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Conserved domains on  [gi|17570549|ref|NP_508375|]
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Endoplasmic reticulum-Golgi intermediate compartment protein 1 [Caenorhabditis elegans]

Protein Classification

endoplasmic reticulum-Golgi intermediate compartment family protein( domain architecture ID 10620102)

endoplasmic reticulum-Golgi intermediate compartment (ERGIC) family protein plays a role in transport between the endoplasmic reticulum and Golgi

Gene Ontology:  GO:0006888|GO:0005789|GO:0006890|GO:0016192
PubMed:  11157978

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COPIIcoated_ERV super family cl06835
Endoplasmic reticulum vesicle transporter; This family is conserved from plants and fungi to ...
 110-267 3.64e-39

Endoplasmic reticulum vesicle transporter; This family is conserved from plants and fungi to humans. Erv46 works in close conjunction with Erv41 and together they form a complex which cycles between the endoplasmic reticulum and Golgi complex. Erv46-41 interacts strongly with the endoplasmic reticulum glucosidase II. Mammalian glucosidase II comprises a catalytic alpha-subunit and a 58 kDa beta subunit, which is required for ER localization. All proteins identified biochemically as Erv41p-Erv46p interactors are localized to the early secretory pathway and are involved in protein maturation and processing in the ER and/or sorting into COPII vesicles for transport to the Golgi.


The actual alignment was detected with superfamily member pfam07970:

Pssm-ID: 462327  Cd Length: 225  Bit Score: 136.58  E-value: 3.64e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17570549   110 GCRFESRFEINKVPGNFHLS--------------THSAATQPESYDMRHLIHSIKFGDDVSHKnlkgSFDPLAKRNTSQE 175
Cdd:pfam07970  54 GCRIKGTLEVNKVAGNFHIApgrsfqqggmhvhdLSPYLKLPDKFNFSHTIHHLSFGPDIPGE----KVNPLDGTKVQTD 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17570549   176 NGLNTHEYILKIVPSVHEDYSGTILNSYQYTFghksyiTYH----------HSGKIIPAVWFKYELQPITLKQTEQRQSF 245
Cdd:pfam07970 130 TGNYMFQYFLKVVPTRYEFLDGKKIETNQYSV------TSHerpltggrdeHGRGGLPGVFFNYDISPMKVINTEQRRSF 203

                         170       180
                  ....*....|....*....|..
gi 17570549   246 YAFLTSICAVVGGTFTVAGIID 267
Cdd:pfam07970 204 SHFLTSVCAIIGGVFTVASLID 225
ERGIC_N pfam13850
Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC); This family is the N-terminal of ...
 4-95 1.61e-29

Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC); This family is the N-terminal of ERGIC proteins, ER-Golgi intermediate compartment clusters, otherwise known as Ervs, and is associated with family COPIIcoated_ERV, pfam07970.


:

Pssm-ID: 464000  Cd Length: 91  Bit Score: 107.16  E-value: 1.61e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17570549     4 IRRFDIYRKVPKDLTQPTTVGAVISILCVLFISFMIFNDILAYIFIDLRSEFFIDDpGREGKIDVQVNVSFPHMACEYLG 83
Cdd:pfam13850   1 LKSFDAFPKTPEDYRVRTSSGGIITIISILIILFLFLSELGSYLTGTVDPELVVDK-SRGEKLQINLDITFPAMPCDLLS 79

                          90
                  ....*....|..
gi 17570549    84 VDIQDENGRHEV 95
Cdd:pfam13850  80 VDVMDASGDRQL 91
 
Name Accession Description Interval E-value
COPIIcoated_ERV pfam07970
Endoplasmic reticulum vesicle transporter; This family is conserved from plants and fungi to ...
 110-267 3.64e-39

Endoplasmic reticulum vesicle transporter; This family is conserved from plants and fungi to humans. Erv46 works in close conjunction with Erv41 and together they form a complex which cycles between the endoplasmic reticulum and Golgi complex. Erv46-41 interacts strongly with the endoplasmic reticulum glucosidase II. Mammalian glucosidase II comprises a catalytic alpha-subunit and a 58 kDa beta subunit, which is required for ER localization. All proteins identified biochemically as Erv41p-Erv46p interactors are localized to the early secretory pathway and are involved in protein maturation and processing in the ER and/or sorting into COPII vesicles for transport to the Golgi.


