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Conserved domains on  [gi|453232914|ref|NP_510852|]
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Aggrecan core protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
298-395 7.68e-08

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14950:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 585  Bit Score: 56.36  E-value: 7.68e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 298 TPKTAAsekqsVPPTPKSAAPSEVPPTPksaAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPP----TPKSAVPSEAPPTP 373
Cdd:PRK14950 361 VPVPAP-----QPAKPTAAAPSPVRPTP---APSTRPKAAAAANIPPKEPVRETATPPPVPPrpvaPPVPHTPESAPKLT 432

                         90       100
                 ....*....|....*....|....*...
gi 453232914 374 RSAAPSDV------PPTPKSNGHIANGS 395
Cdd:PRK14950 433 RAAIPVDEkpkytpPAPPKEEEKALIAD 460
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 261-459 9.49e-08

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.49  E-value: 9.49e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  261 APPEGKRPRTPNDLDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVP---PTP------------ 325
Cdd:PHA03247 2591 APPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPrddPAPgrvsrprrarrl 2670

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  326 --------------KSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEA----PPTPRSAAPSDVPPTPKS 387
Cdd:PHA03247 2671 graaqassppqrprRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAArqasPALPAAPAPPAVPAGPAT 2750

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 453232914  388 NGHIANGSIPGTPSVAQESAKATPAATPAATATPAATATPAATGTPKADTAFNFEETPATPRSSVPATPTES 459
Cdd:PHA03247 2751 PGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822
 
Name Accession Description Interval E-value
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 298-395 7.68e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 56.36  E-value: 7.68e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 298 TPKTAAsekqsVPPTPKSAAPSEVPPTPksaAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPP----TPKSAVPSEAPPTP 373
Cdd:PRK14950 361 VPVPAP-----QPAKPTAAAPSPVRPTP---APSTRPKAAAAANIPPKEPVRETATPPPVPPrpvaPPVPHTPESAPKLT 432

                         90       100
                 ....*....|....*....|....*...
gi 453232914 374 RSAAPSDV------PPTPKSNGHIANGS 395
Cdd:PRK14950 433 RAAIPVDEkpkytpPAPPKEEEKALIAD 460
PHA03247 PHA03247
large tegument protein UL36; Provisional
 261-459 9.49e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.49  E-value: 9.49e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  261 APPEGKRPRTPNDLDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVP---PTP------------ 325
Cdd:PHA03247 2591 APPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPrddPAPgrvsrprrarrl 2670

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  326 --------------KSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEA----PPTPRSAAPSDVPPTPKS 387
Cdd:PHA03247 2671 graaqassppqrprRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAArqasPALPAAPAPPAVPAGPAT 2750

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 453232914  388 NGHIANGSIPGTPSVAQESAKATPAATPAATATPAATATPAATGTPKADTAFNFEETPATPRSSVPATPTES 459
Cdd:PHA03247 2751 PGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 259-401 5.07e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 47.22  E-value: 5.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  259 LQAPPEGKRPRTPNDLDNPTadeePAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPK 338
Cdd:pfam05109 458 LTAPASTGPTVSTADVTSPT----PAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPN 533

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  339 SAAPSEVPLTPKSAAQSSVP-----------PTPKSAVPS---------EAPPTPRSAAPSDVPPTPKSNghIANGSIPG 398
Cdd:pfam05109 534 ATSPTLGKTSPTSAVTTPTPnatsptpavttPTPNATIPTlgktsptsaVTTPTPNATSPTVGETSPQAN--TTNHTLGG 611


                  ...
gi 453232914  399 TPS 401
Cdd:pfam05109 612 TSS 614
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 262-388 2.12e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 41.29  E-value: 2.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 262 PPEGKRPRTPNDLDnPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPksAAPSEVPPTPKSAA 341
Cdd:NF040712 200 ATVPRLAREPADAR-PEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGP--GAAPAAEPDEATRD 276

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 453232914 342 PSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKSN 388
Cdd:NF040712 277 AGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPK 323
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 254-394 4.91e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 40.77  E-value: 4.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 254 KQEFELqAPPEGKRPRTPNDLDNPTADEEpAAELEADAGSEVPPTPKTAASE-KQSVPPTPKSAAPSEVPPTPkSAAPSE 332
Cdd:NF033838 352 EAELEL-VKEEAKEPRNEEKIKQAKAKVE-SKKAEATRLEKIKTDRKKAEEEaKRKAAEEDKVKEKPAEQPQP-APAPQP 428

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 453232914 333 VPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSA------VPSEAPPTPRSAAPsdvPPTPKSNGHIANG 394
Cdd:NF033838 429 EKPAPKPEKPAEQPKAEKPADQQAEEDYARRSeeeynrLTQQQPPKTEKPAQ---PSTPKTGWKQENG 493
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 299-380 7.10e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.88  E-value: 7.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  299 PKTAASEKQSVPPTPKSAapsevpPTPKSAAPseVPPTPKSAAPsevpltPKSAAQSSVPPTPKSAVPSEAPPTPRSAAP 378
Cdd:TIGR00601  77 PKTGTGKVAPPAATPTSA------PTPTPSPP--ASPASGMSAA------PASAVEEKSPSEESATATAPESPSTSVPSS 142


