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Conserved domains on  [gi|17558718|ref|NP_506298|]
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Tetratricopeptide SHNi-TPR domain-containing protein [Caenorhabditis elegans]

Protein Classification

SHNi-TPR domain-containing protein( domain architecture ID 10565050)

SHNi-TPR domain-containing protein contains a reiterated sequence motif that is an interrupted form of the tetratricopeptide repeat; similar to Schizosaccharomyces pombe NASP-related protein sim3, a histone H3 and H3-like CENP-A-specific chaperone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SHNi-TPR pfam10516
SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted ...
 379-416 1.64e-08

SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted form of TPR repeat.


:

Pssm-ID: 402238 [Multi-domain]  Cd Length: 38  Bit Score: 50.52  E-value: 1.64e-08
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 17558718   379 ADVLTSLGEHGIADSKYEQAQKDLTEAISIQTVHLPAT 416
Cdd:pfam10516   1 ADVYDLLGEISLENENFPQAVTDLRKALELREELLPPE 38
 
Name Accession Description Interval E-value
SHNi-TPR pfam10516
SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted ...
 379-416 1.64e-08

SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted form of TPR repeat.


Pssm-ID: 402238 [Multi-domain]  Cd Length: 38  Bit Score: 50.52  E-value: 1.64e-08
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 17558718   379 ADVLTSLGEHGIADSKYEQAQKDLTEAISIQTVHLPAT 416
Cdd:pfam10516   1 ADVYDLLGEISLENENFPQAVTDLRKALELREELLPPE 38
 
Name Accession Description Interval E-value
SHNi-TPR pfam10516
SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted ...
 379-416 1.64e-08

SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted form of TPR repeat.


Pssm-ID: 402238 [Multi-domain]  Cd Length: 38  Bit Score: 50.52  E-value: 1.64e-08
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 17558718   379 ADVLTSLGEHGIADSKYEQAQKDLTEAISIQTVHLPAT 416
Cdd:pfam10516   1 ADVYDLLGEISLENENFPQAVTDLRKALELREELLPPE 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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