|
Name |
Accession |
Description |
Interval |
E-value |
| DUF3504 |
pfam12012 |
Domain of unknown function (DUF3504); This presumed domain is functionally uncharacterized. ... |
1516-1677 |
1.35e-87 |
|
Domain of unknown function (DUF3504); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 156 to 173 amino acids in length.
Pssm-ID: 463430 Cd Length: 162 Bit Score: 282.23 E-value: 1.35e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 1516 IVTRVEEEHLWECKQLGAHSPHVLLSTLMFFNTKHFNLTTVEEHMQLSFSHIMKHWKrssqnsKVPGSRNVLLRFYPPQA 1595
Cdd:pfam12012 1 VFSRVEEEHLWECKQLGAHSPIVLLNTLVYFNTKYFNLRTVEEHRRLSFSNVVRHTK------PNPREKSTYLRYYEPPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 1596 GLDANPRKK------KVYEQQENEENPLRCPVRLYEFYLSKCPESVKTRNDVFYLQPERSCVPDSPVWYSTQALGQDALQ 1669
Cdd:pfam12012 75 QVETGGRKKrdegvnKVVEQHENSENPLRCPVKLYEFYLSKCPESVKQRKDVFYLQPEPSCVPDSPLWYSSQPLGRNTLE 154
|
....*...
gi 24650584 1670 RMLHRVKM 1677
Cdd:pfam12012 155 SMLTRILL 162
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
41-308 |
5.53e-06 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 51.55 E-value: 5.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 41 SETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDADDNQSRDKAAST------PADPVDAEEPAEEPTPNEEP 114
Cdd:COG5271 317 GAAEDTEIATADELAAADDEDDDDSAAEDAAEEAATAEDSAAEDTQDAEDEAAGeaadesEGADTDAAADEADAAADDSA 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 115 QGGEDEQPQTEAVRVDPQEEPeeaeEETDALQATAEEVEAAAAEADAVDGGPA-SPEAMDVDEGEVDAEGEAEQEAEDDA 193
Cdd:COG5271 397 DDEEASADGGTSPTSDTDEEE----EEADEDASAGETEDESTDVTSAEDDIATdEEADSLADEEEEAEAELDTEEDTESA 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 194 ALDR---EATDDVDMQSVGADSHQAEDAEPPEGRDEVDTSLEEQENGQDPDEREKDAaadeddpdaegDAESEQVDENAE 270
Cdd:COG5271 473 EEDAdgdEATDEDDASDDGDEEEAEEDAEAEADSDELTAEETSADDGADTDAAADPE-----------DSDEDALEDETE 541
|
250 260 270
....*....|....*....|....*....|....*...
gi 24650584 271 ETGEAEHGDDTVENVLEPEESDVCLIPDDQETEVTEAE 308
Cdd:COG5271 542 GEENAPGSDQDADETDEPEATAEEDEPDEAEAETEDAT 579
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
36-310 |
3.10e-05 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 48.84 E-value: 3.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 36 TAPAASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDA---DDNQSRDKAASTPADpVDAEEPAEEPTPNE 112
Cdd:TIGR00927 641 TGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAerkGEQEGEGEIEAKEAD-HKGETEAEEVEHEG 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 113 --EPQGGEDEQP-QTEAvrvdpQEEPEEAEEETDAlQATAEEVEAAAAEADAVDGGPASPEAMDVDEGEVdaegeaeqea 189
Cdd:TIGR00927 720 etEAEGTEDEGEiETGE-----EGEEVEDEGEGEA-EGKHEVETEGDRKETEHEGETEAEGKEDEDEGEI---------- 783
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 190 eddaaldrEATDDVDMQsvgadshqaedaeppeGRDEVDTSLEEQENGQDPDEREKDAAADEDDPDAEGDAESEQVDENA 269
Cdd:TIGR00927 784 --------QAGEDGEMK----------------GDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNA 839
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 24650584 270 EETGEAEHGDDTVENVLEPEESDvcliPDDQETEVTEAEKE 310
Cdd:TIGR00927 840 ENQGEAKQDEKGVDGGGGSDGGD----SEEEEEEEEEEEEE 876
|
|
| zf-FCS |
pfam06467 |
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ... |
709-747 |
8.49e-05 |
|
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.
Pssm-ID: 428958 Cd Length: 40 Bit Score: 41.20 E-value: 8.49e-05
10 20 30
....*....|....*....|....*....|....*....
gi 24650584 709 KTCSCCQKDISGGQEGflAPVGDKDQFKDFCSQSCLRRY 747
Cdd:pfam06467 4 ATCWFCKKLIKNKPTV--IVLQNDGSVGQFCSQSCLDSY 40
|
|
| TRASH |
smart00746 |
metallochaperone-like domain; |
711-750 |
1.31e-03 |
|
metallochaperone-like domain;
Pssm-ID: 214799 Cd Length: 39 Bit Score: 38.13 E-value: 1.31e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 24650584 711 CSCCQKDISGGQEGFLAPVGDKDqfKDFCSQSCLRRYESM 750
Cdd:smart00746 1 CSFCGKDIYNPGTGIMVVNDGKV--YYFCSSKCLSKFKKK 38
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
37-126 |
2.19e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.67 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 37 APAASETLDTPASPPAEDAAAQ-ESKPPPSKEADDDfeqisegslDADDNQSRDKAASTPADPVDAEEPAEEPTPNEEPQ 115
Cdd:PRK07764 413 AAAAPAAAAAPAPAAAPQPAPApAPAPAPPSPAGNA---------PAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPA 483
|
90
....*....|.
gi 24650584 116 GGEDEQPQTEA 126
Cdd:PRK07764 484 PPAAPAPAAAP 494
|
|
| TRASH |
smart00746 |
metallochaperone-like domain; |
669-706 |
2.91e-03 |
|
metallochaperone-like domain;
Pssm-ID: 214799 Cd Length: 39 Bit Score: 36.97 E-value: 2.91e-03
10 20 30
....*....|....*....|....*....|....*...
gi 24650584 669 CETCKQEVSSIAlGKYCVRFGFDVRQFCCAGCLNTFKK 706
Cdd:smart00746 1 CSFCGKDIYNPG-TGIMVVNDGKVYYFCSSKCLSKFKK 37
|
|
| DUF4775 |
pfam16001 |
Domain of unknown function (DUF4775); This family of proteins is functionally uncharacterized. ... |
16-144 |
4.21e-03 |
|
Domain of unknown function (DUF4775); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 308 and 484 amino acids in length.
Pssm-ID: 406411 [Multi-domain] Cd Length: 456 Bit Score: 41.65 E-value: 4.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 16 ARPESATPRSEEQQDQDrqqtAPAASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDADDNQSRDKA---- 91
Cdd:pfam16001 188 DKPETEEPEEKEKTPEE----VAKAEEPPKTSENGAATDTPAAVPESESAMEVDEEEKLQENTPQATADAPSDDKAvpdi 263
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24650584 92 ---------ASTPADPVDAEEPAEEPTPneEP-------QGGEDEQ----PQTEAVRVDPQEEPEEAEEETDA 144
Cdd:pfam16001 264 kveekvaavSESSEEPKETSEPAKEPTP--EPmevdsssKGSSDTAqvdtPVKEVVPAAPATESAVAAESTEA 334
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DUF3504 |
pfam12012 |
Domain of unknown function (DUF3504); This presumed domain is functionally uncharacterized. ... |
1516-1677 |
1.35e-87 |
|
Domain of unknown function (DUF3504); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 156 to 173 amino acids in length.
Pssm-ID: 463430 Cd Length: 162 Bit Score: 282.23 E-value: 1.35e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 1516 IVTRVEEEHLWECKQLGAHSPHVLLSTLMFFNTKHFNLTTVEEHMQLSFSHIMKHWKrssqnsKVPGSRNVLLRFYPPQA 1595
Cdd:pfam12012 1 VFSRVEEEHLWECKQLGAHSPIVLLNTLVYFNTKYFNLRTVEEHRRLSFSNVVRHTK------PNPREKSTYLRYYEPPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 1596 GLDANPRKK------KVYEQQENEENPLRCPVRLYEFYLSKCPESVKTRNDVFYLQPERSCVPDSPVWYSTQALGQDALQ 1669
Cdd:pfam12012 75 QVETGGRKKrdegvnKVVEQHENSENPLRCPVKLYEFYLSKCPESVKQRKDVFYLQPEPSCVPDSPLWYSSQPLGRNTLE 154
|
....*...