                  ..
gi 453232914  379 SD 380
Cdd:TIGR00601 143 GS 144
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
316-387 7.56e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 40.37  E-value: 7.56e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 453232914 316 AAPSEVPPTPKSAAPsEVPPTPKSAAPSEVPlTPKSAAQSSVPPTPKSAVPsEAPPTPRSAAPSDVPPTPKS 387
Cdd:COG5373   38 AEAAEAASAPAEPEP-EAAAAATAAAPEAAP-APVPEAPAAPPAAAEAPAP-AAAAPPAEAEPAAAPAAASS 106
 
Name Accession Description Interval E-value
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 298-395 7.68e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 56.36  E-value: 7.68e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 298 TPKTAAsekqsVPPTPKSAAPSEVPPTPksaAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPP----TPKSAVPSEAPPTP 373
Cdd:PRK14950 361 VPVPAP-----QPAKPTAAAPSPVRPTP---APSTRPKAAAAANIPPKEPVRETATPPPVPPrpvaPPVPHTPESAPKLT 432

                         90       100
                 ....*....|....*....|....*...
gi 453232914 374 RSAAPSDV------PPTPKSNGHIANGS 395
Cdd:PRK14950 433 RAAIPVDEkpkytpPAPPKEEEKALIAD 460
PHA03247 PHA03247
large tegument protein UL36; Provisional
 261-459 9.49e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.49  E-value: 9.49e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  261 APPEGKRPRTPNDLDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVP---PTP------------ 325
Cdd:PHA03247 2591 APPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPrddPAPgrvsrprrarrl 2670

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  326 --------------KSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEA----PPTPRSAAPSDVPPTPKS 387
Cdd:PHA03247 2671 graaqassppqrprRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAArqasPALPAAPAPPAVPAGPAT 2750

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 453232914  388 NGHIANGSIPGTPSVAQESAKATPAATPAATATPAATATPAATGTPKADTAFNFEETPATPRSSVPATPTES 459
Cdd:PHA03247 2751 PGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
261-452 4.24e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 54.09  E-value: 4.24e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 261 APPEGKRPRTPNDLDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSA 340
Cdd:PRK07003 425 APPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATP 504

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 341 APSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSdvpptPKSNGHIANGSIPGTPSVAQESAKATPAATPAatat 420
Cdd:PRK07003 505 AAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPA-----ARAGGAAAALDVLRNAGMRVSSDRGARAAAAA---- 575

                        170       180       190
                 ....*....|....*....|....*....|..
gi 453232914 421 paatatpaatgtpKADTAFNFEETPATPRSSV 452
Cdd:PRK07003 576 -------------KPAAAPAAAPKPAAPRVAV 594
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 296-392 6.12e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 53.27  E-value: 6.12e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 296 PPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSaaqssvppTPKSAVPSEAPPTPRS 375
Cdd:PRK14950 363 VPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVA--------PPVPHTPESAPKLTRA 434

                         90       100
                 ....*....|....*....|..
gi 453232914 376 AAPSDV-----PPTPKSNGHIA 392
Cdd:PRK14950 435 AIPVDEkpkytPPAPPKEEEKA 456
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 257-353 7.46e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 53.36  E-value: 7.46e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  257 FELQAPPEGKRPRTPndlDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPT 336
Cdd:PRK12270   33 FADYGPGSTAAPTAA---AAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPA 109

                          90
                  ....*....|....*..
gi 453232914  337 PKSAAPSEVPLTPKSAA 353
Cdd:PRK12270  110 AAAVEDEVTPLRGAAAA 126
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
277-459 9.70e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 52.96  E-value: 9.70e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 277 PTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSA-APSEVPPTP---------KSAAPSEVPPTPKSAAPSEVP 346
Cdd:PRK12323 381 PVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAaAPARRSPAPealaaarqaSARGPGGAPAPAPAPAAAPAA 460

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 347 LTPKSAAQSSVPPTPKSAVPS-EAPPTPRSAAPSDVPP---TPKSNGHIANGSIPGTPSVAQESAKATPAATPAATATPA 422
Cdd:PRK12323 461 AARPAAAGPRPVAAAAAAAPArAAPAAAPAPADDDPPPweeLPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFET 540

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 453232914 423 ATATPAATGTPKADTAFNFEETPATPRSSVPATPTES 459
Cdd:PRK12323 541 LAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMF 577
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 302-387 1.37e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 52.41  E-value: 1.37e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 302 AASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPsevpltpksAAQSSVPPTPKSAVPSEAPPTPRSAAPSDV 381
Cdd:PRK14951 375 PAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPA---------APPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445


                 ....*.
gi 453232914 382 PPTPKS 387
Cdd:PRK14951 446 ALAPAP 451
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 305-386 2.45e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 51.81  E-value: 2.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  305 EKQSVPPT---------PKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRS 375
Cdd:PRK12270   21 DPNSVDPSwreffadygPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP 100

                          90
                  ....*....|.
gi 453232914  376 AAPSDVPPTPK 386
Cdd:PRK12270  101 AAAAAAAPAAA 111
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 274-375 2.75e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 51.43  E-value: 2.75e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  274 LDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPsevPPTPKSAAPSEVPLTPKSAA 353
Cdd:PRK12270   19 LADPNSVDPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPP---AAAAPAAPPKPAAAAAAAAA 95

                          90       100
                  ....*....|....*....|..
gi 453232914  354 QSSVPPTPKSAVPSEAPPTPRS 375
Cdd:PRK12270   96 PAAPPAAAAAAAPAAAAVEDEV 117
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
280-456 4.75e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 50.64  E-value: 4.75e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 280 DEEPAAELEADAGSEVPPT--PKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLT----PKSAA 353
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAaaPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASArgpgGAPAP 450

