NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|17647897|ref|NP_523382|]
View 

ribosomal protein S5a, isoform A [Drosophila melanogaster]

Protein Classification

40S ribosomal protein S5( domain architecture ID 10201903)

40S ribosomal protein S5

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 42-228 2.49e-138

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


:

Pssm-ID: 271246  Cd Length: 185  Bit Score: 384.98  E-value: 2.49e-138
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897  42 KLFGRWSCDDVTVNDISLQDYISVKekFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSF 121
Cdd:cd14867   1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897 122 EIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADEL 201
Cdd:cd14867  79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                       170       180
                ....*....|....*....|....*..
gi 17647897 202 INAAKGSSNSYAIKKKDELERVAKSNR 228
Cdd:cd14867 159 INAAKGSSNSYAIKKKDELERVAKSNR 185
 
Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 42-228 2.49e-138

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 384.98  E-value: 2.49e-138
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897  42 KLFGRWSCDDVTVNDISLQDYISVKekFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSF 121
Cdd:cd14867   1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897 122 EIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADEL 201
Cdd:cd14867  79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                       170       180
                ....*....|....*....|....*..
gi 17647897 202 INAAKGSSNSYAIKKKDELERVAKSNR 228
Cdd:cd14867 159 INAAKGSSNSYAIKKKDELERVAKSNR 185
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 40-228 1.91e-125

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 352.92  E-value: 1.91e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897   40 EIKLFGRWSCDDVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKH 119
Cdd:PTZ00091   5 EPKLFGKWSYDDVQVSDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIVKH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897  120 SFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLAD 199
Cdd:PTZ00091  85 AFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECLAD 164

                        170       180
                 ....*....|....*....|....*....
gi 17647897  200 ELINAAKGSSNSYAIKKKDELERVAKSNR 228
Cdd:PTZ00091 165 EIINASKESSNSYAIKKKDEVERVAKANR 193
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 40-228 4.11e-107

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 306.31  E-value: 4.11e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897    40 EIKLFGRWSCDDVTVNDISLQDYISVKEKfarYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKH 119
Cdd:TIGR01028   1 EIKVFGKWSTEEVEVKDPSLKDYINLEPI---YVPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897   120 SFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLAD 199
Cdd:TIGR01028  78 AFEIIEKRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYRQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLAE 157

                         170       180
                  ....*....|....*....|....*....
gi 17647897   200 ELINAAKGSSNSYAIKKKDELERVAKSNR 228
Cdd:TIGR01028 158 EIILAANGDSKSYAIKKKEELERVAKSAR 186
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 88-228 7.84e-58

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 179.11  E-value: 7.84e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897    88 AQCPIVERLTCSLMMkgrnNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSP 167
Cdd:pfam00177   1 YNSPLVEKLINRLMR----DGKKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRP 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17647897   168 LRRVNQAIWLLCTGAReaaFRNIKTIAECLADELINAAKGSsnSYAIKKKDELERVAKSNR 228
Cdd:pfam00177  77 ERRVALALRWIIEAAR---KRSEKSMAERLANELIDAANGR--GAAVKKKEETHRMAEANR 132
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 87-228 1.68e-17

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 76.25  E-value: 1.68e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897  87 KAQCPIVERLTCSLMMkgrnNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPR-E-DSTRIGraGTVRRQAVD 164
Cdd:COG0049  17 KYNSVLVTKFINKIML----DGKKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLvEvKSRRVG--GATYQVPVE 90

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17647897 165 VSPLRRVNQAI-WLLcTGAREaafRNIKTIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 228
Cdd:COG0049  91 VRPERRQALAMrWII-DAARK---RKEKTMAERLANELLDASNNRGA--AVKKREDTHKMAEANK 149
 
Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 42-228 2.49e-138

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 384.98  E-value: 2.49e-138
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897  42 KLFGRWSCDDVTVNDISLQDYISVKekFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSF 121
Cdd:cd14867   1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897 122 EIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADEL 201
Cdd:cd14867  79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                       170       180
                ....*....|....*....|....*..
gi 17647897 202 INAAKGSSNSYAIKKKDELERVAKSNR 228
Cdd:cd14867 159 INAAKGSSNSYAIKKKDELERVAKSNR 185
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 40-228 1.91e-125

