  76 FPQFaekqnqGGYAQQDAEECWSQLLSVLS---QKLPGAGSKGSF-------IDQLFGIELETKMKCTESPDEEEVsTES 145

                ....*.
gi 18390446 378 FLDLSL 383
Cdd:cd02657 146 EYKLQC 151
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
829-955 1.90e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 72.45  E-value: 1.90e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 829 KRDATKKVLINKAPPVLTIHLKRFSQDLR-GRLSKLNGHVAFKEVIDLRQYMDSrcSGEDPPVYRLAGLVEHSGT-MRGG 906
Cdd:cd02668 185 KTDATRRIRLTTLPPTLNFQLLRFVFDRKtGAKKKLNASISFPEILDMGEYLAE--SDEGSYVYELSGVLIHQGVsAYSG 262
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 907 HYVAYVRggqrvketDSSSTAWYNVSDAYV-------------------RQVSLEKVLHS--EAYILFYE 955
Cdd:cd02668 263 HYIAHIK--------DEQTGEWYKFNDEDVeempgkplklgnsedpakpRKSEIKKGTHSsrTAYMLVYK 324
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 2.03e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 69.54  E-value: 2.03e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 232 GLVNLGNTCFFNSIMQNLlsldRLRDHFLKENGSGVGGPLASSLRKLFTETKPE--AGLKSVINPRAFFGSFCSKAPQFR 309
Cdd:cd02671  26 GLNNLGNTCYLNSVLQVL----YFCPGFKHGLKHLVSLISSVEQLQSSFLLNPEkyNDELANQAPRRLLNALREVNPMYE 101
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 18390446 310 GYDQHDSHELLRCLLDSLSteesalrkkrgvsdndekstTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02671 102 GYLQHDAQEVLQCILGNIQ--------------------ELVEKDFQGQLVLRTRCLECETFTERREDFQDISV 155
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
831-945 5.40e-12

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 70.28  E-value: 5.40e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446  831 DATKKVLINKAPPVLTIHLKRFSQD-LRGRLSKLNGHVAFKEVIDLRQYM--DSRCSGEDPPVYRLAGLVEHSGTMRGGH 907
Cdd:COG5077  368 DAKKGVIFESLPPVLHLQLKRFEYDfERDMMVKINDRYEFPLEIDLLPFLdrDADKSENSDAVYVLYGVLVHSGDLHEGH 447
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 18390446  908 YVAYVRggqrvKETDSSstaWYNVSDAYVRQVSLEKVL 945
Cdd:COG5077  448 YYALLK-----PEKDGR---WYKFDDTRVTRATEKEVL 477
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 1.41e-11

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 65.39  E-value: 1.41e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 232 GLVNLGNTCFFNSIMQNLLSldrlrdhflkengsgvggplasslrklftetkpeaglksvinpraffgsfcskapqfrgy 311
Cdd:cd02674   1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18390446 312 DQHDSHELLRCLLDSLsteESalrkkrgvsdndeksttLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSL 383
Cdd:cd02674  21 DQQDAQEFLLFLLDGL---HS-----------------IIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSL 72
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
831-954 5.50e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 64.91  E-value: 5.50e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 831 DATKKVLINKAPPVLTIHLKRFSQ-----DLRGRLSKLNGHVAFKEVIDLRQYmdsrCSGEDPPVYRLAGLVEHSG-TMR 904
Cdd:cd02671 211 EAERSLLFDKLPEVITIHLKCFAAngsefDCYGGLSKVNTPLLTPLKLSLEEW----STKPKNDVYRLFAVVMHSGaTIS 286
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 18390446 905 GGHYVAYVRggqrvketdssstaWYNVSDAYVR---QVSLEKVLH------SEAYILFY 954
Cdd:cd02671 287 SGHYTAYVR--------------WLLFDDSEVKvteEKDFLEALSpntsstSTPYLLFY 331
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 8.52e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 63.15  E-value: 8.52e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHflkengsgvggplasslrklftetkpeagLKSVINpraffgsfcskapqfrgy 311
Cdd:cd02662   1 GLVNLGNTCFMNSVLQALASLPSLIEY-----------------------------LEEFLE------------------ 33
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18390446 312 dQHDSHELLRCLLDSLsteesalrkkrgvsdnDEKSTTLIEsvfgGETSSIVSCMECGHSSKV-YEPFLDLSL 383
Cdd:cd02662  34 -QQDAHELFQVLLETL----------------EQLLKFPFD----GLLASRIVCLQCGESSKVrYESFTMLSL 85
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 1.58e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 60.51  E-value: 1.58e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGSGVGGPLASSLRKLFTETKP-----------EAGLKSVINPRAFFgs 300
Cdd:cd02668   1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIidqlqlifaqlQFGNRSVVDPSGFV-- 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 301 fcsKAPQFRGYDQHDSHELLRCLLDSLsteESALRKKrgvsdNDEKSTTLIESVFGGETSSIVSCMECGHSSKVYEPFLD 380
Cdd:cd02668  79 ---KALGLDTGQQQDAQEFSKLFLSLL---EAKLSKS-----KNPDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYE 147

                ...
gi 18390446 381 LSL 383
Cdd:cd02668 148 LEL 150
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
829-955 2.68e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 59.63  E-value: 2.68e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 829 KRDATKKVLINKAPPVLTIHLKRFSQDLR-GRLSKLNGHVAFKevIDLRQYMDSRCSGEDPPVYRLAGLVEH--SGTMRg 905
Cdd:cd02663 176 LQEAEKRMKIKKLPKILALHLKRFKYDEQlNRYIKLFYRVVFP--LELRLFNTTDDAENPDRLYELVAVVVHigGGPNH- 252
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 18390446 906 GHYVAYVR-GGQRVKETDSSSTAwynVSDAYVRQVSLEKVLHSEAYILFYE 955
Cdd:cd02663 253 GHYVSIVKsHGGWLLFDDETVEK---IDENAVEEFFGDSPNQATAYVLFYQ 300
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
105-161 3.94e-09

Zn-finger in ubiquitin-hydrolases and other protein;


Pssm-ID: 460464  Cd Length: 63  Bit Score: 53.42  E-value: 3.94e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 18390446   105 SNNKAIWLCLECGCYVCGgvglpNGPQSHVLRHSRVTRHRLVIQWENPQLrWCFPCQ 161
Cdd:pfam02148   5 GNTSNLWLCLTCGHVGCG-----RYQNSHALEHYEETGHPLAVNLSTLTV-YCYPCD 55
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
818-955 4.33e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 58.88  E-value: 4.33e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 818 EDEDSEKVITVKRDA--TKKVLINKAPPVLTIHLKRFS-QDLRGRLSKLNGHVAFKEVIDLRQYmdsrCSGEDppVYRLA 894
Cdd:cd02657 171 EEEIEKHSPTLGRDAiyTKTSRISRLPKYLTVQFVRFFwKRDIQKKAKILRKVKFPFELDLYEL----CTPSG--YYELV 244
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 895 GLVEHSG-TMRGGHYVAYVRggqrvketDSSSTAWYNVSDAYVRQVSLEKVL--------HSeAYILFYE 955
Cdd:cd02657 245 AVITHQGrSADSGHYVAWVR--------RKNDGKWIKFDDDKVSEVTEEDILklsgggdwHI-AYILLYK 305
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
830-955 7.10e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 58.66  E-value: 7.10e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 830 RDATKKVLINKAPPVLTIHLKRFSQDLRGRL-SKLNGHVAFKEVIDL--------------RQYMDSRCSGE---DPPVY 891
Cdd:cd02664 164 QDAEKEMKVTGAPEYLILTLLRFSYDQKTHVrEKIMDNVSINEVLSLpvrveskssespleKKEEESGDDGElvtRQVHY 243
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 892 RLAGLVEHSGT-MRGGHYVAYVRGG-------------QRVKETDSSSTaWYNVSDAYVRQVSLEKVL-------HSEAY 950
Cdd:cd02664 244 RLYAVVVHSGYsSESGHYFTYARDQtdadstgqecpepKDAEENDESKN-WYLFNDSRVTFSSFESVQnvtsrfpKDTPY 322