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 354 QSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKSNGHIANGSIPGTP------------SVAQESAKATPAATPAATATP 421
Cdd:PRK12323 451 APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPpweelppefaspAPAQPDAAPAGWVAESIPDPA 530

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 453232914 422 AATATPAATGTPKADTAFNFEETPATPRSSVPATP 456
Cdd:PRK12323 531 TADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRP 565
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 258-386 5.88e-06

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 50.46  E-value: 5.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 258 ELQAPPEGKRPRTPNDLD-----NPTADEEPAAELEADAGSEVPPTPKTAASEKQsvPPTPKSAAPSEVPPTPKSAAPSE 332
Cdd:PTZ00449 539 ESDEPKEGGKPGETKEGEvgkkpGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEE--PKKPKRPRSAQRPTRPKSPKLPE 616

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 453232914 333 VPPTPKSAAPSEVPLTPKSaaqssvPPTPKSAVPSEAPPTPRSAAPSDVPPTPK 386
Cdd:PTZ00449 617 LLDIPKSPKRPESPKSPKR------PPPPQRPSSPERPEGPKIIKSPKPPKSPK 664
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
260-374 2.13e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 48.23  E-value: 2.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 260 QAPPEGKRPRTPNDLDNPtADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPkSAAPSEVPPTPKSAAPSEVPPTPKS 339
Cdd:PRK14971 364 QKGDDASGGRGPKQHIKP-VFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQS-ATQPAGTPPTVSVDPPAAVPVNPPS 441

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 453232914 340 AAPSEVPLTPKSAAQssvpPTPKSAVPSEAPPTPR 374
Cdd:PRK14971 442 TAPQAVRPAQFKEEK----KIPVSKVSSLGPSTLR 472
flhF PRK06995
flagellar biosynthesis protein FlhF;
279-385 2.91e-05

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 47.65  E-value: 2.91e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 279 ADEEPAAELEADAGSEVPPTPKTAASEKQSVPP--TPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSS 356
Cdd:PRK06995  44 ADSDLAALAPPAAAAPAAAQPPPAAAPAAVSRPaaPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERA 123

                         90       100
                 ....*....|....*....|....*....
gi 453232914 357 VPPTPKSAVPSEAPPTPRSAAPSDVPPTP 385
Cdd:PRK06995 124 AAENAARRLARAAAAAPRPRVPADAAAAV 152
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 279-390 3.96e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 47.67  E-value: 3.96e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 279 ADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVP-PTPKSAAPSEVPPTPKSAAPSEVP---LTPKSAAQ 354
Cdd:PRK07764 390 GAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPaPAPAPAPPSPAGNAPAGGAPSPPPaaaPSAQPAPA 469

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 453232914 355 SSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKSNGH 390
Cdd:PRK07764 470 PAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
173-379 4.34e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 47.54  E-value: 4.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 173 EPAPAEEAPQEEVPAEEPVAEETAPAEEAAVEEPVVEEAAPVEEAPEAEETAPAEEPlievaveeapaeepvaeeaepea 252
Cdd:PRK07003 368 PGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAE----------------------- 424

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 253 ekqefelqAPPEGKRPRTPNDLDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSE 332
Cdd:PRK07003 425 --------APPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRA 496

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 453232914 333 VPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPS 379
Cdd:PRK07003 497 AAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPA 543
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 259-401 5.07e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 47.22  E-value: 5.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  259 LQAPPEGKRPRTPNDLDNPTadeePAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPK 338
Cdd:pfam05109 458 LTAPASTGPTVSTADVTSPT----PAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPN 533

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  339 SAAPSEVPLTPKSAAQSSVP-----------PTPKSAVPS---------EAPPTPRSAAPSDVPPTPKSNghIANGSIPG 398
Cdd:pfam05109 534 ATSPTLGKTSPTSAVTTPTPnatsptpavttPTPNATIPTlgktsptsaVTTPTPNATSPTVGETSPQAN--TTNHTLGG 611


                  ...
gi 453232914  399 TPS 401
Cdd:pfam05109 612 TSS 614
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 313-405 5.81e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.02  E-value: 5.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 313 PKSAAPSEVPPTPKSAAPsevpptPKSAAPSEVPLTPKSAAQSSVPPTPKS-----AVPSEAPPTPRSAAPSDVPPTPKS 387
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPAR------PEAAAPAAAPVAQAAAAPAPAAAPAAAasapaAPPAAAPPAPVAAPAAAAPAAAPA 439

                         90
                 ....*....|....*...
gi 453232914 388 NGHIANGSIPGTPSVAQE 405
Cdd:PRK14951 440 AAPAAVALAPAPPAQAAP 457
PRK10856 PRK10856
cytoskeleton protein RodZ;
302-385 5.82e-05

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 46.17  E-value: 5.82e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 302 AASEKQSVPPTPKSAAPSevPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSS--VPPTPKSAVPSEAPPTPRSAAPS 379
Cdd:PRK10856 155 SQNSGQSVPLDTSTTTDP--ATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNavVAPSQANVDTAATPAPAAPATPD 232


                 ....*.
gi 453232914 380 DVPPTP 385
Cdd:PRK10856 233 GAAPLP 238
PRK10856 PRK10856
cytoskeleton protein RodZ;
284-380 6.03e-05

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 46.17  E-value: 6.03e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 284 AAELEADAGSEVPPTPKTAASEKQ---SVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPT 360
Cdd:PRK10856 151 SAELSQNSGQSVPLDTSTTTDPATtpaPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPAT 230