Pssm-ID: 462327  Cd Length: 225  Bit Score: 136.58  E-value: 3.64e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17570549   110 GCRFESRFEINKVPGNFHLS--------------THSAATQPESYDMRHLIHSIKFGDDVSHKnlkgSFDPLAKRNTSQE 175
Cdd:pfam07970  54 GCRIKGTLEVNKVAGNFHIApgrsfqqggmhvhdLSPYLKLPDKFNFSHTIHHLSFGPDIPGE----KVNPLDGTKVQTD 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17570549   176 NGLNTHEYILKIVPSVHEDYSGTILNSYQYTFghksyiTYH----------HSGKIIPAVWFKYELQPITLKQTEQRQSF 245
Cdd:pfam07970 130 TGNYMFQYFLKVVPTRYEFLDGKKIETNQYSV------TSHerpltggrdeHGRGGLPGVFFNYDISPMKVINTEQRRSF 203

                         170       180
                  ....*....|....*....|..
gi 17570549   246 YAFLTSICAVVGGTFTVAGIID 267
Cdd:pfam07970 204 SHFLTSVCAIIGGVFTVASLID 225
ERGIC_N pfam13850
Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC); This family is the N-terminal of ...
 4-95 1.61e-29

Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC); This family is the N-terminal of ERGIC proteins, ER-Golgi intermediate compartment clusters, otherwise known as Ervs, and is associated with family COPIIcoated_ERV, pfam07970.


Pssm-ID: 464000  Cd Length: 91  Bit Score: 107.16  E-value: 1.61e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17570549     4 IRRFDIYRKVPKDLTQPTTVGAVISILCVLFISFMIFNDILAYIFIDLRSEFFIDDpGREGKIDVQVNVSFPHMACEYLG 83
Cdd:pfam13850   1 LKSFDAFPKTPEDYRVRTSSGGIITIISILIILFLFLSELGSYLTGTVDPELVVDK-SRGEKLQINLDITFPAMPCDLLS 79

                          90
                  ....*....|..
gi 17570549    84 VDIQDENGRHEV 95
Cdd:pfam13850  80 VDVMDASGDRQL 91
 
Name Accession Description Interval E-value
COPIIcoated_ERV pfam07970
Endoplasmic reticulum vesicle transporter; This family is conserved from plants and fungi to ...
 110-267 3.64e-39

Endoplasmic reticulum vesicle transporter; This family is conserved from plants and fungi to humans. Erv46 works in close conjunction with Erv41 and together they form a complex which cycles between the endoplasmic reticulum and Golgi complex. Erv46-41 interacts strongly with the endoplasmic reticulum glucosidase II. Mammalian glucosidase II comprises a catalytic alpha-subunit and a 58 kDa beta subunit, which is required for ER localization. All proteins identified biochemically as Erv41p-Erv46p interactors are localized to the early secretory pathway and are involved in protein maturation and processing in the ER and/or sorting into COPII vesicles for transport to the Golgi.


Pssm-ID: 462327  Cd Length: 225  Bit Score: 136.58  E-value: 3.64e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17570549   110 GCRFESRFEINKVPGNFHLS--------------THSAATQPESYDMRHLIHSIKFGDDVSHKnlkgSFDPLAKRNTSQE 175
Cdd:pfam07970  54 GCRIKGTLEVNKVAGNFHIApgrsfqqggmhvhdLSPYLKLPDKFNFSHTIHHLSFGPDIPGE----KVNPLDGTKVQTD 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17570549   176 NGLNTHEYILKIVPSVHEDYSGTILNSYQYTFghksyiTYH----------HSGKIIPAVWFKYELQPITLKQTEQRQSF 245
Cdd:pfam07970 130 TGNYMFQYFLKVVPTRYEFLDGKKIETNQYSV------TSHerpltggrdeHGRGGLPGVFFNYDISPMKVINTEQRRSF 203

                         170       180
                  ....*....|....*....|..
gi 17570549   246 YAFLTSICAVVGGTFTVAGIID 267
Cdd:pfam07970 204 SHFLTSVCAIIGGVFTVASLID 225
ERGIC_N pfam13850
Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC); This family is the N-terminal of ...
 4-95 1.61e-29

Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC); This family is the N-terminal of ERGIC proteins, ER-Golgi intermediate compartment clusters, otherwise known as Ervs, and is associated with family COPIIcoated_ERV, pfam07970.


Pssm-ID: 464000  Cd Length: 91  Bit Score: 107.16  E-value: 1.61e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17570549     4 IRRFDIYRKVPKDLTQPTTVGAVISILCVLFISFMIFNDILAYIFIDLRSEFFIDDpGREGKIDVQVNVSFPHMACEYLG 83
Cdd:pfam13850   1 LKSFDAFPKTPEDYRVRTSSGGIITIISILIILFLFLSELGSYLTGTVDPELVVDK-SRGEKLQINLDITFPAMPCDLLS 79

                          90
                  ....*....|..
gi 17570549    84 VDIQDENGRHEV 95
Cdd:pfam13850  80 VDVMDASGDRQL 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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