                ....*
gi 18390446 951 ILFYE 955
Cdd:cd02664 323 ILFYE 327
ZnF_UBP smart00290
Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;
106-154 4.11e-08

Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;


Pssm-ID: 197632  Cd Length: 50  Bit Score: 50.44  E-value: 4.11e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 18390446    106 NNKAIWLCLECGCYVCGgvglpNGPQSHVLRHSRVTRHRLVIQWENPQL 154
Cdd:smart00290   7 TIENLWLCLTCGQVGCG-----RYQNGHALEHFEETGHPLVVKLGTQRV 50
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
820-955 2.26e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 50.78  E-value: 2.26e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 820 EDSEKVITVKRDATKKVLINKAPPVLTIHLKRFSQDLRGRLSKLNGHVAFKEVIdlrqymdsrcsgeDPPVYRLAGLVEH 899
Cdd:cd02658 194 EDFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEEL-------------GPGKYELIAFISH 260
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 18390446 900 SGT-MRGGHYVAYVRggqrvKETDSSSTaW--YNvsDAYVRQVSLEKVLHSEAYILFYE 955
Cdd:cd02658 261 KGTsVHSGHYVAHIK-----KEIDGEGK-WvlFN--DEKVVASQDPPEMKKLGYIYFYQ 311
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
818-955 3.20e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 49.45  E-value: 3.20e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 818 EDEDSEKVITVK----RDATKKVLiNKAPPVLTIHLKRFSQdLRGRLSKLNGHVAFKEVIDLRQYM------DSRCSGED 887
Cdd:cd02670  72 PDDDDGGGITLEqcleQYFNNSVF-AKAPSCLIICLKRYGK-TEGKAQKMFKKILIPDEIDIPDFVaddpraCSKCQLEC 149
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 888 PPVYR--------------LAGLVEHSGTMR-GGHYVAYVRGG---QRVKETDSSSTAWYNVSDAYVRQVSLE------K 943
Cdd:cd02670 150 RVCYDdkdfsptcgkfklsLCSAVCHRGTSLeTGHYVAFVRYGsysLTETDNEAYNAQWVFFDDMADRDGVSNgfnipaA 229
                       170
                ....*....|..
gi 18390446 944 VLHSEAYILFYE 955
Cdd:cd02670 230 RLLEDPYMLFYQ 241
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
831-955 9.87e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 49.24  E-value: 9.87e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 831 DATKKVLINKAPPVLTIHLKRFsqdlrgrlSKLNGH-------VAFKEVI-DLRQYMDSRCSGEDPPV-YRLAGLVEHSG 901
Cdd:cd02669 322 DSLKRYLISRLPKYLIFHIKRF--------SKNNFFkeknptiVNFPIKNlDLSDYVHFDKPSLNLSTkYNLVANIVHEG 393
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 18390446 902 TMRG-GHYVAYVRggqrvketDSSSTAWYNVSDAYVRQVSLEKVLHSEAYILFYE 955
Cdd:cd02669 394 TPQEdGTWRVQLR--------HKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
113-358 5.19e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 46.93  E-value: 5.19e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 113 CLECGCYVCGGvglpnGPQSHVLRHSRVTRHRLVIQWENPQLrWCFPcqlllpvekeDNGEKKDVLSEVVKLIKGRSLNN 192
Cdd:cd02669  31 CLVCGKYFQGR-----GKGSHAYTHSLEDNHHVFLNLETLKF-YCLP----------DNYEIIDSSLDDIKYVLNPTYTK 94
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 193 LASSDIEDQCSGSGSItsdiklegavtSDIEARDGYVvrGLVNLGNTCFFNSIMQNLLSLDRLRDHFL--------KENG 264
Cdd:cd02669  95 EQISDLDRDPKLSRDL-----------DGKPYLPGFV--GLNNIKNNDYANVIIQALSHVKPIRNFFLlyenyeniKDRK 161
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 265 SGVGGPLASSLRKLFTetkPEAgLKSVINPRAFFG--SFCSKAPqFRGYDQHDSHELLRCLLDSLsteESALRKKRGvsd 342
Cdd:cd02669 162 SELVKRLSELIRKIWN---PRN-FKGHVSPHELLQavSKVSKKK-FSITEQSDPVEFLSWLLNTL---HKDLGGSKK--- 230
                       250
                ....*....|....*.
gi 18390446 343 ndeKSTTLIESVFGGE 358
Cdd:cd02669 231 ---PNSSIIHDCFQGK 243
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-383 1.32e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 45.01  E-value: 1.32e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGS---GVGGP---LASSLRKLFT------ETKPEAGLKSV------IN 293
Cdd:cd02658   1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKfpsDVVDPandLNCQLIKLADgllsgrYSKPASLKSENdpyqvgIK 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 294 PRAFfgsfcsKA------PQFRGYDQHDSHELLRCLLDSLSTEEsalrKKRGVSDndeksttlIESVFGGETSSIVSCME 367
Cdd:cd02658  81 PSMF------KAligkghPEFSTMRQQDALEFLLHLIDKLDRES----FKNLGLN--------PNDLFKFMIEDRLECLS 142
                       170
                ....*....|....*.
gi 18390446 368 CGHSSKVYEPFLDLSL 383
Cdd:cd02658 143 CKKVKYTSELSEILSL 158
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
232-327 2.04e-04