                         90       100
                 ....*....|....*....|
gi 453232914 361 PKSAVPSEAPPTPRSAAPSD 380
Cdd:PRK10856 231 PDGAAPLPTDQAGVSTPAAD 250
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 260-373 8.32e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 46.63  E-value: 8.32e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 260 QAPPEGKRPRTPndldnPTADEEPAAeleADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKS 339
Cdd:PRK14951 385 EAAAPAAAPVAQ-----AAAAPAPAA---APAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAA 456

                         90       100       110
                 ....*....|....*....|....*....|....
gi 453232914 340 AAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTP 373
Cdd:PRK14951 457 PETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490
PRK11633 PRK11633
cell division protein DedD; Provisional
 277-378 1.05e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 44.61  E-value: 1.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 277 PTADEEPAAELEADAGSEVPPTP-KTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPlTPKSAAQS 355
Cdd:PRK11633  45 PKPGDRDEPDMMPAATQALPTQPpEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKP-KPKPKPQQ 123

                         90       100
                 ....*....|....*....|...
gi 453232914 356 SVPPTPKSAvPSEAPPTPRSAAP 378
Cdd:PRK11633 124 KVEAPPAPK-PEPKPVVEEKAAP 145
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 260-401 1.44e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 45.75  E-value: 1.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 260 QAPPEGKRPRTPNDLDNPTADEEPAAELEADAGSEVPPTPKTAASEKQ-SVPPTPKSAAPSEVPPTPKSAAPSEVPPTPK 338
Cdd:PRK07764 631 GAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPaAPPPAPAPAAPAAPAGAAPAQPAPAPAATPP 710

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 453232914 339 SAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSA-APSDVPPTPKSNGHIANGSIPGTPS 401
Cdd:PRK07764 711 AGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPpDPAGAPAQPPPPPAPAPAAAPAAAP 774
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 262-387 2.08e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 45.30  E-value: 2.08e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 262 PPEGKRPRtPNDLDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPsEVPPTPKSAA 341
Cdd:PLN03209 390 PPSSSPAS-SKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTA-PTGVSPSVSS 467

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 453232914 342 PSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKS 387
Cdd:PLN03209 468 TSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPS 513
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
261-439 2.13e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 45.25  E-value: 2.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 261 APPEGKRPRTPNDLDNPTADEEPAAELEADAGSEVPPTPK----TAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPT 336
Cdd:PRK12323 390 AAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPApealAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGP 469

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 337 PKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTP-----KSNGHIANGSIPGTPSVAQESAKATP 411
Cdd:PRK12323 470 RPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPagwvaESIPDPATADPDDAFETLAPAPAAAP 549

                        170       180
                 ....*....|....*....|....*...
gi 453232914 412 AATPAATATPAATATPAATGTPKADTAF 439
Cdd:PRK12323 550 APRAAAATEPVVAPRPPRASASGLPDMF 577
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 279-407 2.70e-04

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 44.69  E-value: 2.70e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 279 ADEE-----PAAELEADA---GSEVPPTPKTAASEKQSVPPTPK-SAAPSEVPPTPKSAAPSEVPPTpksaapsevplTP 349
Cdd:PLN02217 531 SDEEilkftPAQYIQGDAwipGKGVPYIPGLFAGNPGSTNSTPTgSAASSNTTFSSDSPSTVVAPST-----------SP 599

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 453232914 350 KSAAQSSVPPTPKSAV-PSEAPPTPRSAAPSDVPPTPKSNGHIAngsipGTPSVAQESA 407
Cdd:PLN02217 600 PAGHLGSPPATPSKIVsPSTSPPASHLGSPSTTPSSPESSIKVA-----STETASPESS 653
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
312-387 3.88e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 43.47  E-value: 3.88e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 453232914 312 TPKSAAPSEVPPTPKSAAPSEVPPTPKsaapsevPLTPKSAAQSSVPPTPKSAVPSEAP-PTPRSAAPSDVPPTPKS 387
Cdd:PRK13042  23 TTTQAANATTPSSTKVEAPQSTPPSTK-------VEAPQSKPNATTPPSTKVEAPQQTPnATTPSSTKVETPQSPTT 92
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 316-397 4.32e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 44.03  E-value: 4.32e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 316 AAPSEVPPTPKSAAPSEVPPTPksaAPSEvplTPKSAAQSSVPPT-PKSAVPSEAPPTPRSAAPSdVPPTPKSNGHIANG 394
Cdd:PRK14950 362 PVPAPQPAKPTAAAPSPVRPTP---APST---RPKAAAAANIPPKePVRETATPPPVPPRPVAPP-VPHTPESAPKLTRA 434


                 ...
gi 453232914 395 SIP 397
Cdd:PRK14950 435 AIP 437
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
291-387 4.39e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.00  E-value: 4.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 291 AGSEVPPTPKTAASEKqsvPPTPKSAAPsevPPTPKSAAPSevpPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAP 370
Cdd:PRK14971 365 KGDDASGGRGPKQHIK---PVFTQPAAA---PQPSAAAAAS---PSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAV 435

                         90
                 ....*....|....*...
gi 453232914 371 PT-PRSAAPSDVPPTPKS 387
Cdd:PRK14971 436 PVnPPSTAPQAVRPAQFK 453
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
283-385 5.44e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.00  E-value: 5.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 283 PAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTpk 362
Cdd:PRK14971 363 TQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPP-- 440

                         90       100
                 ....*....|....*....|...
gi 453232914 363 SAVPSEAPPTPrsaAPSDVPPTP 385
Cdd:PRK14971 441 STAPQAVRPAQ---FKEEKKIPV 460
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 260-387 5.76e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.01  E-value: 5.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  260 QAPPEGKRPRTPNDLDNPTADEEPAAELEADAGSEVPPTPKTAASE----KQSVPPTPKSAAPSEVPPTPK------SAA 329
Cdd:PHA03307   99 SPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPgpppAASPPAAGASPAAVASDAASSrqaalpLSS 178

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 453232914  330 PSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKS 387
Cdd:PHA03307  179 PEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASS 236
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 283-387 5.78e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 43.70  E-value: 5.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 283 PAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPK--SAAQSSVPPT 360
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQlqRAQGATKAKK 440

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 453232914 361 PKSAVPSEAPPTP--------RSAAPSDVPPTPKS 387
Cdd:PRK07994 441 SEPAAASRARPVNsalerlasVRPAPSALEKAPAK 475
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 293-383 5.86e-04

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 42.93  E-value: 5.86e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 293 SEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSV---PPTPKSAVPSEA 369
Cdd:PHA02682  80 SPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTrqcPPAPPLPTPKPA 159

                         90
                 ....*....|....
gi 453232914 370 PPTPRSAAPSDVPP 383
Cdd:PHA02682 160 PAAKPIFLHNQLPP 173
flhF PRK06995
flagellar biosynthesis protein FlhF;
302-407 5.90e-04

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 43.42  E-value: 5.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 302 AASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDV 381
Cdd:PRK06995  44 ADSDLAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERA 123

                         90       100
                 ....*....|....*....|....*..
gi 453232914 382 -PPTPKSNGHIANGSIPGTPSVAQESA 407
Cdd:PRK06995 124 aAENAARRLARAAAAAPRPRVPADAAA 150
PRK10856 PRK10856
cytoskeleton protein RodZ;
270-357 6.17e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 43.09  E-value: 6.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 270 TPNDLDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPsevPLTP 349
Cdd:PRK10856 171 DPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAG---VSTP 247


                 ....*...
gi 453232914 350 KSAAQSSV 357
Cdd:PRK10856 248 AADPNALV 255
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 279-370 6.29e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 43.73  E-value: 6.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  279 ADEEPAAeleADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPP--TPKSAAPSEVPPTPKSAAPSevpltPKSAAQSS 356
Cdd:PRK12270   34 ADYGPGS---TAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPaaAAPAAPPKPAAAAAAAAAPA-----APPAAAAA 105

                          90
                  ....*....|....
gi 453232914  357 VPPTPKSAVPSEAP 370
Cdd:PRK12270  106 AAPAAAAVEDEVTP 119
PRK11633 PRK11633
cell division protein DedD; Provisional
 277-372 6.34e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 42.30  E-value: 6.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 277 PTADEEPAAElEADAGSEVPPT--PKTAASEKQSVPPTPKSAAPSEVPPTPKsaapseVPPTPKSAAPSEVPLTPKsaaq 354
Cdd:PRK11633  64 PTQPPEGAAE-AVRAGDAAAPSldPATVAPPNTPVEPEPAPVEPPKPKPVEK------PKPKPKPQQKVEAPPAPK---- 132

                         90
                 ....*....|....*...
gi 453232914 355 ssvpPTPKSAVPSEAPPT 372
Cdd:PRK11633 133 ----PEPKPVVEEKAAPT 146
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
276-385 7.27e-04

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 43.19  E-value: 7.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 276 NPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPltpksaaQS 355
Cdd:PRK13335  53 NITAGANSATTQAANTRQERTPKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTT-------ES 125

                         90       100       110
                 ....*....|....*....|....*....|
gi 453232914 356 SVPPTPKSAVPSEAPPTPRSAAPSDVPPTP 385
Cdd:PRK13335 126 TTPKTKVTTPPSTNTPQPMQSTKSDTPQSP 155
PHA03247 PHA03247
large tegument protein UL36; Provisional
 298-387 7.28e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 7.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  298 TPKTAASEKQSVPPTPKSAAP------SEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPP 371
Cdd:PHA03247  374 HPKRASLPTRKRRSARHAATPfargpgGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQ 453

                          90
                  ....*....|....*.
gi 453232914  372 TPRSAAPSDVPPTPKS 387
Cdd:PHA03247  454 PPAPATEPAPDDPDDA 469
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 276-358 9.05e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 43.34  E-value: 9.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  276 NPTADEEPAAELEADAGSEVPPTPKTAASEKQ-SVPPTPKSAAPSeVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQ 354
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAaPAPAPPAAAAPA-APPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115


                  ....
gi 453232914  355 SSVP 358
Cdd:PRK12270  116 EVTP 119
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 283-385 1.00e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 42.63  E-value: 1.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 283 PAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAApseVPPTPKSAAPSEVPLTPksaAQSSVPPTPK 362
Cdd:PTZ00436 222 PAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAA---APPAKAAAPPAKAAAPP---AKAAAPPAKA 295

                         90       100
                 ....*....|....*....|....*
gi 453232914 363 SAVPSE--APPTPRSAAPSDVPPTP 385
Cdd:PTZ00436 296 AAAPAKaaAAPAKAAAAPAKAAAPP 320
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 316-389 1.06e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 43.01  E-value: 1.06e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 453232914 316 AAPSEVPPTPKSAAPSEVPPTPKSAAPSEvplTPKSAAQSSVPPTPKSA-VPSEAPPTPRSA----APSDVPPTPKSNG 389
Cdd:PRK14954 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAK---PEAPGARPAELPSPASApTPEQQPPVARSAplppSPQASAPRNVASG 457
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 301-408 1.09e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.93  E-value: 1.09e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 301 TAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSD 380
Cdd:PRK07994 367 EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAA 446

                         90       100
                 ....*....|....*....|....*...
gi 453232914 381 VPPTPKSNGHIANGSIPGTPSVAQESAK 408
Cdd:PRK07994 447 SRARPVNSALERLASVRPAPSALEKAPA 474
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 261-391 1.10e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.05  E-value: 1.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 261 APPEGKRPRTPNDLDNPTADEEPAAELEADAGS----------EVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAP 330
Cdd:PRK07764 599 GPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGaaaapaeasaAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAP 678

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 453232914 331 SEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKSNGHI 391
Cdd:PRK07764 679 AAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPV 739
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
287-371 1.20e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 42.64  E-value: 1.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 287 LEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVP 366
Cdd:PRK14948 510 LESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPT 589


                 ....*
gi 453232914 367 SEAPP 371
Cdd:PRK14948 590 KDSSP 594
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 279-385 1.31e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 42.24  E-value: 1.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 279 ADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAApseVPPTPKSAAPSEVPLTPKSA----AQ 354
Cdd:PTZ00436 239 AAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAA---APPAKAAAAPAKAAAAPAKAaaapAK 315

                         90       100       110
                 ....*....|....*....|....*....|...
gi 453232914 355 SSVPPTPKSAVPSEA--PPTPRSAAPSDVPPTP 385
Cdd:PTZ00436 316 AAAPPAKAAAPPAKAatPPAKAAAPPAKAAAAP 348
PHA02030 PHA02030
hypothetical protein
 287-386 1.39e-03

hypothetical protein


Pssm-ID: 222843 [Multi-domain]  Cd Length: 336  Bit Score: 41.89  E-value: 1.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 287 LEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPksAAPSEVPPtpksAAPSeVPLTPKSAAQSSVPPTPKSAVP 366
Cdd:PHA02030 247 LGGGEDLIIKPKSKAAGSNLPAVPNVAADAGSAAAPAVP--AAAAAVAQ----AAPS-VPQVPNVAVLPDVPQVAPVAAP 319

                         90       100
                 ....*....|....*....|
gi 453232914 367 SeAPPTPrsAAPSdVPPTPK 386
Cdd:PHA02030 320 A-APEVP--AVPV-VPAAPQ 335
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 318-402 1.45e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 42.57  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  318 PSEVPPT----------PKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAP-PTPRSAAPSDVPPTPK 386
Cdd:PRK12270   22 PNSVDPSwreffadygpGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPkPAAAAAAAAAPAAPPA 101

                          90
                  ....*....|....*.
gi 453232914  387 SNGHIANGSIPGTPSV 402
Cdd:PRK12270  102 AAAAAAPAAAAVEDEV 117
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 312-407 1.57e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 42.49  E-value: 1.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 312 TPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAaQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPksnghi 391
Cdd:PRK14950 344 TSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPA-PSTRPKAAAAANIPPKEPVRETATPPPVPPRP------ 416

                         90
                 ....*....|....*.
gi 453232914 392 ANGSIPGTPSVAQESA 407
Cdd:PRK14950 417 VAPPVPHTPESAPKLT 432
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 307-414 1.67e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 1.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 307 QSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDvPPTPK 386
Cdd:PRK07764 383 RRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSP-PPAAA 461

                         90       100
                 ....*....|....*....|....*...
gi 453232914 387 SNGHIANGSIPGTPSVAQESAKATPAAT 414
Cdd:PRK07764 462 PSAQPAPAPAAAPEPTAAPAPAPPAAPA 489
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 257-371 1.68e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 41.91  E-value: 1.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 257 FELQAPPEGKRPRTPNDlDNPTADEEPAAELEADAGSEVPPTPKTAAsekqsvPPTPKSAAPSEVPPTPksaapsevppt 336
Cdd:PHA03264 264 YEPPPAPSGGSPAPPGD-DRPEAKPEPGPVEDGAPGRETGGEGEGPE------PAGRDGAAGGEPKPGP----------- 325

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 453232914 337 PKSAAPSEVPLT-PKSAAQSSVPPTPKSAVPSEAPP 371
Cdd:PHA03264 326 PRPAPDADRPEGwPSLEAITFPPPTPATPAVPRARP 361
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 260-378 1.74e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.16  E-value: 1.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 260 QAPPEGKRPRTPndlDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTP--------KSAAPS 331
Cdd:PRK07994 391 VAPPQAPAVPPP---PASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNsalerlasVRPAPS 467

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 453232914 332 EVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPS-EAPPTPRSAAP 378
Cdd:PRK07994 468 ALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKAlEHEKTPELAAK 515
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 289-407 1.79e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 1.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 289 ADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEvPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPK-SAVPS 367
Cdd:PRK07764 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAA-PAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDaSDGGD 667

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 453232914 368 EAPPTPRSAAPSDVPPTPKSNGHIANGSIPGTPSVAQESA 407
Cdd:PRK07764 668 GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAA 707
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 260-407 1.79e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 1.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 260 QAPPEGKRPRTPNDLDNPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPksAAPSEVPPTPKS 339
Cdd:PRK07764 625 AAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAP--AAPAGAAPAQPA 702

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 340 AAPSEVPLTPKSAAQSSVPPTPKSAvpsEAPPTPRSAAPSDVPPTPKSN--GHIANGSIPGTPSVAQESA 407
Cdd:PRK07764 703 PAPAATPPAGQADDPAAQPPQAAQG---ASAPSPAADDPVPLPPEPDDPpdPAGAPAQPPPPPAPAPAAA 769
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 262-388 2.12e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 41.29  E-value: 2.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 262 PPEGKRPRTPNDLDnPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPksAAPSEVPPTPKSAA 341
Cdd:NF040712 200 ATVPRLAREPADAR-PEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGP--GAAPAAEPDEATRD 276

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 453232914 342 PSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKSN 388
Cdd:NF040712 277 AGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPK 323
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 283-401 2.21e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 41.97  E-value: 2.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 283 PAAELEADAGSEVPPT----PKTAASEKQSVPPT----PKSAAPSEvPPTPKSAAPSEVPPtpkSAAPS------EVPLT 348
Cdd:PRK14959 367 PVESLRPSGGGASAPSgsaaEGPASGGAATIPTPgtqgPQGTAPAA-GMTPSSAAPATPAP---SAAPSprvpwdDAPPA 442

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 453232914 349 PksaAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKSNGHiANGSIPGTPS 401
Cdd:PRK14959 443 P---PRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGD-PSDTAEHTPS 491
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 293-367 2.28e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 41.85  E-value: 2.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 293 SEVPPTPKTAASEKQSVPPTPKSAAPSEVPPT--------PKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSA 364
Cdd:PRK14954 378 GGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAkpeapgarPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASG 457


                 ...
gi 453232914 365 VPS 367
Cdd:PRK14954 458 KPG 460
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 309-382 2.45e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 41.53  E-value: 2.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 309 VPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQ--SSVPPTPKSAVPSEAPP------TPRSAAPSD 380
Cdd:PHA03264 254 VPPYFEESKGYEPPPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRetGGEGEGPEPAGRDGAAGgepkpgPPRPAPDAD 333


                 ..
gi 453232914 381 VP 382
Cdd:PHA03264 334 RP 335
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 277-386 2.51e-03

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 41.00  E-value: 2.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 277 PTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAA--PSEVPLTPKSAAQ 354
Cdd:PHA02682  43 PDADVDPLDKYSVKEAGRYYQSRLKANSACMQRPSGQSPLAPSPACAAPAPACPACAPAAPAPAVtcPAPAPACPPATAP 122

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 453232914 355 SSVPPT--PKSAVPSEA-PPTPRSAAPSDVPPTPK 386
Cdd:PHA02682 123 TCPPPAvcPAPARPAPAcPPSTRQCPPAPPLPTPK 157
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
291-371 2.57e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 41.16  E-value: 2.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 291 AGSEVPPTPKTAAseKQSVPPT-----PKSAAPSEVPPTPKSAAPSevpPTPKSAAPSEVPL-TPKSaaqssvpPTPKSa 364
Cdd:PRK13042  28 ANATTPSSTKVEA--PQSTPPStkveaPQSKPNATTPPSTKVEAPQ---QTPNATTPSSTKVeTPQS-------PTTKQ- 94


                 ....*..
gi 453232914 365 VPSEAPP 371
Cdd:PRK13042  95 VPTEINP 101
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 283-386 2.72e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 41.64  E-value: 2.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 283 PAAELEADAGSEVPpTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAapseVPPTPksAAPSEVPLTPKSAAQSSVPPTPK 362
Cdd:PHA03269  27 PIPELHTSAATQKP-DPAPAPHQAASRAPDPAVAPTSAASRKPDLA----QAPTP--AASEKFDPAPAPHQAASRAPDPA 99

                         90       100
                 ....*....|....*....|....
gi 453232914 363 SAVPSEAPPTPRSAAPSDVPPTPK 386
Cdd:PHA03269 100 VAPQLAAAPKPDAAEAFTSAAQAH 123
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 278-349 3.13e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 3.13e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 453232914 278 TADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPK--SAAPSEVPPTPKSAAPSEVPPTPKSAA-PSE--VPLTP 349
Cdd:PTZ00144 120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAasKPTPPAAAKPPEPAPAAKPPPTPVARAdPREtrVPMSR 196
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
308-396 3.43e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 41.10  E-value: 3.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 308 SVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKS 387
Cdd:PRK14948 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSPE 595

                         90
                 ....*....|....*..
gi 453232914 388 NGHIA--------NGSI 396
Cdd:PRK14948 596 EIDKAaknladffNGEI 612
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
304-388 3.43e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 41.10  E-value: 3.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 304 SEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSsvPPTPKSAVPSEAPPTPRSAAPsdvPP 383
Cdd:PRK14948 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKAS--PPIPVPAEPTEPSPTPPANAA---NA 435


                 ....*
gi 453232914 384 TPKSN 388
Cdd:PRK14948 436 PPSLN 440
Rib_recp_KP_reg pfam05104
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ...
 283-372 3.83e-03

Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.


Pssm-ID: 461548 [Multi-domain]  Cd Length: 140  Bit Score: 38.56  E-value: 3.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  283 PAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAaPSEVPPTPKSAAPSEVP-PTPKSAAPSEVPLTPKSAAQSSVPPTP 361
Cdd:pfam05104  51 PESEQADESEEEPREFKTPDEAPSAALEPEPVPT-PVPAPVEPEPAPPSESPaPSPKEKKKKEKKSAKVEPAETPEAVQP 129

                          90
                  ....*....|.
gi 453232914  362 KSAVPSEAPPT 372
Cdd:pfam05104 130 KPALEKEEPPA 140
FAP pfam07174
Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment ...
 287-382 4.21e-03

Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix.