gi 24650584 1670 RMLHRVKM 1677
Cdd:pfam12012 155 SMLTRILL 162
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
41-308 |
5.53e-06 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 51.55 E-value: 5.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 41 SETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDADDNQSRDKAAST------PADPVDAEEPAEEPTPNEEP 114
Cdd:COG5271 317 GAAEDTEIATADELAAADDEDDDDSAAEDAAEEAATAEDSAAEDTQDAEDEAAGeaadesEGADTDAAADEADAAADDSA 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 115 QGGEDEQPQTEAVRVDPQEEPeeaeEETDALQATAEEVEAAAAEADAVDGGPA-SPEAMDVDEGEVDAEGEAEQEAEDDA 193
Cdd:COG5271 397 DDEEASADGGTSPTSDTDEEE----EEADEDASAGETEDESTDVTSAEDDIATdEEADSLADEEEEAEAELDTEEDTESA 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 194 ALDR---EATDDVDMQSVGADSHQAEDAEPPEGRDEVDTSLEEQENGQDPDEREKDAaadeddpdaegDAESEQVDENAE 270
Cdd:COG5271 473 EEDAdgdEATDEDDASDDGDEEEAEEDAEAEADSDELTAEETSADDGADTDAAADPE-----------DSDEDALEDETE 541
|
250 260 270
....*....|....*....|....*....|....*...
gi 24650584 271 ETGEAEHGDDTVENVLEPEESDVCLIPDDQETEVTEAE 308
Cdd:COG5271 542 GEENAPGSDQDADETDEPEATAEEDEPDEAEAETEDAT 579
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
8-405 |
1.67e-05 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 50.01 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 8 DSFGADSNARPESATPRseeqqdqdRQQTAPAASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDADDNQS 87
Cdd:COG5271 512 EETSADDGADTDAAADP--------EDSDEDALEDETEGEENAPGSDQDADETDEPEATAEEDEPDEAEAETEDATENAD 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 88 RDKAASTPADPVDAEEPAEEPTPNEEPqggEDEQPQTEAvrvdpqeepeeaEEETDALQATAEEVEAAAAEADAVDGGPA 167
Cdd:COG5271 584 ADETEESADESEEAEASEDEAAEEEEA---DDDEADADA------------DGAADEEETEEEAAEDEAAEPETDASEAA 648
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 168 SPEAMDVDEGEV--DAEGEAEQEAEDDAALDREATDDVDMQSVGADSHQAEDAEPPEGRDEVDTSLEEQENGQD-PDERE 244
Cdd:COG5271 649 DEDADAETEAEAsaDESEEEAEDESETSSEDAEEDADAAAAEASDDEEETEEADEDAETASEEADAEEADTEADgTAEEA 728
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 245 KDAAADEDDPDAEGDAESEQVDENAE--ETGEAEHGD-DTVENVLEPEESDVCLIPDDQETEVTEAEKELAR-ENAEKAA 320
Cdd:COG5271 729 EEAAEEAESADEEAASLPDEADAEEEaeEAEEAEEDDaDGLEEALEEEKADAEEAATDEEAEAAAEEKEKVAdEDQDTDE 808
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 321 EEEEAEERQAKTPDNDRKSPADAAADPEDDSAAAVDATDVSPTTPTADGVAAAANEEEAGGDVPDPDEPTAEESSSAGAG 400
Cdd:COG5271 809 DALLDEAEADEEEDLDGEDEETADEALEDIEAGIAEDDEEDDDAAAAKDVDADLDLDADLAADEHEAEEAQEAETDADAD 888
|
....*
gi 24650584 401 EPGST 405
Cdd:COG5271 889 ADAGE 893
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
36-310 |
3.10e-05 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 48.84 E-value: 3.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 36 TAPAASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDA---DDNQSRDKAASTPADpVDAEEPAEEPTPNE 112
Cdd:TIGR00927 641 TGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAerkGEQEGEGEIEAKEAD-HKGETEAEEVEHEG 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 113 --EPQGGEDEQP-QTEAvrvdpQEEPEEAEEETDAlQATAEEVEAAAAEADAVDGGPASPEAMDVDEGEVdaegeaeqea 189
Cdd:TIGR00927 720 etEAEGTEDEGEiETGE-----EGEEVEDEGEGEA-EGKHEVETEGDRKETEHEGETEAEGKEDEDEGEI---------- 783
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 190 eddaaldrEATDDVDMQsvgadshqaedaeppeGRDEVDTSLEEQENGQDPDEREKDAAADEDDPDAEGDAESEQVDENA 269
