NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|212646803|ref|NP_510356|]
View 

Homeodomain-only protein [Caenorhabditis elegans]

Protein Classification

homeobox domain-containing protein( domain architecture ID 10647766)

homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes

CATH:  1.10.10.60
Gene Ontology:  GO:0003677
PubMed:  21557080|26464018|27768937|1357790
SCOP:  4000291

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 92-137 2.14e-05

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


:

Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 40.31  E-value: 2.14e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 212646803    92 KYAPAIIHKLLPAFEANKNPNNDEILEIMADTGLSRKEVRRWFQWR 137
Cdd:smart00389   7 SFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNR 52
 
Name Accession Description Interval E-value
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 92-137 2.14e-05

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 40.31  E-value: 2.14e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 212646803    92 KYAPAIIHKLLPAFEANKNPNNDEILEIMADTGLSRKEVRRWFQWR 137
Cdd:smart00389   7 SFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNR 52
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 92-137 3.91e-05

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 39.53  E-value: 3.91e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 212646803  92 KYAPAIIHKLLPAFEANKNPNNDEILEIMADTGLSRKEVRRWFQWR 137
Cdd:cd00086    6 RFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNR 51
 
Name Accession Description Interval E-value
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 92-137 2.14e-05

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 40.31  E-value: 2.14e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 212646803    92 KYAPAIIHKLLPAFEANKNPNNDEILEIMADTGLSRKEVRRWFQWR 137
Cdd:smart00389   7 SFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNR 52
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 92-137 3.91e-05

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 39.53  E-value: 3.91e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 212646803  92 KYAPAIIHKLLPAFEANKNPNNDEILEIMADTGLSRKEVRRWFQWR 137
Cdd:cd00086    6 RFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNR 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH