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Conserved domains on  [gi|71987683|ref|NP_506894|]
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Serpentine receptor class gamma [Caenorhabditis elegans]

Protein Classification

class U serpentine receptor( domain architecture ID 10563408)

class U serpentine receptor (Sru) belongs to a family of seven-transmembrane (7TM) G protein-coupled receptors involved in chemoreception, a central sense of soil nematodes like Caenorhabditis elegans

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
7TM_GPCR_Sru pfam10322
Serpentine type 7TM GPCR chemoreceptor Sru; Chemoreception is mediated in Caenorhabditis ...
 12-312 4.57e-90

Serpentine type 7TM GPCR chemoreceptor Sru; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Sru is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


:

Pssm-ID: 370976  Cd Length: 304  Bit Score: 271.70  E-value: 4.57e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71987683    12 IQGNPNYIQYEYKFNWVSIFSIFVLSYTISSFYIFLKLSFFSIKDREKIRNGGLRIEIFQSFFAMQFWNIQLIIGEYMTF 91
Cdd:pfam10322   1 IHGNPEYINFEFSFNFPTLLAIIPLIYIIPTIFIILKIFKFYLKAKWKKKKNGLNPHVFLSILLMQLSNLLFFIFDFLVF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71987683    92 RIPYTGLVTSFYASENPQFMLKLFMLIYNWAFYSSQLLTVLFYVLRAAVLYS--RNQKSMEKIILSVIYFIIFIGFVAAL 169
Cdd:pfam10322  81 RIPSTGIFTSWCASIEPNHLLKILFFFSYYFNYSSMLFPFLFCLLRLIILYSprNHKKINSKILRISIPLIFIYPFLFTF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71987683   170 PHVQAPAACLQALEPYPFGSILIISEWFLYNMKNvALGNMLFSASVTCTIIMLNALVVKKIRSRKFLST--QNVSTQNAK 247
Cdd:pfam10322 161 PMIPALGYCRQLGGPFPFGAIYIYFTGSWFGLRN-SIFHLFNSIFWLILIIILNILMFFKLRKLKKLSTssQRTSKKSRK 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71987683   248 VEKTLSRTMIILLIPMTFNLFVSIGELFQIGNFSYILFLRPLFLDARVHIVTCYFYFTHPVFKKK 312
Cdd:pfam10322 240 AERSLTLTMISMLIPYITNGILSITFLFDPSYSSYILLLRPIGNDLETCVVPWYFYLTHPIFKKK 304
 
Name Accession Description Interval E-value
7TM_GPCR_Sru pfam10322
Serpentine type 7TM GPCR chemoreceptor Sru; Chemoreception is mediated in Caenorhabditis ...
 12-312 4.57e-90

Serpentine type 7TM GPCR chemoreceptor Sru; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Sru is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


Pssm-ID: 370976  Cd Length: 304  Bit Score: 271.70  E-value: 4.57e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71987683    12 IQGNPNYIQYEYKFNWVSIFSIFVLSYTISSFYIFLKLSFFSIKDREKIRNGGLRIEIFQSFFAMQFWNIQLIIGEYMTF 91
Cdd:pfam10322   1 IHGNPEYINFEFSFNFPTLLAIIPLIYIIPTIFIILKIFKFYLKAKWKKKKNGLNPHVFLSILLMQLSNLLFFIFDFLVF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71987683    92 RIPYTGLVTSFYASENPQFMLKLFMLIYNWAFYSSQLLTVLFYVLRAAVLYS--RNQKSMEKIILSVIYFIIFIGFVAAL 169
Cdd:pfam10322  81 RIPSTGIFTSWCASIEPNHLLKILFFFSYYFNYSSMLFPFLFCLLRLIILYSprNHKKINSKILRISIPLIFIYPFLFTF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71987683   170 PHVQAPAACLQALEPYPFGSILIISEWFLYNMKNvALGNMLFSASVTCTIIMLNALVVKKIRSRKFLST--QNVSTQNAK 247
Cdd:pfam10322 161 PMIPALGYCRQLGGPFPFGAIYIYFTGSWFGLRN-SIFHLFNSIFWLILIIILNILMFFKLRKLKKLSTssQRTSKKSRK 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71987683   248 VEKTLSRTMIILLIPMTFNLFVSIGELFQIGNFSYILFLRPLFLDARVHIVTCYFYFTHPVFKKK 312
Cdd:pfam10322 240 AERSLTLTMISMLIPYITNGILSITFLFDPSYSSYILLLRPIGNDLETCVVPWYFYLTHPIFKKK 304
 
Name Accession Description Interval E-value
7TM_GPCR_Sru pfam10322
Serpentine type 7TM GPCR chemoreceptor Sru; Chemoreception is mediated in Caenorhabditis ...
 12-312 4.57e-90

Serpentine type 7TM GPCR chemoreceptor Sru; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Sru is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


Pssm-ID: 370976  Cd Length: 304  Bit Score: 271.70  E-value: 4.57e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71987683    12 IQGNPNYIQYEYKFNWVSIFSIFVLSYTISSFYIFLKLSFFSIKDREKIRNGGLRIEIFQSFFAMQFWNIQLIIGEYMTF 91
Cdd:pfam10322   1 IHGNPEYINFEFSFNFPTLLAIIPLIYIIPTIFIILKIFKFYLKAKWKKKKNGLNPHVFLSILLMQLSNLLFFIFDFLVF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71987683    92 RIPYTGLVTSFYASENPQFMLKLFMLIYNWAFYSSQLLTVLFYVLRAAVLYS--RNQKSMEKIILSVIYFIIFIGFVAAL 169
Cdd:pfam10322  81 RIPSTGIFTSWCASIEPNHLLKILFFFSYYFNYSSMLFPFLFCLLRLIILYSprNHKKINSKILRISIPLIFIYPFLFTF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71987683   170 PHVQAPAACLQALEPYPFGSILIISEWFLYNMKNvALGNMLFSASVTCTIIMLNALVVKKIRSRKFLST--QNVSTQNAK 247
Cdd:pfam10322 161 PMIPALGYCRQLGGPFPFGAIYIYFTGSWFGLRN-SIFHLFNSIFWLILIIILNILMFFKLRKLKKLSTssQRTSKKSRK 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71987683   248 VEKTLSRTMIILLIPMTFNLFVSIGELFQIGNFSYILFLRPLFLDARVHIVTCYFYFTHPVFKKK 312
Cdd:pfam10322 240 AERSLTLTMISMLIPYITNGILSITFLFDPSYSSYILLLRPIGNDLETCVVPWYFYLTHPIFKKK 304
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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