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Conserved domains on  [gi|17568117|ref|NP_510277|]
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MYND-type domain-containing protein [Caenorhabditis elegans]

Protein Classification

zinc finger MYND domain-containing protein( domain architecture ID 10484396)

MYND (myeloid-Nervy-DEAF-1) domain-containing protein, defined by a C6HC zinc-chelating motif, does not bind DNA, but instead mediates interactions with other proteins

CATH:  3.30.60.180
Gene Ontology:  GO:0045892|GO:0008270|GO:0005515
PubMed:  19925420
SCOP:  4000530

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-MYND pfam01753
MYND finger;
125-159 2.49e-07

MYND finger;


:

Pssm-ID: 460312  Cd Length: 39  Bit Score: 45.10  E-value: 2.49e-07
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 17568117   125 CWQCNSEA--IYHC--CWNTAYCSVECQQGHWQIHRKFC 159
Cdd:pfam01753   1 CAVCGKEAlkLLRCsrCKSVYYCSKECQKADWPYHKKEC 39
PRK12704 super family cl36166
phosphodiesterase; Provisional
 39-116 2.74e-03

phosphodiesterase; Provisional


The actual alignment was detected with superfamily member PRK12704:

Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 37.45  E-value: 2.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17568117   39 DLQRQWLTDYHDsREKSLVALTEKLHQEfmEDQERVRRDLLVQFKIELDQTKEELEKK--HAENLKEEIEKLSEKHQREL 116
Cdd:PRK12704  68 KLRNEFEKELRE-RRNELQKLEKRLLQK--EENLDRKLELLEKREEELEKKEKELEQKqqELEKKEEELEELIEEQLQEL 144
 
Name Accession Description Interval E-value
zf-MYND pfam01753
MYND finger;
125-159 2.49e-07

MYND finger;


Pssm-ID: 460312  Cd Length: 39  Bit Score: 45.10  E-value: 2.49e-07
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 17568117   125 CWQCNSEA--IYHC--CWNTAYCSVECQQGHWQIHRKFC 159
Cdd:pfam01753   1 CAVCGKEAlkLLRCsrCKSVYYCSKECQKADWPYHKKEC 39
PRK12704 PRK12704
phosphodiesterase; Provisional
 39-116 2.74e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 37.45  E-value: 2.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17568117   39 DLQRQWLTDYHDsREKSLVALTEKLHQEfmEDQERVRRDLLVQFKIELDQTKEELEKK--HAENLKEEIEKLSEKHQREL 116
Cdd:PRK12704  68 KLRNEFEKELRE-RRNELQKLEKRLLQK--EENLDRKLELLEKREEELEKKEKELEQKqqELEKKEEELEELIEEQLQEL 144
 
Name Accession Description Interval E-value
zf-MYND pfam01753
MYND finger;
125-159 2.49e-07

MYND finger;


Pssm-ID: 460312  Cd Length: 39  Bit Score: 45.10  E-value: 2.49e-07
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 17568117   125 CWQCNSEA--IYHC--CWNTAYCSVECQQGHWQIHRKFC 159
Cdd:pfam01753   1 CAVCGKEAlkLLRCsrCKSVYYCSKECQKADWPYHKKEC 39
PRK12704 PRK12704
phosphodiesterase; Provisional
 39-116 2.74e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 37.45  E-value: 2.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17568117   39 DLQRQWLTDYHDsREKSLVALTEKLHQEfmEDQERVRRDLLVQFKIELDQTKEELEKK--HAENLKEEIEKLSEKHQREL 116
Cdd:PRK12704  68 KLRNEFEKELRE-RRNELQKLEKRLLQK--EENLDRKLELLEKREEELEKKEKELEQKqqELEKKEEELEELIEEQLQEL 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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