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Conserved domains on  [gi|17562866|ref|NP_505335|]
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Acyltransferase [Caenorhabditis elegans]

Protein Classification

acyltransferase family protein( domain architecture ID 15196437)

acyltransferase family protein, containing a SGNH/GDSL hydrolase domain, may catalyze the acylation of one of a variety of substrates such as peptidoglycans or sugars

EC:  2.3.1.-
Gene Ontology:  GO:0016747

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
OafA COG1835
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains ...
2-335 1.40e-44

Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 441440  Cd Length: 309  Bit Score: 161.35  E-value: 1.40e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866   2 RQDIQCLRGVAILLVLIYHLFPT--------LFVNGFLGVDIFFVISGFLMAQNLSKSKLVTVQDFFIFYYRRFRRILPL 73
Cdd:COG1835   8 LPSLDGLRGLAALLVVLYHAFLLfppgplggLLSGGFLGVDVFFVLSGFLITRSLLRRLERGGFSLRRFYLRRFLRIYPA 87
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866  74 YYLVIFVTLaavhlylgdfwwytnrryslaslflvtnqliihdsadyfrefladgtslnafiHLWSLGVEMQFYLLVPFI 153
Cdd:COG1835  88 YLVVLLLTG-----------------------------------------------------HLWSLSVELQFYLLFPLL 114
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866 154 FFGLQFLKNDLLRLIAS-SLTTVIGFLCFAFINQQFAFNFMFLRLWQFSAG-FMALFWKKIsfyeyseklkpakielilP 231
Cdd:COG1835 115 LLLLRRLRRRLLALLALlALASLLLLALLLTGDPSAAYFLTLTRLWEFLLGaLLALLYRRL------------------R 176
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866 232 IAKGDLTTVCLSTIALCILPNKIELLALRPLVTMATAFII----ASDSQDNQFLKSKTLCYIGDISYVIYLVHWPIIVLF 307
Cdd:COG1835 177 RLRRLLALAGLALLLAALLLLDGAPFPGFGLLPLLAALLVlaaaAGSGLLSRLLSSRPLVFLGDISYSLYLWHWPVLVLL 256
                       330       340       350
                ....*....|....*....|....*....|....*.
gi 17562866 308 LTASLRTH--------LFCILTILLASVVLHHIFEK 335
Cdd:COG1835 257 LALLGRLLgpapllllLLALALSLALAALSYRLVER 292
SGNH pfam19040
SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to ...
413-637 3.89e-26

SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to membrane domains from the AT3 families pfam01757.


:

Pssm-ID: 436916  Cd Length: 245  Bit Score: 107.38  E-value: 3.89e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866   413 GQKRVFGYCEYPKSHGNISVMMIGNSYVMTFSEPIRAQFHKNYSEYRYYSIGEGAAIYADSPGSH------QALDIFKRN 486
Cdd:pfam19040   8 LAGDPLGACRLGDGAGPPSVLLWGDSHAAALAPGLDEAAKERGVSVLQITRSGCPPLLLRLPDAAcaafnaAILEALALL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866   487 VAkfKPDVLFISARYS-----------ESVRLPIKHNDAYLKQMNENIEFYEKFVKKIYILDSHPLYNLNFLNFFMHYvv 555
Cdd:pfam19040  88 PS--KPDTVVLAARWSlylegpafndeGIGRDLSNTIAAFAAALRATVAALAAAGKKVVLLGPVPEYVPRNARCLARA-- 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866   556 QRPDELESLHLNRQKADEQMRYVKKRFSMV--KCKKCQFYDLSHVFVENDKYLTFDRGSMLsYVDNtIHLTKVGVELCEP 633
Cdd:pfam19040 164 GGLLRDPLCSIPRAEYRARNARVNAALDELaaKPGKVRVIDPSPLFCDDGGRCSALDGTPL-YFDD-NHLSPAGARLLAP 241