Cdd:TIGR00927 784 --------QAGEDGEMK----------------GDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNA 839
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 24650584 270 EETGEAEHGDDTVENVLEPEESDvcliPDDQETEVTEAEKE 310
Cdd:TIGR00927 840 ENQGEAKQDEKGVDGGGGSDGGD----SEEEEEEEEEEEEE 876
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
8-405 |
3.74e-05 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 48.86 E-value: 3.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 8 DSFGADSNARPESATPRSEEQQDQDRQQTAPAASETLDTP--ASPPAEDAAAQESKPPP---SKEADDDFEQISEG---- 78
Cdd:COG5271 587 TEESADESEEAEASEDEAAEEEEADDDEADADADGAADEEetEEEAAEDEAAEPETDASeaaDEDADAETEAEASAdese 666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 79 SLDADDNQSRDKAASTPADPVDAEEPAEEPTPNEEPQGGEDEQPQTEAVRVDPQeEPEEAEEETDALQATAEEVEAAAAE 158
Cdd:COG5271 667 EEAEDESETSSEDAEEDADAAAAEASDDEEETEEADEDAETASEEADAEEADTE-ADGTAEEAEEAAEEAESADEEAASL 745
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 159 ADAVDGGPASPEAMDVDEGEVDaegEAEQEAEDDAALDREATDDVDMQSVGADSHQAEDAEPPEGRDEVDTSLEEQENGQ 238
Cdd:COG5271 746 PDEADAEEEAEEAEEAEEDDAD---GLEEALEEEKADAEEAATDEEAEAAAEEKEKVADEDQDTDEDALLDEAEADEEED 822
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 239 DPDEREkdaaadeddpdaegdaeseqvdENAEETGEAEHGDDTVENVLEPEESDVCLIPDDQETEVTEAEKELARENAEK 318
Cdd:COG5271 823 LDGEDE----------------------ETADEALEDIEAGIAEDDEEDDDAAAAKDVDADLDLDADLAADEHEAEEAQE 880
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 319 AAEEEEAEERQAKTPDNDRKSPADAAADPEDDSAAAVDATDVSP----TTPTADGVAAAANEEEAGGDVPDPDEPTAEES 394
Cdd:COG5271 881 AETDADADADAGEADSSGESSAAAEDDDAAEDADSDDGANDEDDdddaEEERKDAEEDELGAAEDDLDALALDEAGDEES 960
|
410
....*....|.
gi 24650584 395 SSAGAGEPGST 405
Cdd:COG5271 961 DDAAADDAGDD 971
|
|
| zf-FCS |
pfam06467 |
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ... |
709-747 |
8.49e-05 |
|
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.
Pssm-ID: 428958 Cd Length: 40 Bit Score: 41.20 E-value: 8.49e-05
10 20 30
....*....|....*....|....*....|....*....
gi 24650584 709 KTCSCCQKDISGGQEGflAPVGDKDQFKDFCSQSCLRRY 747
Cdd:pfam06467 4 ATCWFCKKLIKNKPTV--IVLQNDGSVGQFCSQSCLDSY 40
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
39-401 |
1.52e-04 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 46.55 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 39 AASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDADDNQSRDKAASTPADPVDAEEPAEEPTPNEEPQGGE 118
Cdd:COG5271 342 AAEDAAEEAATAEDSAAEDTQDAEDEAAGEAADESEGADTDAAADEADAAADDSADDEEASADGGTSPTSDTDEEEEEAD 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 119 DEQPQTEAVRVDPQEEPEEAEEETDALQATAEEVEAAAAEADAVDGGPASPEA-MDVDE--GEVDAEGEAEQEAEDDAAL 195
Cdd:COG5271 422 EDASAGETEDESTDVTSAEDDIATDEEADSLADEEEEAEAELDTEEDTESAEEdADGDEatDEDDASDDGDEEEAEEDAE 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 196 DREATDDVDMQSVGADSHQAEDAEPPEGRDEVDTSLEEQENG-------------QDPDEREKDAAADEDDPDAEGDAES 262
Cdd:COG5271 502 AEADSDELTAEETSADDGADTDAAADPEDSDEDALEDETEGEenapgsdqdadetDEPEATAEEDEPDEAEAETEDATEN 581
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 263 EQVDENAEETGEAEHGDDTVENVLEPEESDvcliPDDQETEVTEAEKELARENAEKAAEEEEAEERQAKTPDNDRKSPAD 342
Cdd:COG5271 582 ADADETEESADESEEAEASEDEAAEEEEAD----DDEADADADGAADEEETEEEAAEDEAAEPETDASEAADEDADAETE 657