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 44.41  E-value: 2.04e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 232 GLVNLGNTCFFNSIMQNL-LSLDRLRDHFlkengsgvgGPLASSLRKLFTE-TKPEAGLKSVINPRAFFGSFCSKAPQFR 309
Cdd:COG5533   1 GLPNLGNTCFMNSVLQILaLYLPKLDELL---------DDLSKELKVLKNViRKPEPDLNQEEALKLFTALWSSKEHKVG 71
                        90       100
                ....*....|....*....|..
gi 18390446 310 G----YDQHDSHELLRCLLDSL 327
Cdd:COG5533  72 WippmGSQEDAHELLGKLLDEL 93
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
778-955 1.68e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 41.36  E-value: 1.68e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 778 ILAVKQDPNDTSCVKDHSSDGRKAARIHSADESESkgtqdededSEKVITVKRDATkkvlinkAPPVLTIHLKRFsqDLR 857
Cdd:cd02673  99 FLDVSMIDNKLDIDELLISNFKTWSPIEKDCSSCK---------CESAISSERIMT-------FPECLSINLKRY--KLR 160
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 858 GRLSKlnghvafkEVIDLRQYMDSRCSgeDPPVYRLAGLVEHSG-TMRGGHYVAYVRggqrvkeTDSSSTAWYNVSDAYV 936
Cdd:cd02673 161 IATSD--------YLKKNEEIMKKYCG--TDAKYSLVAVICHLGeSPYDGHYIAYTK-------ELYNGSSWLYCSDDEI 223
                       170       180
                ....*....|....*....|..
gi 18390446 937 RQVSLEKVLH---SEAYILFYE 955
Cdd:cd02673 224 RPVSKNDVSTnarSSGYLIFYD 245
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
840-954 1.94e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 41.00  E-value: 1.94e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18390446 840 KAPPVLTIHLKRFSQDlRGRLSKLNGHVAFKEVIdlRQYMdsrcsgedppvYRLAGLVEHSGTMRGGHYVAYVrggqrvk 919
Cdd:cd02665 127 ELPPVLTFELSRFEFN-QGRPEKIHDKLEFPQII--QQVP-----------YELHAVLVHEGQANAGHYWAYI------- 185
                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 18390446 920 eTDSSSTAWYNVSDAYVRQVSLEKV--------LHSEAYILFY 954
Cdd:cd02665 186 -YKQSRQEWEKYNDISVTESSWEEVerdsfgggRNPSAYCLMY 227
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
232-265 6.42e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 39.78  E-value: 6.42e-03
                        10        20        30
                ....*....|....*....|....*....|....
gi 18390446 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGS 265
Cdd:cd02666   3 GLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDES 36
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
233-259 7.50e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 39.05  E-value: 7.50e-03
                        10        20
                ....*....|....*....|....*..
gi 18390446 233 LVNLGNTCFFNSIMQNLLSLDRLRDHF 259
Cdd:cd02673   2 LVNTGNSCYFNSTMQALSSIGKINTEF 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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