                  ....
gi 17562866   634 VFKK 637
Cdd:pfam19040 242 LFAP 245
 
Name Accession Description Interval E-value
OafA COG1835
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains ...
2-335 1.40e-44

Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441440  Cd Length: 309  Bit Score: 161.35  E-value: 1.40e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866   2 RQDIQCLRGVAILLVLIYHLFPT--------LFVNGFLGVDIFFVISGFLMAQNLSKSKLVTVQDFFIFYYRRFRRILPL 73
Cdd:COG1835   8 LPSLDGLRGLAALLVVLYHAFLLfppgplggLLSGGFLGVDVFFVLSGFLITRSLLRRLERGGFSLRRFYLRRFLRIYPA 87
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866  74 YYLVIFVTLaavhlylgdfwwytnrryslaslflvtnqliihdsadyfrefladgtslnafiHLWSLGVEMQFYLLVPFI 153
Cdd:COG1835  88 YLVVLLLTG-----------------------------------------------------HLWSLSVELQFYLLFPLL 114
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866 154 FFGLQFLKNDLLRLIAS-SLTTVIGFLCFAFINQQFAFNFMFLRLWQFSAG-FMALFWKKIsfyeyseklkpakielilP 231
Cdd:COG1835 115 LLLLRRLRRRLLALLALlALASLLLLALLLTGDPSAAYFLTLTRLWEFLLGaLLALLYRRL------------------R 176
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866 232 IAKGDLTTVCLSTIALCILPNKIELLALRPLVTMATAFII----ASDSQDNQFLKSKTLCYIGDISYVIYLVHWPIIVLF 307
Cdd:COG1835 177 RLRRLLALAGLALLLAALLLLDGAPFPGFGLLPLLAALLVlaaaAGSGLLSRLLSSRPLVFLGDISYSLYLWHWPVLVLL 256
                       330       340       350
                ....*....|....*....|....*....|....*.
gi 17562866 308 LTASLRTH--------LFCILTILLASVVLHHIFEK 335
Cdd:COG1835 257 LALLGRLLgpapllllLLALALSLALAALSYRLVER 292
SGNH pfam19040
SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to ...
413-637 3.89e-26

SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to membrane domains from the AT3 families pfam01757.


Pssm-ID: 436916  Cd Length: 245  Bit Score: 107.38  E-value: 3.89e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866   413 GQKRVFGYCEYPKSHGNISVMMIGNSYVMTFSEPIRAQFHKNYSEYRYYSIGEGAAIYADSPGSH------QALDIFKRN 486
Cdd:pfam19040   8 LAGDPLGACRLGDGAGPPSVLLWGDSHAAALAPGLDEAAKERGVSVLQITRSGCPPLLLRLPDAAcaafnaAILEALALL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866   487 VAkfKPDVLFISARYS-----------ESVRLPIKHNDAYLKQMNENIEFYEKFVKKIYILDSHPLYNLNFLNFFMHYvv 555
Cdd:pfam19040  88 PS--KPDTVVLAARWSlylegpafndeGIGRDLSNTIAAFAAALRATVAALAAAGKKVVLLGPVPEYVPRNARCLARA-- 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866   556 QRPDELESLHLNRQKADEQMRYVKKRFSMV--KCKKCQFYDLSHVFVENDKYLTFDRGSMLsYVDNtIHLTKVGVELCEP 633
Cdd:pfam19040 164 GGLLRDPLCSIPRAEYRARNARVNAALDELaaKPGKVRVIDPSPLFCDDGGRCSALDGTPL-YFDD-NHLSPAGARLLAP 241

                  ....
gi 17562866   634 VFKK 637
Cdd:pfam19040 242 LFAP 245
Acyl_transf_3 pfam01757
Acyltransferase family; This family includes a range of acyltransferase enzymes. This domain ...
4-329 2.12e-19