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 24650584 343 AAADPEDDSAAAVDATDVSPTTPTADGVAAAANEEEAGGDVPDPDEPTAEESSSAGAGE 401
Cdd:COG5271 658 AEASADESEEEAEDESETSSEDAEEDADAAAAEASDDEEETEEADEDAETASEEADAEE 716
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
7-310 |
9.51e-04 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 44.24 E-value: 9.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 7 LDSFGADSNARPESATPRSEEQQDQDRQQTAPAASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDADDNQ 86
Cdd:COG5271 246 ETLLADDDDTESAGATAEVGGTPDTDDEATDDADGLEAAEDDALDAELTAAQAADPESDDDADDSTLAALEGAAEDTEIA 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 87 SRDKAASTPADPVD--AEEPAEEPTPNEEPQGGEDEQPQTEAVRVDPQEEPEEAEEETDALQATAEEVEAAAAEADAVDG 164
Cdd:COG5271 326 TADELAAADDEDDDdsAAEDAAEEAATAEDSAAEDTQDAEDEAAGEAADESEGADTDAAADEADAAADDSADDEEASADG 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 165 GPASPEAMDVDEGEVDAEGEAEQEaeDDAALDREATDDVDmqsvgadshqAEDAEPPEGRDEVDTSLEEQENGQDPDERE 244
Cdd:COG5271 406 GTSPTSDTDEEEEEADEDASAGET--EDESTDVTSAEDDI----------ATDEEADSLADEEEEAEAELDTEEDTESAE 473
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 245 KDAAADEDDPDAegDAESEQVDENAEETGEAEHGDDTVENVL----EPEESDVCLIPDDQETEVTEAEKE 310
Cdd:COG5271 474 EDADGDEATDED--DASDDGDEEEAEEDAEAEADSDELTAEEtsadDGADTDAAADPEDSDEDALEDETE 541
|
|
| TRASH |
smart00746 |
metallochaperone-like domain; |
711-750 |
1.31e-03 |
|
metallochaperone-like domain;
Pssm-ID: 214799 Cd Length: 39 Bit Score: 38.13 E-value: 1.31e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 24650584 711 CSCCQKDISGGQEGFLAPVGDKDqfKDFCSQSCLRRYESM 750
Cdd:smart00746 1 CSFCGKDIYNPGTGIMVVNDGKV--YYFCSSKCLSKFKKK 38
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
67-405 |
2.00e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 43.08 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 67 EADDDFEQISEGSLDADDNQSRDKAAST-PADPVDAEEPAEEPTPNEEPQGGEDEQPQTEAVRVDPQEEPEEAEEETDAL 145
Cdd:COG5271 162 NDEAAADEGDELAADGDDTLAVADAIEAtPGGTDAVELTATLGATVTTDPGDSVAADDDLAAEEGASAVVEEEDASEDAV 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 146 QATAEEVEAAAAEADAVDGGPASPEAMDVDEGEVDAEGEAEQEAEDDAALDREATDDVDMQSVGADSHQAEDAEPPEGRD 225
Cdd:COG5271 242 AAADETLLADDDDTESAGATAEVGGTPDTDDEATDDADGLEAAEDDALDAELTAAQAADPESDDDADDSTLAALEGAAED 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 226 EVDTSLEEQENGQDPDEREKDAAADEDDPDAEGDAESEQVDENAEETGEAEhgDDTVENVLEPEESDVCLIPDDQETEVT 305
Cdd:COG5271 322 TEIATADELAAADDEDDDDSAAEDAAEEAATAEDSAAEDTQDAEDEAAGEA--ADESEGADTDAAADEADAAADDSADDE 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 306 EAEKElarenaeKAAEEEEAEERQAKTPDNDRKSPADAAADPEDDSAAAVDATDvSPTTPTADGVAAAANEEEAGGDVPD 385
Cdd:COG5271 400 EASAD-------GGTSPTSDTDEEEEEADEDASAGETEDESTDVTSAEDDIATD-EEADSLADEEEEAEAELDTEEDTES 471
|
330 340
....*....|....*....|
gi 24650584 386 PDEPTAEESSSAGAGEPGST 405
Cdd:COG5271 472 AEEDADGDEATDEDDASDDG 491
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
37-126 |
2.19e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.67 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 37 APAASETLDTPASPPAEDAAAQ-ESKPPPSKEADDDfeqisegslDADDNQSRDKAASTPADPVDAEEPAEEPTPNEEPQ 115
Cdd:PRK07764 413 AAAAPAAAAAPAPAAAPQPAPApAPAPAPPSPAGNA---------PAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPA 483
|
90
....*....|.