Pssm-ID: 429334  Cd Length: 301  Bit Score: 40.29  E-value: 4.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  287 LEADAGSEVPPTPktaasekqsVPPTPKSAAPSEVPPTPKSAAPseVPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSAVP 366
Cdd:pfam07174  33 LPAVAHADPEPAP---------PPPSTATAPPAPPPPPPAPAAP--APPPPPAAPNAPNAPPPPADPNAPPPPPADPNAP 101

                          90
                  ....*....|....*.
gi 453232914  367 SEAPPTPRSAAPSDVP 382
Cdd:pfam07174 102 PPPAVDPNAPEPGRID 117
PRK10856 PRK10856
cytoskeleton protein RodZ;
270-365 4.41e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 40.39  E-value: 4.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 270 TPNDLDNPTADEEPAAELEADAgseVPPTPKTAASEKQSVPPTPKSAA--PSEVPPTPKSAAPSEVPPTPKSAAPSEVPL 347
Cdd:PRK10856 160 QSVPLDTSTTTDPATTPAPAAP---VDTTPTNSQTPAVATAPAPAVDPqqNAVVAPSQANVDTAATPAPAAPATPDGAAP 236

                         90
                 ....*....|....*...
gi 453232914 348 TPKSAAQSSVPPTPKSAV 365
Cdd:PRK10856 237 LPTDQAGVSTPAADPNAL 254
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
268-380 4.47e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 40.56  E-value: 4.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 268 PRTPNDLDNPTADEEPAAELEADaGSEVPPTP---KTAASEKQSVPPTPKSAAPsEVPPTPKSAAPSEVPPTPKSAAPSE 344
Cdd:PRK12373 202 GKARYNASKALAEDIGDTVKRID-GTEVPLLApwqGDAAPVPPSEAARPKSADA-ETNAALKTPATAPKAAAKNAKAPEA 279

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 453232914 345 VPLTPKSAAQSSVPPTPKSAVPSEAPP---------TPRSAAPSD 380
Cdd:PRK12373 280 QPVSGTAAAEPAPKEAAKAAAAAAKPAledkprplgIARPGGADD 324
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 254-394 4.91e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 40.77  E-value: 4.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 254 KQEFELqAPPEGKRPRTPNDLDNPTADEEpAAELEADAGSEVPPTPKTAASE-KQSVPPTPKSAAPSEVPPTPkSAAPSE 332
Cdd:NF033838 352 EAELEL-VKEEAKEPRNEEKIKQAKAKVE-SKKAEATRLEKIKTDRKKAEEEaKRKAAEEDKVKEKPAEQPQP-APAPQP 428

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 453232914 333 VPPTPKSAAPSEVPLTPKSAAQSSVPPTPKSA------VPSEAPPTPRSAAPsdvPPTPKSNGHIANG 394
Cdd:NF033838 429 EKPAPKPEKPAEQPKAEKPADQQAEEDYARRSeeeynrLTQQQPPKTEKPAQ---PSTPKTGWKQENG 493
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
301-386 4.93e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.00  E-value: 4.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 301 TAASEKQSVPPTPKSAAPSEVPPTPKSAAPSevpPTPKSAAPSEVPL-TPKSAAQSSVPPTPKSAVPsEAPPTPRsaAPS 379
Cdd:PRK13042  24 TTQAANATTPSSTKVEAPQSTPPSTKVEAPQ---SKPNATTPPSTKVeAPQQTPNATTPSSTKVETP-QSPTTKQ--VPT 97


                 ....*..
gi 453232914 380 DVPPTPK 386
Cdd:PRK13042  98 EINPKFK 104
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 299-380 7.10e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.88  E-value: 7.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914  299 PKTAASEKQSVPPTPKSAapsevpPTPKSAAPseVPPTPKSAAPsevpltPKSAAQSSVPPTPKSAVPSEAPPTPRSAAP 378
Cdd:TIGR00601  77 PKTGTGKVAPPAATPTSA------PTPTPSPP--ASPASGMSAA------PASAVEEKSPSEESATATAPESPSTSVPSS 142


                  ..
gi 453232914  379 SD 380
Cdd:TIGR00601 143 GS 144
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
316-387 7.56e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 40.37  E-value: 7.56e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 453232914 316 AAPSEVPPTPKSAAPsEVPPTPKSAAPSEVPlTPKSAAQSSVPPTPKSAVPsEAPPTPRSAAPSDVPPTPKS 387
Cdd:COG5373   38 AEAAEAASAPAEPEP-EAAAAATAAAPEAAP-APVPEAPAAPPAAAEAPAP-AAAAPPAEAEPAAAPAAASS 106
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
281-400 8.40e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 39.79  E-value: 8.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232914 281 EEPAAELEADAGSEVP---PTPKTAASEKQSVPPTPKSAAPseVPPTPKSAAPSEVPPT-PKSAAPSEVPLTP-KSAAQS 355
Cdd:PRK12373 200 EAGKARYNASKALAEDigdTVKRIDGTEVPLLAPWQGDAAP--VPPSEAARPKSADAETnAALKTPATAPKAAaKNAKAP 277

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 453232914 356 SVPPTPKSAVPSEAPPTPRSAAPSDVPPTPKSNGHIANGSIPGTP 400
Cdd:PRK12373 278 EAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARPGGA 322
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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