Acyltransferase family; This family includes a range of acyltransferase enzymes. This domain is found in a wide range of acyltransferase enzymes, including, mainly, bacterial proteins which catalyze the transfer of acyl groups, other than amino-acyl, from one compound to another, such as Glucans biosynthesis protein C (OPGC) or protein OatA from Listeria monocytogenes serovar 1/2a and Staphylococcus aureus, an integral membrane protein which is responsible for O-acetylation at the C6-hydroxyl group of N-acetylmuramyl residues, forming the corresponding N,6-O-diacetylmuramic acid of the peptidoglycan, a modification that determines lysozyme resistance. This domain is also present in eukaryotic proteins, namely O-acyltransferase like protein (OACYL) from mouse and RHY1 (Regulator of hypoxia-inducible factor 1) and NRF6 (Nose resistant to fluoxetine protein 6) from Caenorhabditis elegans.


Pssm-ID: 426413 [Multi-domain]  Cd Length: 330  Bit Score: 89.92  E-value: 2.12e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866     4 DIQCLRGVAILLVLIYHLFP----------------TLFVNGFLGVDIFFVISGFLMAQNLSKSKlvtvqDFFIFYYRRF 67
Cdd:pfam01757   3 YLDLLRGIAILLVVIGHVLLafgyggfglplelallFLVFLGRFGVPLFFFISGYLLAALRRRRR-----SLFKFIKKRL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866    68 RRILPLYYLVIFVTLAAVHLYLGDFWWYTNRRYSLASLFlvtnqliihdsadyfreflaDGTSLNAFIHLWSLGVEMQFY 147
Cdd:pfam01757  78 LRLLIPYLLWSLLYALLLLLVAGLSVGGALLLLLLLNNG--------------------PLFFLGVNGHLWFLSALFVFY 137
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866   148 LLVPFIFFGLQFLKNDLLRLIAsSLTTVIGFLCFAFINQQFAFNFMFLRLWQFSAGFMALFWKKISFYEYSEKLKPAKIE 227
Cdd:pfam01757 138 LLLPLLLRLLRKLKKSLLLLLL-LLLLLLFLLYILILLVGVPFTVLVLFIFLYLPFFLLGALLARYRKRIRSKRLKLLII 216
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866   228 LILPIAKGDLTTVCLSTIALCILPNKIELLALRPLVTMATAFIIASDSQDNQFLKSKTLC-YIGDISYVIYLVHWPIIVL 306
Cdd:pfam01757 217 ILLALALLALILLLLFLFGLDPLALEFYGYPSLLLLLLGILLLLLLALLLANLRSLRRLLsYLGKYSFGIYLIHPPILLL 296
                         330       340
                  ....*....|....*....|...
gi 17562866   307 FLTASLRTHLFCILTILLASVVL 329
Cdd:pfam01757 297 LGKLLGLLGLPLLPILLFLLLLV 319
 
Name Accession Description Interval E-value
OafA COG1835
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains ...
2-335 1.40e-44

Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441440  Cd Length: 309  Bit Score: 161.35  E-value: 1.40e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866   2 RQDIQCLRGVAILLVLIYHLFPT--------LFVNGFLGVDIFFVISGFLMAQNLSKSKLVTVQDFFIFYYRRFRRILPL 73
Cdd:COG1835   8 LPSLDGLRGLAALLVVLYHAFLLfppgplggLLSGGFLGVDVFFVLSGFLITRSLLRRLERGGFSLRRFYLRRFLRIYPA 87
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866  74 YYLVIFVTLaavhlylgdfwwytnrryslaslflvtnqliihdsadyfrefladgtslnafiHLWSLGVEMQFYLLVPFI 153
Cdd:COG1835  88 YLVVLLLTG-----------------------------------------------------HLWSLSVELQFYLLFPLL 114
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866 154 FFGLQFLKNDLLRLIAS-SLTTVIGFLCFAFINQQFAFNFMFLRLWQFSAG-FMALFWKKIsfyeyseklkpakielilP 231
Cdd:COG1835 115 LLLLRRLRRRLLALLALlALASLLLLALLLTGDPSAAYFLTLTRLWEFLLGaLLALLYRRL------------------R 176
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866 232 IAKGDLTTVCLSTIALCILPNKIELLALRPLVTMATAFII----ASDSQDNQFLKSKTLCYIGDISYVIYLVHWPIIVLF 307
Cdd:COG1835 177 RLRRLLALAGLALLLAALLLLDGAPFPGFGLLPLLAALLVlaaaAGSGLLSRLLSSRPLVFLGDISYSLYLWHWPVLVLL 256
                       330       340       350
                ....*....|....*....|....*....|....*.
gi 17562866 308 LTASLRTH--------LFCILTILLASVVLHHIFEK 335
Cdd:COG1835 257 LALLGRLLgpapllllLLALALSLALAALSYRLVER 292
SGNH pfam19040
SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to ...
413-637 3.89e-26

SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to membrane domains from the AT3 families pfam01757.


Pssm-ID: 436916  Cd Length: 245  Bit Score: 107.38  E-value: 3.89e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866   413 GQKRVFGYCEYPKSHGNISVMMIGNSYVMTFSEPIRAQFHKNYSEYRYYSIGEGAAIYADSPGSH------QALDIFKRN 486
Cdd:pfam19040   8 LAGDPLGACRLGDGAGPPSVLLWGDSHAAALAPGLDEAAKERGVSVLQITRSGCPPLLLRLPDAAcaafnaAILEALALL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866   487 VAkfKPDVLFISARYS-----------ESVRLPIKHNDAYLKQMNENIEFYEKFVKKIYILDSHPLYNLNFLNFFMHYvv 555
Cdd:pfam19040  88 PS--KPDTVVLAARWSlylegpafndeGIGRDLSNTIAAFAAALRATVAALAAAGKKVVLLGPVPEYVPRNARCLARA-- 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866   556 QRPDELESLHLNRQKADEQMRYVKKRFSMV--KCKKCQFYDLSHVFVENDKYLTFDRGSMLsYVDNtIHLTKVGVELCEP 633
Cdd:pfam19040 164 GGLLRDPLCSIPRAEYRARNARVNAALDELaaKPGKVRVIDPSPLFCDDGGRCSALDGTPL-YFDD-NHLSPAGARLLAP 241

                  ....
gi 17562866   634 VFKK 637
Cdd:pfam19040 242 LFAP 245
Acyl_transf_3 pfam01757
Acyltransferase family; This family includes a range of acyltransferase enzymes. This domain ...
4-329 2.12e-19

Acyltransferase family; This family includes a range of acyltransferase enzymes. This domain is found in a wide range of acyltransferase enzymes, including, mainly, bacterial proteins which catalyze the transfer of acyl groups, other than amino-acyl, from one compound to another, such as Glucans biosynthesis protein C (OPGC) or protein OatA from Listeria monocytogenes serovar 1/2a and Staphylococcus aureus, an integral membrane protein which is responsible for O-acetylation at the C6-hydroxyl group of N-acetylmuramyl residues, forming the corresponding N,6-O-diacetylmuramic acid of the peptidoglycan, a modification that determines lysozyme resistance. This domain is also present in eukaryotic proteins, namely O-acyltransferase like protein (OACYL) from mouse and RHY1 (Regulator of hypoxia-inducible factor 1) and NRF6 (Nose resistant to fluoxetine protein 6) from Caenorhabditis elegans.


Pssm-ID: 426413 [Multi-domain]  Cd Length: 330  Bit Score: 89.92  E-value: 2.12e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866     4 DIQCLRGVAILLVLIYHLFP----------------TLFVNGFLGVDIFFVISGFLMAQNLSKSKlvtvqDFFIFYYRRF 67
Cdd:pfam01757   3 YLDLLRGIAILLVVIGHVLLafgyggfglplelallFLVFLGRFGVPLFFFISGYLLAALRRRRR-----SLFKFIKKRL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866    68 RRILPLYYLVIFVTLAAVHLYLGDFWWYTNRRYSLASLFlvtnqliihdsadyfreflaDGTSLNAFIHLWSLGVEMQFY 147
Cdd:pfam01757  78 LRLLIPYLLWSLLYALLLLLVAGLSVGGALLLLLLLNNG--------------------PLFFLGVNGHLWFLSALFVFY 137
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866   148 LLVPFIFFGLQFLKNDLLRLIAsSLTTVIGFLCFAFINQQFAFNFMFLRLWQFSAGFMALFWKKISFYEYSEKLKPAKIE 227
Cdd:pfam01757 138 LLLPLLLRLLRKLKKSLLLLLL-LLLLLLFLLYILILLVGVPFTVLVLFIFLYLPFFLLGALLARYRKRIRSKRLKLLII 216
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866   228 LILPIAKGDLTTVCLSTIALCILPNKIELLALRPLVTMATAFIIASDSQDNQFLKSKTLC-YIGDISYVIYLVHWPIIVL 306
Cdd:pfam01757 217 ILLALALLALILLLLFLFGLDPLALEFYGYPSLLLLLLGILLLLLLALLLANLRSLRRLLsYLGKYSFGIYLIHPPILLL 296
                         330       340
                  ....*....|....*....|...
gi 17562866   307 FLTASLRTHLFCILTILLASVVL 329
Cdd:pfam01757 297 LGKLLGLLGLPLLPILLFLLLLV 319
WecH COG3274
Surface polysaccharide O-acyltransferase WecH [Cell wall/membrane/envelope biogenesis];
8-328 2.36e-09

Surface polysaccharide O-acyltransferase WecH [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442505 [Multi-domain]  Cd Length: 345  Bit Score: 59.62  E-value: 2.36e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866   8 LRGVAILLVLIYHL----------------FPTLFVNGFL--GVDIFFVISGFLMAQNLSksklvtvQDFFIFYYRRFRR 69
Cdd:COG3274  15 LRVLAIFAVVLIHVtapfvsspgligslnwWVANLLDSLSrfAVPLFFMISGALLLDRKK-------EDLKDFYKKRLRR 87
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866  70 ILPLYylvIFVTLaavhLYLGDFWWYtnRRYSLASLflvtnqliihdsADYFREFLADGTSlnafIHLWSLGVEMQFYLL 149
Cdd:COG3274  88 ILIPL---LFWSL----IYLLFFTFL--GGFSFNSL------------SEFLKNLLTGGVS----YHLWFLYMIIGLYLF 142
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866 150 VPFIFFGLQFLKNDLLRLIAssLTTVIGFLCFAFINQQFAFNFMFLRLWQFS-AGFMALFWkkiSFYEYSEKLKPAKIeL 228
Cdd:COG3274 143 TPLLRKLVRKASKRELLYFL--LLWLILSLLLPYLNTLLGIDLFFTLTLFLGyLGYFLLGY---YLARYKARLKKRRL-I 216
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17562866 229 ILPIAKGDLTTVCLSTIALCILPNKIELLA---LRPLVTMATA--FIIASDSQDNQFLKSKTLCYIGDISYVIYLVHWPI 303
Cdd:COG3274 217 ALLLFLVGLALTFLGTYLLSLQTGKFNELFysyLSPNVVLMSValFLLLKNLSFRSSKLSRLLSRLSKYSFGIYLIHPLV 296
                       330       340
                ....*....|....*....|....*.
gi 17562866 304 IVLFLTASLRTHLF-CILTILLASVV 328
Cdd:COG3274 297 LDLLTKLGLNLLNInPLLGIPLVALL 322
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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