gi 24650584 116 GGEDEQPQTEA 126
Cdd:PRK07764 484 PPAAPAPAAAP 494
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
9-130 |
2.28e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 42.91 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 9 SFGADSNARPESATPRSEEQQDQDRQQTAPAAS--ETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDAddnq 86
Cdd:PRK07003 403 TGAAGAALAPKAAAAAAATRAEAPPAAPAPPATadRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSAS---- 478
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 24650584 87 srDKAASTPADPVDAEEPAEEPTPNEEPQGGEDEQPQTEAVRVD 130
Cdd:PRK07003 479 --APASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASRED 520
|
|
| TRASH |
smart00746 |
metallochaperone-like domain; |
669-706 |
2.91e-03 |
|
metallochaperone-like domain;
Pssm-ID: 214799 Cd Length: 39 Bit Score: 36.97 E-value: 2.91e-03
10 20 30
....*....|....*....|....*....|....*...
gi 24650584 669 CETCKQEVSSIAlGKYCVRFGFDVRQFCCAGCLNTFKK 706
Cdd:smart00746 1 CSFCGKDIYNPG-TGIMVVNDGKVYYFCSSKCLSKFKK 37
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
37-311 |
3.71e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 42.31 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 37 APAASETLDTPASPPAEDAAAQESKPPPSKEADDDfEQISEGSLDADDNQSRDKAASTPADPVDAEEPAEEPTPNEEPQG 116
Cdd:COG5271 705 AETASEEADAEEADTEADGTAEEAEEAAEEAESAD-EEAASLPDEADAEEEAEEAEEAEEDDADGLEEALEEEKADAEEA 783
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 117 GEDEQPQTEAVRVDPQEEPEEAEEETDALQATAEEVEAAAAEADAVDGGPASPEAMDVDEGEVDAEGEAEQEAEDDAALD 196
Cdd:COG5271 784 ATDEEAEAAAEEKEKVADEDQDTDEDALLDEAEADEEEDLDGEDEETADEALEDIEAGIAEDDEEDDDAAAAKDVDADLD 863
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 197 REATDDVDMQSVGADSHQAEDAEPPEGRDEVDTSLEEQENGQDPDEREKDAAADEDDPDAEGDAESEQVDENAE-ETGEA 275
Cdd:COG5271 864 LDADLAADEHEAEEAQEAETDADADADAGEADSSGESSAAAEDDDAAEDADSDDGANDEDDDDDAEEERKDAEEdELGAA 943
|
250 260 270
....*....|....*....|....*....|....*.
gi 24650584 276 EHGDDTVENVLEPEESDVCLIPDDQETEVTEAEKEL 311
Cdd:COG5271 944 EDDLDALALDEAGDEESDDAAADDAGDDSLADDDEA 979
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
3-226 |
3.87e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 42.00 E-value: 3.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 3 EISSLDSFGADSNARPESAT---PRSEEQQDQDRQQTAPAASETldtPASPPAEDAAAQESKPPPSKEADDDFEQISEGS 79
Cdd:PRK08691 373 ENTELQSPSAQTAEKETAAKkpqPRPEAETAQTPVQTASAAAMP---SEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGT 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 80 ldaddnqsrdkaASTPADPVDAEEPAEEPTPNEEPQGGEDEQPQTEAVRVDPQEEPEEAEEETDALQaTAEEVEAAAAEA 159
Cdd:PRK08691 450 ------------AQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVE-TETFAHEAPAEP 516
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24650584 160 DAVDGGPASPEAMDvDEGEVDAEGEAEQEAEDDAalDREATDDVDMQSVGADShqAEDAEPPEGRDE 226
Cdd:PRK08691 517 FYGYGFPDNDCPPE-DGAEIPPPDWEHAAPADTA--GGGADEEAEAGGIGGNN--TPSAPPPEFSTE 578
|
|
| DUF4775 |
pfam16001 |
Domain of unknown function (DUF4775); This family of proteins is functionally uncharacterized. ... |
16-144 |
4.21e-03 |
|
Domain of unknown function (DUF4775); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 308 and 484 amino acids in length.
Pssm-ID: 406411 [Multi-domain] Cd Length: 456 Bit Score: 41.65 E-value: 4.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 16 ARPESATPRSEEQQDQDrqqtAPAASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDADDNQSRDKA---- 91
Cdd:pfam16001 188 DKPETEEPEEKEKTPEE----VAKAEEPPKTSENGAATDTPAAVPESESAMEVDEEEKLQENTPQATADAPSDDKAvpdi 263
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24650584 92 ---------ASTPADPVDAEEPAEEPTPneEP-------QGGEDEQ----PQTEAVRVDPQEEPEEAEEETDA 144
Cdd:pfam16001 264 kveekvaavSESSEEPKETSEPAKEPTP--EPmevdsssKGSSDTAqvdtPVKEVVPAAPATESAVAAESTEA 334
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
38-116 |
4.23e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 41.49 E-value: 4.23e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24650584 38 PAASETLDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSLDADDNQSRDKAASTpadpvdaEEPAEEPTPNEEPQG 116
Cdd:PHA03169 178 PEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHE-------DEPTEPEREGPPFPG 249
|
|
| TFIIF_alpha |
pfam05793 |
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation ... |
173-278 |
5.29e-03 |
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II.
Pssm-ID: 310411 [Multi-domain] Cd Length: 528 Bit Score: 41.47 E-value: 5.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 173 DVDEGEVDAEGEAEQEAEDDAALDREATDDVDMQSVGADsHQAEDAEPPEGRD---EVDTSLEEQENGQDPDEREKDAAA 249
Cdd:pfam05793 227 ESDKGGEDGDEEKKKKKKKKLAKNKKKLDDDKKKKRGGD-DDAFEYDSDDGDDegrEEDYISDSSASGNDPEEREDKLSP 305
|
90 100
....*....|....*....|....*....
gi 24650584 250 DEDDPDAEGDAESEqvDENAEETGEAEHG 278
Cdd:pfam05793 306 EEPAKGEIEQSDDS--EESEEEKNEEEGK 332
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
37-126 |
8.72e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 40.34 E-value: 8.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 37 APAASETLDTPASPPAEDaaaQESKPPPSKEADDDFEQISEGSLDADDNQSRDkaastPADPVDAEEPAEEPTPNEEPQG 116
Cdd:PHA03169 127 SPESPASHSPPPSPPSHP---GPHEPAPPESHNPSPNQQPSSFLQPSHEDSPE-----EPEPPTSEPEPDSPGPPQSETP 198
|
90
....*....|
gi 24650584 117 GEDEQPQTEA 126
Cdd:PHA03169 199 TSSPPPQSPP 208
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
2-310 |
9.00e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 40.77 E-value: 9.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 2 EEISSLDSFGADSNARPESATPRSEEQQDQDRQQTAPAASET-LDTPASPPAEDAAAQESKPPPSKEADDDFEQISEGSL 80
Cdd:COG5271 435 DVTSAEDDIATDEEADSLADEEEEAEAELDTEEDTESAEEDAdGDEATDEDDASDDGDEEEAEEDAEAEADSDELTAEET 514
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 81 DADDNQSRDKAAstpaDPVDAEEPAEEPTPNEEPQGGEDEQPQTEAvrvdPQEEPEEAEEETDALQATAeeveaaaaead 160
Cdd:COG5271 515 SADDGADTDAAA----DPEDSDEDALEDETEGEENAPGSDQDADET----DEPEATAEEDEPDEAEAET----------- 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24650584 161 avdggPASPEAMDVDEGEVdaegEAEQEAEDDAALDREATDDvdmQSVGADSHQAEDAEPPEGRDEVDTSL-EEQENGQD 239
Cdd:COG5271 576 -----EDATENADADETEE----SADESEEAEASEDEAAEEE---EADDDEADADADGAADEEETEEEAAEdEAAEPETD 643
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24650584 240 PDEREKDAAADEDDPDAEGDAESEQVDENAEETGE-AEHGDDTVENVLEPEESDVCLIPDDQETEVTEAEKE 310
Cdd:COG5271 644 ASEAADEDADAETEAEASADESEEEAEDESETSSEdAEEDADAAAAEASDDEEETEEADEDAETASEEADAE 715
|
|
| |