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 352.92  E-value: 1.91e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897   40 EIKLFGRWSCDDVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKH 119
Cdd:PTZ00091   5 EPKLFGKWSYDDVQVSDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIVKH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897  120 SFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLAD 199
Cdd:PTZ00091  85 AFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECLAD 164

                        170       180
                 ....*....|....*....|....*....
gi 17647897  200 ELINAAKGSSNSYAIKKKDELERVAKSNR 228
Cdd:PTZ00091 165 EIINASKESSNSYAIKKKDEVERVAKANR 193
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 40-228 4.11e-107

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 306.31  E-value: 4.11e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897    40 EIKLFGRWSCDDVTVNDISLQDYISVKEKfarYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKH 119
Cdd:TIGR01028   1 EIKVFGKWSTEEVEVKDPSLKDYINLEPI---YVPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897   120 SFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLAD 199
Cdd:TIGR01028  78 AFEIIEKRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYRQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLAE 157

                         170       180
                  ....*....|....*....|....*....
gi 17647897   200 ELINAAKGSSNSYAIKKKDELERVAKSNR 228
Cdd:TIGR01028 158 EIILAANGDSKSYAIKKKEELERVAKSAR 186
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 33-228 8.19e-92

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 267.92  E-value: 8.19e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897   33 VSTTELPEIKLFGRWSCDDVTVNDISLQDYISVKEkfaRYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLM 112
Cdd:PRK04027   3 SEEAEPMEIKLFGKWDVEEVEVRDPSLKRYINLTP---VLVPHTGGRHAKKQFGKAEVPIVERLINKLMRTERNTGKKQK 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897  113 ACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKT 192
Cdd:PRK04027  80 AYNIVKEAFEIIEKRTKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVDLALRFIAEGARQASFKNKKS 159

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 17647897  193 IAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228
Cdd:PRK04027 160 IEEALAEEIIAAANNDPKSYAVRKKEEIERVAKSAR 195
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 88-228 7.84e-58

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 179.11  E-value: 7.84e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897    88 AQCPIVERLTCSLMMkgrnNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSP 167
Cdd:pfam00177   1 YNSPLVEKLINRLMR----DGKKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRP 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17647897   168 LRRVNQAIWLLCTGAReaaFRNIKTIAECLADELINAAKGSsnSYAIKKKDELERVAKSNR 228
Cdd:pfam00177  77 ERRVALALRWIIEAAR---KRSEKSMAERLANELIDAANGR--GAAVKKKEETHRMAEANR 132
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 87-228 1.86e-23

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 91.36  E-value: 1.86e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897  87 KAQCPIVERLTCSLMMkgrnNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPRED--STRIGraGTVRRQAVD 164
Cdd:cd14869   6 KYNSVLVSKFINKLMK----DGKKSVAEKIVYDALEIIKKKTGKDPLEVFEKALENVKPLVEvrSRRVG--GATYQVPVE 79

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17647897 165 VSPLRRVNQAI-WLLcTGAREaafRNIKTIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 228
Cdd:cd14869  80 VRPERRQSLALrWII-EAARK---RKEKSMAEKLAAELLDAANNTGA--AVKKKEDTHKMAEANK 138
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 87-228 1.68e-17

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 76.25  E-value: 1.68e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897  87 KAQCPIVERLTCSLMMkgrnNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPR-E-DSTRIGraGTVRRQAVD 164
Cdd:COG0049  17 KYNSVLVTKFINKIML----DGKKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLvEvKSRRVG--GATYQVPVE 90

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17647897 165 VSPLRRVNQAI-WLLcTGAREaafRNIKTIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 228
Cdd:COG0049  91 VRPERRQALAMrWII-DAARK---RKEKTMAERLANELLDASNNRGA--AVKKREDTHKMAEANK 149
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 92-228 1.29e-16

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 73.99  E-value: 1.29e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897   92 IVERLTCSLMMkgrnNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPRED--STRIGraGTVRRQAVDVSPLR 169
Cdd:PRK05302  22 LVTKFINKLML----DGKKSVAEKIVYGALDIIEEKTGKDPLEVFEKALENVKPVVEvkSRRVG--GATYQVPVEVRPER 95

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897  170 RVNQAI-WLLcTGAREaafRNIKTIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 228
Cdd:PRK05302  96 RQALAMrWLV-EAARK---RGEKTMAERLANELLDAANNRGA--AVKKREDTHRMAEANK 149
rps7 CHL00053
ribosomal protein S7
 107-228 2.31e-16

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 73.38  E-value: 2.31e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897  107 NGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPRED--STRIGraGTVRRQAVDVSPLRRVNQAI-WLLcTGAR 183
Cdd:CHL00053  33 SGKKSLAYRIVYRALKKIQQKTEKNPLSVLRQAIRNVTPDVEvkARRVG--GSTYQVPIEIGSTRGKALAIrWLL-KASR 109

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 17647897  184 EAAFRNiktIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 228
Cdd:CHL00053 110 KRSGRN---MAFKLSSELVDAAKGSGN--AIRKKEETHRMAEANR 149
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 101-228 3.42e-16

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 72.69  E-value: 3.42e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897 101 MMKgrnNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPRED--STRIGraGTVRRQAVDVSPLRRVNQAI-WL 177
Cdd:cd14871  22 ILK---SGKKSLAYRIVYEALKEIKQKTKQDPLEVLEQAIRNVTPLVEvkARRVG--GSTYQVPVEVRSERGTALAIrWL 96

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 17647897 178 LcTGAREaafRNIKTIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 228
Cdd:cd14871  97 L-KASRK---RSGRSMASKLANEIIDAAKNTGN--AIRKKEETHRMAEANK 141
uS7_Mitochondria_Fungi cd14868
Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP) ...
 91-228 2.62e-14

Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Fungal and plants mitochondrial RPS7 shows less homology to the mammalian than to bacterial RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271247  Cd Length: 151  Bit Score: 67.60  E-value: 2.62e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897  91 PIVERLTcSLMMKgrnNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGP--REDSTRigRAGTVRRQAVdvsPL 168
Cdd:cd14868  23 PLLEQLT-NLIMK---HGKKAKAQRIVSRALLHIHTLTRADPLPLLRQAIDSAAPlvKIKSQK--KGAKNVQVPV---PL 93

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17647897 169 R---RVNQAI-WLLctgarEAA-FRNIKTIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 228
Cdd:cd14868  94 NerqRRRKAIkWIL-----EASdKRPGKSFSERLAEEIIAVVEGTSS--ALEKKEQVHKLAVANR 151
uS7_plant cd15484
plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part ...
 91-228 6.61e-12

plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271251  Cd Length: 147  Bit Score: 61.24  E-value: 6.61e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897  91 PIVERLTCSLMMKGrnngKKLMACRIVKHSFEII---HLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSP 167
Cdd:cd15484   2 LLIKKFVNFLMKKG----KKTKARTILFKTFHLLkqkQSAQTEDVLVILVTAVENVKPSFEVRKVRIAGTTQLIPAALSP 77

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17647897 168 LRRVNQAI-WLLcTGAREAAFRNIK---TIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 228
Cdd:cd15484  78 NKQETLAIrWIL-EAAKKKQRKQSKkrySFAYCLADEILDASKKQGK--ARQKRDELHKLAEANR 139
uS7_Mitochondria_Mammalian cd14870
Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein ...
 91-228 4.44e-10

Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. MRPS7 shows more homology to bacterial RPS7 than mitochondrial proteins from plants and fungi. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The ribosomes present in mammalian mitochondria have more proteins and low percentage of ribosomal RNA than bacterial ribosomes. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271249  Cd Length: 199  Bit Score: 57.25  E-value: 4.44e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647897  91 PIVERLTcSLMMKgrnNGKKLMACRIVKHSFEII--------HLLTGE-------NPLQILVSAIINSGPREDSTRIGRA 155
Cdd:cd14870  49 PLVSKFI-NMMMK---KGNKELAREIVEKTLENIkriqlekyHKATDEekesielNPLVIFHKAVENCKPLLGLTSVKRG 124

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17647897 156 GTVRRQAVDVSPLRRVNQAI-WLLcTGAREAAFRNikTIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 228
Cdd:cd14870 125 GKTYQVPVPITPNRARFLAMkWLI-EACREKKRKI--RFPEKLARELLDASNNQGK--VVKKKQELHKQCEANR 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH