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Conserved domains on  [gi|28571728|ref|NP_524363|]
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mitochondrial ribosomal protein L9 [Drosophila melanogaster]

Protein Classification

bL9 family ribosomal protein( domain architecture ID 10472659)

bL9 family ribosomal protein such as Mus musculus 39S ribosomal protein L9 which is a component of the mitochondrial ribosome large subunit (39S)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L9_N pfam01281
Ribosomal protein L9, N-terminal domain;
68-114 7.63e-11

Ribosomal protein L9, N-terminal domain;


:

Pssm-ID: 460146  Cd Length: 47  Bit Score: 55.84  E-value: 7.63e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 28571728    68 IEVVLKTFVEGVGDKGDVVSMKPHFVYNKLLLPGLAAYNTPENVAKY 114
Cdd:pfam01281   1 MKVILLEDVKGLGKKGDVVEVKDGYARNFLIPRGLAVYATPENLKEL 47
 
Name Accession Description Interval E-value
Ribosomal_L9_N pfam01281
Ribosomal protein L9, N-terminal domain;
68-114 7.63e-11

Ribosomal protein L9, N-terminal domain;


Pssm-ID: 460146  Cd Length: 47  Bit Score: 55.84  E-value: 7.63e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 28571728    68 IEVVLKTFVEGVGDKGDVVSMKPHFVYNKLLLPGLAAYNTPENVAKY 114
Cdd:pfam01281   1 MKVILLEDVKGLGKKGDVVEVKDGYARNFLIPRGLAVYATPENLKEL 47
RplI COG0359
Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 ...
 69-121 4.17e-04

Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440128  Cd Length: 147  Bit Score: 39.62  E-value: 4.17e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 28571728  69 EVVLKTFVEGVGDKGDVVSMKPHFVYNkLLLP-GLAAYNTPENVAKYAKTEAEK 121
Cdd:COG0359   2 KVILLEDVKGLGKKGDVVEVKDGYARN-YLIPqGLAVEATKGNLKQLEARRAAL 54
L9 TIGR00158
ribosomal protein L9; Ribosomal protein L9 appears to be universal in, but restricted to, ...
 68-121 2.10e-03

ribosomal protein L9; Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129262  Cd Length: 148  Bit Score: 37.37  E-value: 2.10e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28571728    68 IEVVLKTFVEGVGDKGDVVSMKPHFVYNKLLLPGLAAYNTPENVAKY--------AKTEAEK 121
Cdd:TIGR00158   1 MKVILLEDVANLGKRGDVVEVKDGYARNFLIPKGLAVPATKKNIEFFearrkkleEKLAANK 62
 
Name Accession Description Interval E-value
Ribosomal_L9_N pfam01281
Ribosomal protein L9, N-terminal domain;
68-114 7.63e-11

Ribosomal protein L9, N-terminal domain;


Pssm-ID: 460146  Cd Length: 47  Bit Score: 55.84  E-value: 7.63e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 28571728    68 IEVVLKTFVEGVGDKGDVVSMKPHFVYNKLLLPGLAAYNTPENVAKY 114
Cdd:pfam01281   1 MKVILLEDVKGLGKKGDVVEVKDGYARNFLIPRGLAVYATPENLKEL 47
RplI COG0359
Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 ...
 69-121 4.17e-04

Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440128  Cd Length: 147  Bit Score: 39.62  E-value: 4.17e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 28571728  69 EVVLKTFVEGVGDKGDVVSMKPHFVYNkLLLP-GLAAYNTPENVAKYAKTEAEK 121
Cdd:COG0359   2 KVILLEDVKGLGKKGDVVEVKDGYARN-YLIPqGLAVEATKGNLKQLEARRAAL 54
L9 TIGR00158
ribosomal protein L9; Ribosomal protein L9 appears to be universal in, but restricted to, ...
 68-121 2.10e-03

ribosomal protein L9; Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129262  Cd Length: 148  Bit Score: 37.37  E-value: 2.10e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28571728    68 IEVVLKTFVEGVGDKGDVVSMKPHFVYNKLLLPGLAAYNTPENVAKY--------AKTEAEK 121
Cdd:TIGR00158   1 MKVILLEDVANLGKRGDVVEVKDGYARNFLIPKGLAVPATKKNIEFFearrkkleEKLAANK 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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