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Conserved domains on  [gi|17565148|ref|NP_508003|]
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G_PROTEIN_RECEP_F1_2 domain-containing protein [Caenorhabditis elegans]

Protein Classification

Serpentine_r_xa domain-containing protein( domain architecture ID 10506132)

Serpentine_r_xa domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Serpentine_r_xa pfam03383
Caenorhabditis serpentine receptor-like protein, class xa; This family contains various ...
42-198 1.20e-70

Caenorhabditis serpentine receptor-like protein, class xa; This family contains various Caenorhabditis proteins, some of which are annotated as being serpentine receptors, mainly of the xa class.


:

Pssm-ID: 251914  Cd Length: 153  Bit Score: 216.11  E-value: 1.20e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17565148    42 SGPFVYIVFFTGFGIIEKVNnfIMVDAWpiSEWWSPNGGYEKYRQLIGSNVTLVFLICYLTPLFLDWIITLHRISIFLSP 121
Cdd:pfam03383   1 KFPFVYIINMTISGIVDKIA--FMVDFW--TPLILPDGGYEEYRQFIGSEITLVGTFCYLHPLFLTVLMTLHRISIVISP 76
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17565148   122 LRSKIWFNDKNVSIYCVIVSILVIIWLLVQQLSSCTLNFNALTSFLESACAPDRHPITWFQNKFLIYVPIFSMVVNA 198
Cdd:pfam03383  77 AKQPIWFTDRKVWLYCFGVLILSLILLLIPYLSSCPVNFNARTLSFETACAPERHPITLFQNKYLIWVPVTTMVVNV 153
 
Name Accession Description Interval E-value
Serpentine_r_xa pfam03383
Caenorhabditis serpentine receptor-like protein, class xa; This family contains various ...
42-198 1.20e-70

Caenorhabditis serpentine receptor-like protein, class xa; This family contains various Caenorhabditis proteins, some of which are annotated as being serpentine receptors, mainly of the xa class.


Pssm-ID: 251914  Cd Length: 153  Bit Score: 216.11  E-value: 1.20e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17565148    42 SGPFVYIVFFTGFGIIEKVNnfIMVDAWpiSEWWSPNGGYEKYRQLIGSNVTLVFLICYLTPLFLDWIITLHRISIFLSP 121
Cdd:pfam03383   1 KFPFVYIINMTISGIVDKIA--FMVDFW--TPLILPDGGYEEYRQFIGSEITLVGTFCYLHPLFLTVLMTLHRISIVISP 76
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17565148   122 LRSKIWFNDKNVSIYCVIVSILVIIWLLVQQLSSCTLNFNALTSFLESACAPDRHPITWFQNKFLIYVPIFSMVVNA 198
Cdd:pfam03383  77 AKQPIWFTDRKVWLYCFGVLILSLILLLIPYLSSCPVNFNARTLSFETACAPERHPITLFQNKYLIWVPVTTMVVNV 153
 
Name Accession Description Interval E-value
Serpentine_r_xa pfam03383
Caenorhabditis serpentine receptor-like protein, class xa; This family contains various ...
42-198 1.20e-70

Caenorhabditis serpentine receptor-like protein, class xa; This family contains various Caenorhabditis proteins, some of which are annotated as being serpentine receptors, mainly of the xa class.


Pssm-ID: 251914  Cd Length: 153  Bit Score: 216.11  E-value: 1.20e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17565148    42 SGPFVYIVFFTGFGIIEKVNnfIMVDAWpiSEWWSPNGGYEKYRQLIGSNVTLVFLICYLTPLFLDWIITLHRISIFLSP 121
Cdd:pfam03383   1 KFPFVYIINMTISGIVDKIA--FMVDFW--TPLILPDGGYEEYRQFIGSEITLVGTFCYLHPLFLTVLMTLHRISIVISP 76
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17565148   122 LRSKIWFNDKNVSIYCVIVSILVIIWLLVQQLSSCTLNFNALTSFLESACAPDRHPITWFQNKFLIYVPIFSMVVNA 198
Cdd:pfam03383  77 AKQPIWFTDRKVWLYCFGVLILSLILLLIPYLSSCPVNFNARTLSFETACAPERHPITLFQNKYLIWVPVTTMVVNV 153
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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