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Conserved domains on  [gi|17560040|ref|NP_507098|]
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Major sperm protein [Caenorhabditis elegans]

Protein Classification

motile sperm domain-containing protein( domain architecture ID 1903225)

motile sperm domain-containing protein may form filaments, similar to major motile sperm protein (MSP) and vesicle-associated membrane protein-associated proteins

CATH:  2.60.40.10
PubMed:  8913307
SCOP:  4007566

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Motile_Sperm super family cl44412
MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These ...
 215-292 1.00e-12

MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins.


The actual alignment was detected with superfamily member pfam00635:

Pssm-ID: 459882  Cd Length: 109  Bit Score: 63.54  E-value: 1.00e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17560040   215 GVQTVSIANNTKSRKAFKVKTSDNLLYRVNPVFGFVEPGDKLSIDVLRHNGVE-----KTDHLIVLTSNASAEQNCARGV 289
Cdd:pfam00635  20 GTSTLTLKNTSDKRVAFKVKTTNPKKYRVRPNYGIIKPGESVTITITRQPFDEepgdaKKDKFVIQYAVAPGDEKDAKEA 99


                  ...
gi 17560040   290 FES 292
Cdd:pfam00635 100 FKR 102
 
Name Accession Description Interval E-value
Motile_Sperm pfam00635
MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These ...
 215-292 1.00e-12

MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins.


Pssm-ID: 459882  Cd Length: 109  Bit Score: 63.54  E-value: 1.00e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17560040   215 GVQTVSIANNTKSRKAFKVKTSDNLLYRVNPVFGFVEPGDKLSIDVLRHNGVE-----KTDHLIVLTSNASAEQNCARGV 289
Cdd:pfam00635  20 GTSTLTLKNTSDKRVAFKVKTTNPKKYRVRPNYGIIKPGESVTITITRQPFDEepgdaKKDKFVIQYAVAPGDEKDAKEA 99


                  ...
gi 17560040   290 FES 292
Cdd:pfam00635 100 FKR 102
 
Name Accession Description Interval E-value
Motile_Sperm pfam00635
MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These ...
 215-292 1.00e-12

MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins.


Pssm-ID: 459882  Cd Length: 109  Bit Score: 63.54  E-value: 1.00e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17560040   215 GVQTVSIANNTKSRKAFKVKTSDNLLYRVNPVFGFVEPGDKLSIDVLRHNGVE-----KTDHLIVLTSNASAEQNCARGV 289
Cdd:pfam00635  20 GTSTLTLKNTSDKRVAFKVKTTNPKKYRVRPNYGIIKPGESVTITITRQPFDEepgdaKKDKFVIQYAVAPGDEKDAKEA 99


                  ...
gi 17560040   290 FES 292
Cdd:pfam00635 100 FKR 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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